BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0015.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774652.1| S-adenosylmethionine:tRNA-ribosyltransferase... 587 e-165 ref|YP_004751419.1| S-adenosylmethionine:tRNA ribosyltransferase... 560 e-158 ref|YP_001352040.1| S-adenosylmethionine:tRNA ribosyltransferase... 559 e-157 ref|YP_001098658.1| S-adenosylmethionine:tRNA ribosyltransferase... 553 e-155 ref|ZP_08274050.1| S-adenosylmethionine:tRNA ribosyltransferase-... 540 e-151 >ref|YP_003774652.1| S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)protein [Herbaspirillum seropedicae SmR1] gb|ADJ62744.1| S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/336 (83%), Positives = 310/336 (92%) Query: 1 MYSLSDFDFDLPPGLIAQLPLAERSASRLLQVDGATLTDRRFADVVDLLAPGDLLVFNNT 60 MYSLSDFDF+LPP LIAQ PLAERSASRLLQV GA LTDRRF+D+VDLL GDLLVFN+T Sbjct: 1 MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIVDLLQAGDLLVFNDT 60 Query: 61 RVLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFDVTVGERY 120 RV+KAR FG+KETGGK+E LVER+LD R+VHAQVRASKSPPPG+RIRLADAF+VTVGER+ Sbjct: 61 RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFEVTVGERF 120 Query: 121 GEFYTLQFPSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAGLHF 180 GEFYTL FP D FALLEQYGSLPLPPYI+H AD +DETRYQTVYAKEPGAVAAPTAGLHF Sbjct: 121 GEFYTLHFPEDAFALLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180 Query: 181 DEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRAVKA 240 D+ALL QL A+G+ AFVTLHVGAGTFQPVRVEDLS+HKMHSEWYTI ETV+ VRA KA Sbjct: 181 DQALLEQLAARGVQQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTIPPETVEAVRAAKA 240 Query: 241 AGGKIVAVGTTSMRALESASQAGALEAGSADTKLFITPGYTFKTVDRLITNFHLPKSTLL 300 AG +++AVGTTSMRALES SQ+GAL+AGS DT+LFITPGYTFKTVD+L+TNFHLPKSTLL Sbjct: 241 AGRRVIAVGTTSMRALESGSQSGALKAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300 Query: 301 MLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 336 MLVSAFAGY+ IRAAYAHAIAQ+YRFFSYGDAMLLT Sbjct: 301 MLVSAFAGYELIRAAYAHAIAQKYRFFSYGDAMLLT 336 >ref|YP_004751419.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Collimonas fungivorans Ter331] gb|AEK60596.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Collimonas fungivorans Ter331] Length = 342 Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust. Identities = 271/336 (80%), Positives = 302/336 (89%) Query: 1 MYSLSDFDFDLPPGLIAQLPLAERSASRLLQVDGATLTDRRFADVVDLLAPGDLLVFNNT 60 M+SLSD+DF+LPP LIAQ PL+ERSASRLL +DG L DR+F D+VD LA GDLLVFN+T Sbjct: 1 MHSLSDYDFELPPELIAQTPLSERSASRLLHLDGDRLIDRQFTDIVDQLAAGDLLVFNDT 60 Query: 61 RVLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFDVTVGERY 120 RVLKARFFG+KETGGKVEVLVERV+DNR+VHAQVRASKSPP G+RI LA+AFDV VGER Sbjct: 61 RVLKARFFGVKETGGKVEVLVERVVDNRTVHAQVRASKSPPAGARICLAEAFDVVVGERV 120 Query: 121 GEFYTLQFPSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAGLHF 180 GEFYTL FP+DVF L+E +G LPLPPYIEH AD FDETRYQTVYAK GAVAAPTAGLHF Sbjct: 121 GEFYTLVFPADVFELIEAHGRLPLPPYIEHDADAFDETRYQTVYAKHAGAVAAPTAGLHF 180 Query: 181 DEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRAVKA 240 D+ALL +LQ KGI A+VTLHVGAGTFQPVR E+L+EHKMHSEWYTI + TV+ VRA KA Sbjct: 181 DQALLERLQQKGIGFAYVTLHVGAGTFQPVRSENLAEHKMHSEWYTITEATVEAVRATKA 240 Query: 241 AGGKIVAVGTTSMRALESASQAGALEAGSADTKLFITPGYTFKTVDRLITNFHLPKSTLL 300 AGGK++AVGTTS+RALESASQ+G L+AGSADT LFITPGY FKTV+RLITNFHLPKSTLL Sbjct: 241 AGGKVIAVGTTSLRALESASQSGVLQAGSADTALFITPGYVFKTVERLITNFHLPKSTLL 300 Query: 301 MLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 336 MLVSAFAGYD IRAAYAHAIAQ+YRFFSYGDAMLL+ Sbjct: 301 MLVSAFAGYDCIRAAYAHAIAQRYRFFSYGDAMLLS 336 >ref|YP_001352040.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Janthinobacterium sp. Marseille] sp|A6SUU3.1|QUEA_JANMA RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; AltName: Full=Queuosine biosynthesis protein queA gb|ABR89182.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Janthinobacterium sp. Marseille] Length = 341 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 272/336 (80%), Positives = 299/336 (88%) Query: 1 MYSLSDFDFDLPPGLIAQLPLAERSASRLLQVDGATLTDRRFADVVDLLAPGDLLVFNNT 60 MYSLSDFDF+LP LIAQ PLAERSASRLLQV +TDR FA +VDLL+PGDLLVFN+T Sbjct: 1 MYSLSDFDFELPQELIAQTPLAERSASRLLQVLPEQMTDRNFAYIVDLLSPGDLLVFNDT 60 Query: 61 RVLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFDVTVGERY 120 RVLKARFFGIKETGGKVEVLVERV+D R+VHAQ+RASKSP G RIRLADAFDV VGER Sbjct: 61 RVLKARFFGIKETGGKVEVLVERVIDQRNVHAQIRASKSPAVGMRIRLADAFDVIVGERA 120 Query: 121 GEFYTLQFPSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAGLHF 180 GEFY LQFP DVF L+E +G LPLPPYIEHAAD +DETRYQTVYAK PGAVAAPTAGLHF Sbjct: 121 GEFYELQFPDDVFELIEAHGRLPLPPYIEHAADAYDETRYQTVYAKTPGAVAAPTAGLHF 180 Query: 181 DEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRAVKA 240 D+ALL L AKG+ A++TLHVGAGTFQPVR E+L+EH MHSEWYTI+Q+TVD V+A + Sbjct: 181 DQALLDALTAKGVKLAYITLHVGAGTFQPVRNENLAEHNMHSEWYTISQQTVDLVKATQV 240 Query: 241 AGGKIVAVGTTSMRALESASQAGALEAGSADTKLFITPGYTFKTVDRLITNFHLPKSTLL 300 AGG IVAVGTTSMRALESASQ+G+L+AGSADT+LFITPGYTFKTV RLITNFHLPKSTLL Sbjct: 241 AGGNIVAVGTTSMRALESASQSGSLQAGSADTRLFITPGYTFKTVTRLITNFHLPKSTLL 300 Query: 301 MLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 336 MLVSAFAGYD IRAAY HAI+Q+YRFFSYGDAM LT Sbjct: 301 MLVSAFAGYDTIRAAYQHAISQRYRFFSYGDAMFLT 336 >ref|YP_001098658.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Herminiimonas arsenicoxydans] sp|A4G1Z2.1|QUEA_HERAR RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; AltName: Full=Queuosine biosynthesis protein queA emb|CAL60529.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine biosynthesis protein QueA) [Herminiimonas arsenicoxydans] Length = 341 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 270/336 (80%), Positives = 297/336 (88%) Query: 1 MYSLSDFDFDLPPGLIAQLPLAERSASRLLQVDGATLTDRRFADVVDLLAPGDLLVFNNT 60 MYSLSDFDF+LP LIAQ PLAERSASRLL V + DR FAD+VDLL PGDLLVFN+T Sbjct: 1 MYSLSDFDFELPQELIAQTPLAERSASRLLHVAQDGMIDRAFADIVDLLNPGDLLVFNDT 60 Query: 61 RVLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFDVTVGERY 120 RVLKARFFG+KETGGKVEVLVERV+D+ VHAQ+RASKSP PG +IRLADAFDV VGER Sbjct: 61 RVLKARFFGVKETGGKVEVLVERVIDSAHVHAQIRASKSPVPGMKIRLADAFDVIVGERA 120 Query: 121 GEFYTLQFPSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAGLHF 180 GEFY LQFP D+FAL+E +G LPLPPYIEHAAD +DETRYQTVYAK PGAVAAPTAGLHF Sbjct: 121 GEFYELQFPGDIFALIEAHGRLPLPPYIEHAADAYDETRYQTVYAKTPGAVAAPTAGLHF 180 Query: 181 DEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRAVKA 240 D+ALL L+AKG+ A+VTLHVGAGTFQPVR E+L+EH MHSEWYTI+QETV V A +A Sbjct: 181 DQALLDTLKAKGVQFAYVTLHVGAGTFQPVRNENLAEHNMHSEWYTISQETVGAVHAAQA 240 Query: 241 AGGKIVAVGTTSMRALESASQAGALEAGSADTKLFITPGYTFKTVDRLITNFHLPKSTLL 300 AG IVAVGTTSMRALESASQ+G+L+AGSADT+LFITPGYTFKTV RLITNFHLPKSTLL Sbjct: 241 AGHNIVAVGTTSMRALESASQSGSLQAGSADTRLFITPGYTFKTVTRLITNFHLPKSTLL 300 Query: 301 MLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 336 MLVSAFAGYD IRAAY HAI+Q+YRFFSYGDAM LT Sbjct: 301 MLVSAFAGYDAIRAAYQHAISQRYRFFSYGDAMFLT 336 >ref|ZP_08274050.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32476.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Oxalobacteraceae bacterium IMCC9480] Length = 341 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 266/337 (78%), Positives = 291/337 (86%) Query: 1 MYSLSDFDFDLPPGLIAQLPLAERSASRLLQVDGATLTDRRFADVVDLLAPGDLLVFNNT 60 MYSLSDFDFDLP LIAQ PLAERSASRLLQ+DG T DR+FAD+V LL PGDLLVFN+T Sbjct: 1 MYSLSDFDFDLPQSLIAQHPLAERSASRLLQLDGDTPVDRQFADIVALLTPGDLLVFNDT 60 Query: 61 RVLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFDVTVGERY 120 RVLKARFFG K++GGKVEVL+ERVLD R+VHAQ+R+SKSP GS +RL+DAFDVTVG R Sbjct: 61 RVLKARFFGNKQSGGKVEVLIERVLDARTVHAQIRSSKSPVAGSIVRLSDAFDVTVGARA 120 Query: 121 GEFYTLQFPSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAGLHF 180 GEF+TL FPSDVF L+E YG LPLPPYI+H AD FDETRYQTVYA+ PGAVAAPTAGLHF Sbjct: 121 GEFFTLTFPSDVFELIETYGRLPLPPYIDHTADAFDETRYQTVYARTPGAVAAPTAGLHF 180 Query: 181 DEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRAVKA 240 D+ALL +L GI AFVTLHVGAGTFQPVR E L+EH MHSEWYT+ TVD VR +A Sbjct: 181 DQALLDKLTEHGIRFAFVTLHVGAGTFQPVRTEVLAEHAMHSEWYTLPAATVDAVRTTRA 240 Query: 241 AGGKIVAVGTTSMRALESASQAGALEAGSADTKLFITPGYTFKTVDRLITNFHLPKSTLL 300 AG +VAVGTTS+RALESASQ+G L AGSADT+LFITPGY FKTV RLITNFHLPKSTLL Sbjct: 241 AGRDVVAVGTTSLRALESASQSGELVAGSADTRLFITPGYRFKTVTRLITNFHLPKSTLL 300 Query: 301 MLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLTC 337 MLVSAFAGY IRAAYAHAIAQQYRFFSYGDAM LTC Sbjct: 301 MLVSAFAGYPAIRAAYAHAIAQQYRFFSYGDAMFLTC 337