BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0008.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002944249.1| hypothetical protein Vapar_2356 [Variovorax ...   154   5e-36
ref|YP_004154849.1| hypothetical protein Varpa_2538 [Variovorax ...   145   2e-33
ref|ZP_08627655.1| hypothetical protein CSIRO_0717 [Bradyrhizobi...   126   1e-27
ref|NP_769035.1| hypothetical protein bll2395 [Bradyrhizobium ja...   105   2e-21
ref|YP_001412717.1| hypothetical protein Plav_1440 [Parvibaculum...   104   5e-21

>ref|YP_002944249.1| hypothetical protein Vapar_2356 [Variovorax paradoxus S110]
 gb|ACS18983.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 122

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 88/121 (72%)

Query: 1   MPTKETLEKFIARVEANAHIEAVEEFYTEDSTMQENTEPPRFGRDAHVANERKVMARVKS 60
           MP  E LE FIA VE+ AH +A+E++YTED+TM+EN   PR GR A VA E+  + R  S
Sbjct: 1   MPITERLEAFIAAVESGAHAQAIEDYYTEDATMRENQAEPRRGRSALVAREQATLDRTAS 60

Query: 61  LKSKCVRPVFVEGDKVVVRWIFRFEWLDGTVTNMEELAYQRWEGERIAEETFFYDPAQRL 120
           + S CVRPVFV GD VV+RW+F F + DG    MEELA+QRWEGERIA+E FFYDPAQ  
Sbjct: 61  VVSTCVRPVFVNGDHVVIRWVFDFRFKDGKAMRMEELAWQRWEGERIAQEEFFYDPAQAR 120

Query: 121 P 121
           P
Sbjct: 121 P 121


>ref|YP_004154849.1| hypothetical protein Varpa_2538 [Variovorax paradoxus EPS]
 gb|ADU36738.1| hypothetical protein Varpa_2538 [Variovorax paradoxus EPS]
          Length = 122

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 84/121 (69%)

Query: 1   MPTKETLEKFIARVEANAHIEAVEEFYTEDSTMQENTEPPRFGRDAHVANERKVMARVKS 60
           MPT   LE FIA VE  AH + +E++YTED+TM+EN   PR GR   VA E  V+ R +S
Sbjct: 1   MPTPARLEAFIAAVEGGAHAQVIEDYYTEDATMRENQAEPRRGRSTLVAQETAVLDRTES 60

Query: 61  LKSKCVRPVFVEGDKVVVRWIFRFEWLDGTVTNMEELAYQRWEGERIAEETFFYDPAQRL 120
           + S CVRPV V GD V + W+F F +  G+   MEE+A+QRW+GERIAEE FFYDPAQR 
Sbjct: 61  VVSTCVRPVLVNGDHVAIHWVFEFTFKGGSRMRMEEIAWQRWDGERIAEEQFFYDPAQRK 120

Query: 121 P 121
           P
Sbjct: 121 P 121


>ref|ZP_08627655.1| hypothetical protein CSIRO_0717 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP09559.1| hypothetical protein CSIRO_0717 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 118

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 84/118 (71%), Gaps = 1/118 (0%)

Query: 1   MPTKETLEKFIARVEANAHIEAVEEFYTEDSTMQENTEPPRFGRDAHVANERKVMARVKS 60
           MPT+  +++FIA VE+  H  A+E +YTED++MQENT PPR GRD  VA+ER ++AR+K 
Sbjct: 1   MPTRARVDEFIAVVESGDHAGAIERYYTEDASMQENTSPPRVGRDLLVAHERGILARMKE 60

Query: 61  LKSKCVRPVFVEGDKVVVRWIFRFEWLDGTVTNMEELAYQRWEGERIAEETFFYDPAQ 118
           ++SK +  V VEGD V++ W F    LDG   +++E+A Q+W G+RI  E FFY+ A+
Sbjct: 61  VRSKALVSV-VEGDNVMIHWNFDLTGLDGKTLHVDEIAMQQWRGDRIVRERFFYNAAK 117


>ref|NP_769035.1| hypothetical protein bll2395 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47660.1| bll2395 [Bradyrhizobium japonicum USDA 110]
          Length = 121

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 70/118 (59%)

Query: 1   MPTKETLEKFIARVEANAHIEAVEEFYTEDSTMQENTEPPRFGRDAHVANERKVMARVKS 60
           MP++E +E F  R+E    + A+E+FY  D+   EN   P  GR+A  A ER V+A  K 
Sbjct: 1   MPSREIVEAFAKRLEDGDFVGAIEQFYAPDAATYENNAAPTVGREALAAKERGVLAATKE 60

Query: 61  LKSKCVRPVFVEGDKVVVRWIFRFEWLDGTVTNMEELAYQRWEGERIAEETFFYDPAQ 118
           +K+  + P  +EGD V  RW F F   +G V  ++E+A+Q W G+ + EE F+YDP Q
Sbjct: 61  VKAARIGPSLIEGDTVATRWRFSFTSAEGVVRTLDEIAWQTWRGDELIEERFYYDPKQ 118


>ref|YP_001412717.1| hypothetical protein Plav_1440 [Parvibaculum lavamentivorans DS-1]
 gb|ABS63060.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 125

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)

Query: 1   MPTKETLEKFIARVEANAHIEAVEEFYTEDSTMQENTEPPRFGRDAHVANERKVMARVKS 60
           MP +E +  FIA V+A   +EA+E FYT D+TMQEN  PPR GRDA   +ERKV+     
Sbjct: 1   MPDRERVLDFIACVKAGKFVEAIERFYTGDATMQENAHPPRGGRDALAKSERKVL-ETSR 59

Query: 61  LKSKCVRPVFVEGDKVVVRWIFRFEWLDGTVTNMEELAYQRWEGERIAEETFFYDPAQ 118
           + ++      V+GD+ VV W+F     DG    M E+A Q W+G+ I  E F+YDPA 
Sbjct: 60  IVTREADWFLVDGDRSVVNWVFEITGPDGKTRVMNEMACQDWQGDLIHRERFYYDPAS 117