BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0003.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751858.1| SN-glycerol-3-phosphate transport system per... 488 e-136 ref|YP_003777179.1| sn-glycerol-3-phosphate ABC transporter perm... 484 e-135 ref|YP_001630927.1| sn-glycerol-3-phosphate transport system per... 407 e-111 ref|NP_880051.1| sn-glycerol-3-phosphate transport system permea... 406 e-111 gb|EGP43777.1| sn-glycerol-3-phosphate transport system permease... 405 e-111 >ref|YP_004751858.1| SN-glycerol-3-phosphate transport system permease [Collimonas fungivorans Ter331] gb|AEK61035.1| SN-glycerol-3-phosphate transport system permease protein [Collimonas fungivorans Ter331] Length = 283 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 244/283 (86%), Positives = 268/283 (94%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 MIERRPILD VSHLVLI+G II+ FPLYVAF+ASTQTA+++A +PLSLLPG+ LV NY Sbjct: 1 MIERRPILDMVSHLVLILGVIIIAFPLYVAFVASTQTAQEAAAAPLSLLPGSHLVENYGA 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 +LT+GASGNVS+PPV+RML +SL++AL IAIGKISISMLSAFAMVYFRF GR+LFFWMIF Sbjct: 61 LLTKGASGNVSAPPVARMLLVSLISALTIAIGKISISMLSAFAMVYFRFPGRSLFFWMIF 120 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRITPTYQVVSDF MLN+YAGLT+PLIASATATFLFRQFFLTVPDELAEAAR Sbjct: 121 MTLMLPVEVRITPTYQVVSDFHMLNSYAGLTIPLIASATATFLFRQFFLTVPDELAEAAR 180 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 IDGAGPLRF KDV+WPLSRTN+IALFVIMFIYGWNQYLWPLMIAT Q MYPIGIGIKTLI Sbjct: 181 IDGAGPLRFFKDVIWPLSRTNIIALFVIMFIYGWNQYLWPLMIATNQDMYPIGIGIKTLI 240 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 +GGDSAVEWNMVMAT++LAMLPPGLVVVVMQKWFVKGLVDSEK Sbjct: 241 AGGDSAVEWNMVMATLVLAMLPPGLVVVVMQKWFVKGLVDSEK 283 >ref|YP_003777179.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65271.1| ABC-type sn-glycerol-3-phosphate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 244/283 (86%), Positives = 266/283 (93%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 MIERRPILD +SH+VL++G +IV FPLYVAF+ASTQ+AEQSA+SPLSL PG E + NY T Sbjct: 1 MIERRPILDFLSHVVLVLGVLIVFFPLYVAFVASTQSAEQSALSPLSLAPGGEFMNNYST 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 VL +GA+G V++PPV MLW+SL TAL+IAIGKISISMLSAFA+VYFRF GR LFFWMIF Sbjct: 61 VLFKGAAGQVTAPPVLHMLWVSLATALIIAIGKISISMLSAFAIVYFRFPGRGLFFWMIF 120 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 VTLMLPVEVRITPTYQVVSD GMLN+YAGL+VPLIASATATFLFRQFFLTVPDELAEAAR Sbjct: 121 VTLMLPVEVRITPTYQVVSDLGMLNSYAGLSVPLIASATATFLFRQFFLTVPDELAEAAR 180 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPL+IAT+ +MYPIGIGIKTLI Sbjct: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLIIATDTSMYPIGIGIKTLI 240 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 SGGDSAVEWN+VMATMILAMLPPGLVVVVMQKWFVKGLVDSEK Sbjct: 241 SGGDSAVEWNLVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 >ref|YP_001630927.1| sn-glycerol-3-phosphate transport system permease protein [Bordetella petrii DSM 12804] emb|CAP42659.1| sn-Glycerol-3-phosphate transport system permease protein [Bordetella petrii] Length = 275 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/283 (69%), Positives = 234/283 (82%), Gaps = 8/283 (2%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 M+ERRP LD ++HL+L+ G +V FPLYV F+ASTQTA++ A +P+SLLPG V NY Sbjct: 1 MVERRPWLDILAHLILLCGVALVAFPLYVTFVASTQTAQEVAAAPMSLLPGPHFVDNYAR 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 L G RML++SL+ ALVI++GKI+IS+LSAFA+VYFRF GR FFWMIF Sbjct: 61 ALASAGVG--------RMLYVSLIMALVISLGKIAISLLSAFAVVYFRFPGRMFFFWMIF 112 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 VTLMLPVEVRI PTY+VV+D G+LN+YAGLT+PLIASATATFLFRQFFLTVPDEL EAAR Sbjct: 113 VTLMLPVEVRIAPTYKVVADLGLLNSYAGLTLPLIASATATFLFRQFFLTVPDELVEAAR 172 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 IDGAGPLRF +DVL PLSRT++ ALFVI FIYGWNQYLWPL+I T++ MYP+ IGIK +I Sbjct: 173 IDGAGPLRFFRDVLLPLSRTSIAALFVIQFIYGWNQYLWPLLITTQENMYPVVIGIKRMI 232 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 SGGDS EWN+ MAT +LAM+PP LVV++MQKWFVKGLVD+EK Sbjct: 233 SGGDSVTEWNITMATAMLAMVPPALVVILMQKWFVKGLVDTEK 275 >ref|NP_880051.1| sn-glycerol-3-phosphate transport system permease protein [Bordetella pertussis Tohama I] ref|NP_885137.1| sn-glycerol-3-phosphate transport system permease protein [Bordetella parapertussis 12822] ref|NP_889450.1| sn-glycerol-3-phosphate ABC transporter permease [Bordetella bronchiseptica RB50] emb|CAE41579.1| sn-glycerol-3-phosphate transport system permease protein [Bordetella pertussis Tohama I] emb|CAE38238.1| sn-glycerol-3-phosphate transport system permease protein [Bordetella parapertussis] emb|CAE33406.1| sn-glycerol-3-phosphate transport system permease protein [Bordetella bronchiseptica RB50] gb|AEE66670.1| sn-glycerol-3-phosphate transport system permease protein [Bordetella pertussis CS] Length = 283 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/283 (68%), Positives = 236/283 (83%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 M+ERRP LD ++H +L+ G +V FP+YV F+ASTQTA++ A +P+SL+PG V NY Sbjct: 1 MVERRPWLDILAHFILLCGVALVAFPIYVTFVASTQTAQEVASAPMSLIPGKHFVDNYMQ 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 L G+ G PV RM+++SL+ AL I++GKI+IS+LSAFA+VYFRF GR FFWMIF Sbjct: 61 ALFAGSGGGSYGAPVGRMMYVSLIMALAISLGKIAISLLSAFAVVYFRFPGRMFFFWMIF 120 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 VTLMLPVEVRI PTY+VV+D G+LN+YAGLT+PLIASATATFLFRQFFLTVPDEL EAAR Sbjct: 121 VTLMLPVEVRIAPTYKVVADLGLLNSYAGLTLPLIASATATFLFRQFFLTVPDELVEAAR 180 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 IDGAGP+RF +DVL PLSRT++ ALFVI FIYGWNQYLWPL+I T++ MYP+ IGIK +I Sbjct: 181 IDGAGPMRFFRDVLLPLSRTSIAALFVIQFIYGWNQYLWPLLITTQEDMYPVVIGIKRMI 240 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 SGGDS EWN+ MAT ILAM+PP LVV++MQKWFVKGLVD+EK Sbjct: 241 SGGDSVTEWNITMATAILAMIPPALVVILMQKWFVKGLVDTEK 283 >gb|EGP43777.1| sn-glycerol-3-phosphate transport system permease protein [Achromobacter xylosoxidans AXX-A] Length = 283 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/283 (69%), Positives = 240/283 (84%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 M+ERRP LD ++H++L+ G +V FPLYV F+ASTQTA++ A +P+SL+PG V NY Sbjct: 1 MVERRPWLDILAHVILLCGVAMVAFPLYVTFVASTQTAQEVASAPMSLIPGPHFVDNYMQ 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 L G+SG S PV RM+++SL+ ALVI+IGKI+IS+LSAFA+VYFRF GR FFWMIF Sbjct: 61 ALFGGSSGGSSGAPVGRMMYVSLIMALVISIGKIAISLLSAFAVVYFRFPGRMFFFWMIF 120 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 VTLMLPVEVRI PTY+VV+D G+LN+YAGLT+PLIASATATFLFRQFFLTVPDEL EAAR Sbjct: 121 VTLMLPVEVRIAPTYKVVADLGLLNSYAGLTLPLIASATATFLFRQFFLTVPDELIEAAR 180 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 IDGAGP+RF +DVL PLS+T++ ALFVI FIYGWNQYLWPL++ T++ MYP+ IGIK +I Sbjct: 181 IDGAGPVRFFRDVLLPLSKTSIAALFVIQFIYGWNQYLWPLLVTTQEDMYPVVIGIKRMI 240 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 SGGDS EWN+ MAT +LAM+PP LVV++MQKWFVKGLVD+EK Sbjct: 241 SGGDSVTEWNITMATAMLAMIPPALVVILMQKWFVKGLVDTEK 283