BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0009.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001630895.1| putative exported protein (TRAP-type transpo... 387 e-105 ref|YP_586977.1| TRAP-type C4-dicarboxylate transport system, pe... 231 1e-58 ref|YP_003981049.1| extracellular solute-binding protein, family... 224 2e-56 gb|EFV86174.1| C4-dicarboxylate-binding protein [Achromobacter x... 222 7e-56 gb|EGP47814.1| extracellular solute-binding protein, family 7 fa... 216 6e-54 >ref|YP_001630895.1| putative exported protein (TRAP-type transport system, periplasmic component) [Bordetella petrii DSM 12804] emb|CAP42627.1| putative exported protein (TRAP-type transport system, periplasmic component) [Bordetella petrii] Length = 330 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/299 (61%), Positives = 229/299 (76%) Query: 32 ASLRLINEYPATSVTASADLQFAAAVNKLSGGDVVVATLQEAANPYKGKDQVSAVRDGKA 91 A+L+LINEYPATS+TA+ADLQFA AV + S GD+ V TLQE NPYKG +QVSAV DGKA Sbjct: 27 ATLQLINEYPATSITAAADLQFAEAVKQASKGDIDVQTLQEKQNPYKGNEQVSAVLDGKA 86 Query: 92 EIGTLFAGILGGADSFFLLSSLPFVVDDFEQAQNLFTCTRPELERHLAALNMRLLYATPW 151 ++GTLF G+LG DS FLLSSLPF DF+QA L+ C RP LE+ L AL RLLY TPW Sbjct: 87 QMGTLFGGVLGNKDSLFLLSSLPFAAKDFKQAHALYACARPALEQRLQALGARLLYVTPW 146 Query: 152 PPSGIWSAKPVAWVGDVKALSIRTYDDNSRGVFQRVGAQSVNLPFSAVGAKLTSGELNAV 211 PPSGIWS +P+ DVKAL IRTYD S+ VF+RVGAQSV +P+SA+ AKL +GE+NAV Sbjct: 147 PPSGIWSVEPLRTEADVKALKIRTYDATSKSVFERVGAQSVQMPYSALAAKLAAGEVNAV 206 Query: 212 LSSGDGGAGNRLWDYLPNFTAISYAIPLSYTVINNEAWNKLTPAQQSTLTQAAKQTNEAS 271 L+SGDGGAG LWD+LPNFTA+SY+IPLSYT+INN+AWN L QQ+ LT+AA+ + AS Sbjct: 207 LTSGDGGAGRSLWDHLPNFTAVSYSIPLSYTIINNDAWNALDKTQQAILTKAAQDVSAAS 266 Query: 272 WATVKSRIQDNYTRMSEHGMRLNLQPAAAVRVALRQAGQEQADSWWQQDKNNEIRARCV 330 WA V+ RIQ NYTRM E+ M L+ P+ + AL++AG E+ +W + +K ++ A C+ Sbjct: 267 WAGVEQRIQANYTRMRENKMTLDTTPSEPIMAALKKAGAEETQTWLKANKLSDKDAACL 325 >ref|YP_586977.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Cupriavidus metallidurans CH34] gb|ABF11708.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component [Cupriavidus metallidurans CH34] Length = 351 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 176/305 (57%), Gaps = 3/305 (0%) Query: 15 AAIAATLLAAAP-AFAQTASL--RLINEYPATSVTASADLQFAAAVNKLSGGDVVVATLQ 71 +A+ A + AP A AQ A + ++ EYPATS+ FA V + G + Sbjct: 24 SALVALIAPFAPNAHAQPAPVVWQMATEYPATSMPGEGLTTFAQEVATRTQGTLAPQPTF 83 Query: 72 EAANPYKGKDQVSAVRDGKAEIGTLFAGILGGADSFFLLSSLPFVVDDFEQAQNLFTCTR 131 +A+ K +A+RDGK + G F G LG D FLLSSLPFV ++A L R Sbjct: 84 DASAGVKSAQMPAAIRDGKLQAGDAFGGALGEVDPIFLLSSLPFVATSVDKAHRLADLAR 143 Query: 132 PELERHLAALNMRLLYATPWPPSGIWSAKPVAWVGDVKALSIRTYDDNSRGVFQRVGAQS 191 + + LLY TPWPP+G+W+ KPV + D++ LS+R YD+ S V + GA++ Sbjct: 144 ADYAQAFEKQGQHLLYITPWPPTGLWTHKPVGTLDDLRTLSVRAYDETSADVMRAAGAKA 203 Query: 192 VNLPFSAVGAKLTSGELNAVLSSGDGGAGNRLWDYLPNFTAISYAIPLSYTVINNEAWNK 251 NL F+ +L G +NAVLSSGDGGAG +LWDYLP FTAI YA+PLS+T +N AW Sbjct: 204 QNLSFADAMPRLKDGSVNAVLSSGDGGAGRKLWDYLPYFTAIGYAMPLSFTTVNAAAWQS 263 Query: 252 LTPAQQSTLTQAAKQTNEASWATVKSRIQDNYTRMSEHGMRLNLQPAAAVRVALRQAGQE 311 LTPAQ+ +T AA+ T W+ + +R+ +N RM +G+ ++ PA AV+ AL+ AG Sbjct: 264 LTPAQRDAVTAAARATEGKQWSRLNTRLTENTARMRANGVTIDDNPAPAVQQALQAAGLS 323 Query: 312 QADSW 316 W Sbjct: 324 AVGVW 328 >ref|YP_003981049.1| extracellular solute-binding protein, family 7 family protein 5 [Achromobacter xylosoxidans A8] gb|ADP18334.1| bacterial extracellular solute-binding protein, family 7 family protein 5 [Achromobacter xylosoxidans A8] Length = 328 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 172/300 (57%), Gaps = 2/300 (0%) Query: 17 IAATLLAAAPAFAQTASLRLINEYPATSVTASADLQFAAAVNKLSGGDVVVATLQEAANP 76 IA LA A+A T +L + EYPATS+ FA V + G+VV+ +A+ Sbjct: 13 IAMAFLAHG-AYAAT-TLTMTTEYPATSMPGQGVSTFAELVRAKTAGNVVIDASFDASKG 70 Query: 77 YKGKDQVSAVRDGKAEIGTLFAGILGGADSFFLLSSLPFVVDDFEQAQNLFTCTRPELER 136 K D + AV+ K + G FAG L F +SSLPF+ D +A+NL RP E+ Sbjct: 71 IKSADMIDAVQARKVDAGDAFAGALATKYPLFGVSSLPFLADSLSKARNLNKAARPAYEK 130 Query: 137 HLAALNMRLLYATPWPPSGIWSAKPVAWVGDVKALSIRTYDDNSRGVFQRVGAQSVNLPF 196 LAA +LLY TPWP SGIWS + + V +K LSIRTYD S+ V Q+ GAQ+ N+ F Sbjct: 131 LLAAHGQKLLYTTPWPASGIWSKQKLDSVAALKKLSIRTYDATSQDVMQKAGAQARNVSF 190 Query: 197 SAVGAKLTSGELNAVLSSGDGGAGNRLWDYLPNFTAISYAIPLSYTVINNEAWNKLTPAQ 256 + + SGE+NAVLSSGDGGAG +LW++LPNF I+YA+P+S +N +A+ L Sbjct: 191 ADAMPLIASGEVNAVLSSGDGGAGRKLWEHLPNFAEINYAMPISVATMNLQAYQALDART 250 Query: 257 QSTLTQAAKQTNEASWATVKSRIQDNYTRMSEHGMRLNLQPAAAVRVALRQAGQEQADSW 316 + + QAA QT W + R+Q NY M ++G+ +N VR AL+ A + +W Sbjct: 251 RRAIDQAAAQTETEQWKRIDGRLQQNYANMRKNGVAINTSVPLPVRKALKDAAADSVTAW 310 >gb|EFV86174.1| C4-dicarboxylate-binding protein [Achromobacter xylosoxidans C54] Length = 328 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 117/284 (41%), Positives = 162/284 (57%) Query: 33 SLRLINEYPATSVTASADLQFAAAVNKLSGGDVVVATLQEAANPYKGKDQVSAVRDGKAE 92 +L + EYPATS+ FA V S G VV+ +AA K D + AV K + Sbjct: 27 TLTMTTEYPATSMPGQGVSTFADLVRSKSAGQVVIDASFDAAKGIKSGDMIDAVETRKVD 86 Query: 93 IGTLFAGILGGADSFFLLSSLPFVVDDFEQAQNLFTCTRPELERHLAALNMRLLYATPWP 152 G FAG L F +SSLPF+ D +A+ L RP E+ LAA +LLY TPWP Sbjct: 87 AGDAFAGALAAKYPLFGVSSLPFLADSLSKARALNKSARPAYEKLLAAHGQKLLYTTPWP 146 Query: 153 PSGIWSAKPVAWVGDVKALSIRTYDDNSRGVFQRVGAQSVNLPFSAVGAKLTSGELNAVL 212 SGIWS V V +KALSIRTYD S+ V Q+ GA++ N+ F+ ++ SGE+NAVL Sbjct: 147 ASGIWSKDKVDSVAALKALSIRTYDATSQDVMQKAGARAQNISFADAMPRIASGEVNAVL 206 Query: 213 SSGDGGAGNRLWDYLPNFTAISYAIPLSYTVINNEAWNKLTPAQQSTLTQAAKQTNEASW 272 SSGDGGAG +LW++LP F I+YA+P+S +N +A+ L + + QAA QT W Sbjct: 207 SSGDGGAGRKLWEHLPRFAEINYAMPISVATMNLKAYQALDAKSRKAIDQAAAQTEAEQW 266 Query: 273 ATVKSRIQDNYTRMSEHGMRLNLQPAAAVRVALRQAGQEQADSW 316 ++ R+Q NY M ++G+ ++ VR AL++A + W Sbjct: 267 KRIEGRLQQNYANMRKNGVTIDTAVPMPVRQALKKAAADSVKQW 310 >gb|EGP47814.1| extracellular solute-binding protein, family 7 family protein 5 [Achromobacter xylosoxidans AXX-A] Length = 328 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 115/278 (41%), Positives = 157/278 (56%) Query: 39 EYPATSVTASADLQFAAAVNKLSGGDVVVATLQEAANPYKGKDQVSAVRDGKAEIGTLFA 98 EYPATS+ FA V S G V + +AA K D + AV K + G FA Sbjct: 33 EYPATSMPGQGVSTFADLVRSKSAGQVQIDASFDAARGIKSGDMIDAVEARKVDAGDAFA 92 Query: 99 GILGGADSFFLLSSLPFVVDDFEQAQNLFTCTRPELERHLAALNMRLLYATPWPPSGIWS 158 G L F +SSLPF+ D +A+ L RP E+ LAA +LLY TPWP SGIWS Sbjct: 93 GALAAKYPLFGVSSLPFLADSLAKARALNKSARPAYEKLLAAHGQKLLYTTPWPASGIWS 152 Query: 159 AKPVAWVGDVKALSIRTYDDNSRGVFQRVGAQSVNLPFSAVGAKLTSGELNAVLSSGDGG 218 V V +KALSIRTYD S+ V Q+ GA++ N+ F+ ++ SGE+NAVLSSGDGG Sbjct: 153 KDKVDSVAALKALSIRTYDATSQDVMQKAGARAQNISFADAMPRIASGEVNAVLSSGDGG 212 Query: 219 AGNRLWDYLPNFTAISYAIPLSYTVINNEAWNKLTPAQQSTLTQAAKQTNEASWATVKSR 278 AG +LW++LP F I+YA+P+S +N +A+ L + + QAA QT W ++ R Sbjct: 213 AGRKLWEHLPRFAEINYAMPISVATMNLKAYQSLDAKSRKAIDQAAAQTEAEQWKRIEGR 272 Query: 279 IQDNYTRMSEHGMRLNLQPAAAVRVALRQAGQEQADSW 316 +Q NY M ++G+ ++ VR AL+ A + W Sbjct: 273 LQQNYANMRKNGVTIDTAVPMPVRQALKSAAADSVKQW 310