BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0006.p         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004134502.1| lysr substrate-binding protein [Mesorhizobiu...   108   3e-22
ref|YP_003448744.1| transcriptional regulator [Azospirillum sp. ...   106   2e-21
ref|ZP_02187864.1| transcriptional regulator, LysR family protei...   105   3e-21
ref|YP_001238336.1| LysR family transcriptional regulator [Brady...   103   8e-21
ref|YP_002912973.1| DNA-binding transcriptional activator GcvA [...   101   4e-20

>ref|YP_004134502.1| lysr substrate-binding protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gb|ADV15328.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
          Length = 301

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 67/86 (77%)

Query: 3  ARTLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLR 62
          AR LPSLNAL+AFEAAARH SFT AA EL VTQGAVSHQVKALE ELGV LF+R   +L 
Sbjct: 2  ARRLPSLNALKAFEAAARHGSFTRAADELSVTQGAVSHQVKALELELGVRLFDRERQKLS 61

Query: 63 LTAAGQRYLVVAGEAFDRIESGTRQL 88
          +T AG  YL V  +AFDRI  GT+++
Sbjct: 62 ITRAGLSYLEVVRDAFDRIALGTQRI 87


>ref|YP_003448744.1| transcriptional regulator [Azospirillum sp. B510]
 dbj|BAI72200.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 295

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 3  ARTLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLR 62
          +R LP LNALRAFEAAARH SFT AA ELHVTQ A+SHQ+KALEE LG+PLF R++  L 
Sbjct: 2  SRRLPPLNALRAFEAAARHLSFTKAADELHVTQAAISHQIKALEEWLGLPLFRRMNRALA 61

Query: 63 LTAAGQRYLVVAGEAFDRIESGTRQLL 89
          LT AGQ YL    EA D +   T +L+
Sbjct: 62 LTEAGQSYLPPVREAMDTLSQATDRLI 88


>ref|ZP_02187864.1| transcriptional regulator, LysR family protein [alpha
          proteobacterium BAL199]
 gb|EDP65518.1| transcriptional regulator, LysR family protein [alpha
          proteobacterium BAL199]
          Length = 312

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 66/90 (73%)

Query: 4  RTLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLRL 63
          R LP LN+LRAFEAAARH SFT AA ELHVTQ A+SHQ+K+LEE LG+ LF+R +  L L
Sbjct: 2  RRLPPLNSLRAFEAAARHLSFTKAAGELHVTQAAISHQIKSLEEWLGMVLFKRQNRALLL 61

Query: 64 TAAGQRYLVVAGEAFDRIESGTRQLLERPQ 93
          T AGQ YL    EAFDRI   T +L ER +
Sbjct: 62 TDAGQAYLPPLREAFDRIHDATAKLRERDK 91


>ref|YP_001238336.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ34430.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. BTAi1]
          Length = 207

 Score =  103 bits (258), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 94/187 (50%), Gaps = 35/187 (18%)

Query: 5   TLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLRLT 64
           TLP LNALRAFEAAARH SF  AAQELHVT  AV  QVKALE  LGV LFERL  QL LT
Sbjct: 4   TLPPLNALRAFEAAARHLSFKRAAQELHVTPAAVGQQVKALEARLGVRLFERLHKQLILT 63

Query: 65  AAGQRYLVVAGEAFDRIESGTRQLLERPQRARARARXALAGQGVALARSSLV-------- 116
           AAGQ YL    + F RI   T QL  +PQ A    +  + G G+ L R  L         
Sbjct: 64  AAGQSYLPGISDGFRRIADATAQL--KPQGA-VLLQLGVHG-GLDLRRLGLDAFRAGNAE 119

Query: 117 ----------VRELQQGRLVAPVSLSLPLAQAY-------------WLVHPQKGETAGNI 153
                     + EL +G++ A ++ SL     Y             WL+ P+       I
Sbjct: 120 IGLRVLQPAGLHELVEGKVDALIARSLGHHPGYRCDRIHGETGVGDWLIAPEGTADCPEI 179

Query: 154 AAFSNWL 160
            +  NWL
Sbjct: 180 VSLRNWL 186


>ref|YP_002912973.1| DNA-binding transcriptional activator GcvA [Burkholderia glumae
          BGR1]
 gb|ACR30269.1| Transcriptional regulator, LysR family [Burkholderia glumae BGR1]
          Length = 333

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 66/96 (68%), Gaps = 2/96 (2%)

Query: 1  MTARTLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQ 60
          M A  LP LNALRAFEAAARH+SF+ AA EL VT GAVSHQV+ALEEELGVPLF R   +
Sbjct: 1  MDALKLPPLNALRAFEAAARHESFSRAADELFVTHGAVSHQVRALEEELGVPLFTRNGRR 60

Query: 61 LRLTAAGQRYLVVAGEAFDRIESGTRQLL--ERPQR 94
          L LT AG+RY      A   +   TR++   +RP R
Sbjct: 61 LALTEAGERYARQVRAALTMLMDATREVCAPDRPNR 96