BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0012.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002008713.1| cyochrome C2 precursor [Cupriavidus taiwanen...   119   1e-25
ref|YP_297682.1| cytochrome c, class I [Ralstonia eutropha JMP13...   119   2e-25
ref|YP_003777996.1| cytochrome c2 protein [Herbaspirillum serope...   115   2e-24
ref|YP_004682460.1| hypothetical protein CNE_2c22800 [Cupriavidu...   115   2e-24
ref|ZP_07777427.1| cytochrome c, class I [Pseudomonas fluorescen...   115   2e-24

>ref|YP_002008713.1| cyochrome C2 precursor [Cupriavidus taiwanensis LMG 19424]
 emb|CAQ72661.1| Cytochrome c2 precursor [Cupriavidus taiwanensis LMG 19424]
          Length = 124

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 66/78 (84%)

Query: 28  ARAGFGPQLNGIVGRPAAATKDYRYSPAMQNSHIVWTEDKLRAFMKSPGDVVPGTRMRFW 87
           ARAGFGPQLNGI GR A +TKD++YS AM+ S +VW+ D LRAF++SPG VVPGT+MRFW
Sbjct: 46  ARAGFGPQLNGIFGRTAGSTKDFQYSDAMRTSKVVWSHDTLRAFVRSPGKVVPGTKMRFW 105

Query: 88  GISNAQELNNLLAYMKSF 105
           G+ + Q++ +LLAY+++F
Sbjct: 106 GLGDDQQITDLLAYLETF 123


>ref|YP_297682.1| cytochrome c, class I [Ralstonia eutropha JMP134]
 gb|AAZ62838.1| Cytochrome c, class I [Ralstonia eutropha JMP134]
          Length = 154

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 64/79 (81%)

Query: 27  AARAGFGPQLNGIVGRPAAATKDYRYSPAMQNSHIVWTEDKLRAFMKSPGDVVPGTRMRF 86
           +AR  FGPQLN + GR A +T DYRYSPAM  S +VWT D LRAF+KSPG VVPGTRMRF
Sbjct: 75  SARGAFGPQLNAVFGRRAGSTSDYRYSPAMTASGVVWTADTLRAFIKSPGKVVPGTRMRF 134

Query: 87  WGISNAQELNNLLAYMKSF 105
           WGI N Q++++LLAY++++
Sbjct: 135 WGIGNDQQIDDLLAYLQTY 153


>ref|YP_003777996.1| cytochrome c2 protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ66088.1| cytochrome c2 protein [Herbaspirillum seropedicae SmR1]
          Length = 125

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 68/79 (86%)

Query: 27  AARAGFGPQLNGIVGRPAAATKDYRYSPAMQNSHIVWTEDKLRAFMKSPGDVVPGTRMRF 86
           +ARAGFGPQL+ ++GR A +T D++YSPAM N+  VWTEDKLRAF+K+P DVVPG +MRF
Sbjct: 45  SARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTEDKLRAFLKAPSDVVPGNKMRF 104

Query: 87  WGISNAQELNNLLAYMKSF 105
           WGI + ++++++LAY+++F
Sbjct: 105 WGIGSDKQIDDILAYLRTF 123


>ref|YP_004682460.1| hypothetical protein CNE_2c22800 [Cupriavidus necator N-1]
 gb|AEI81229.1| hypothetical protein CNE_2c22800 [Cupriavidus necator N-1]
          Length = 126

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 65/78 (83%)

Query: 28  ARAGFGPQLNGIVGRPAAATKDYRYSPAMQNSHIVWTEDKLRAFMKSPGDVVPGTRMRFW 87
           ARAGFGPQLNGI GR A  T D++YS AM+ S +VW+ D LRAF+ SPG VVPGT+MRFW
Sbjct: 48  ARAGFGPQLNGIFGRAAGGTSDFQYSEAMRASKVVWSHDTLRAFIHSPGKVVPGTKMRFW 107

Query: 88  GISNAQELNNLLAYMKSF 105
           G+S+ +++++LLAY+++F
Sbjct: 108 GLSDDKQISDLLAYLQTF 125


>ref|ZP_07777427.1| cytochrome c, class I [Pseudomonas fluorescens WH6]
 gb|EFQ61305.1| cytochrome c, class I [Pseudomonas fluorescens WH6]
          Length = 124

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 65/79 (82%)

Query: 27  AARAGFGPQLNGIVGRPAAATKDYRYSPAMQNSHIVWTEDKLRAFMKSPGDVVPGTRMRF 86
            AR GFGPQLNGI+GRPA  T DY+YS AM+NS +VWT DKL A++++P +VV GTRM F
Sbjct: 43  GARGGFGPQLNGIIGRPAGTTTDYQYSDAMKNSGVVWTRDKLAAYIEAPKNVVSGTRMIF 102

Query: 87  WGISNAQELNNLLAYMKSF 105
           WGIS+ +++ N+LAY+++F
Sbjct: 103 WGISDQEKIENILAYLETF 121