BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0002.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter perm... 470 e-130 ref|YP_004751859.1| SN-glycerol-3-phosphate transport system per... 447 e-124 ref|YP_786417.1| sn-glycerol-3-phosphate ABC transporter permeas... 372 e-101 ref|YP_547710.1| binding-protein-dependent transport systems inn... 370 e-100 ref|YP_003979353.1| sn-glycerol-3-phosphate transporter permease... 365 4e-99 >ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65272.1| ABC-type sn-glycerol-3-phosphate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 230/270 (85%), Positives = 251/270 (92%) Query: 1 VEKRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAA 60 +EKRARFTS WLPY LVAPQI+IT+LFFFWPAVQALYQS+LLQDAFGGYSEFVWFDNF Sbjct: 1 MEKRARFTSKWLPYLLVAPQIIITLLFFFWPAVQALYQSMLLQDAFGGYSEFVWFDNFKT 60 Query: 61 LFGDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVV 120 LFGDP+YL +F TTAIFS LVA G+ LSL+LAVFADRV +GA+IYKTFLIWPYAVSPVV Sbjct: 61 LFGDPTYLESFRTTAIFSALVAFFGLALSLLLAVFADRVRRGASIYKTFLIWPYAVSPVV 120 Query: 121 VGVLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGL 180 VGVLWMFLLSPSLG+LSHVL+WLG+ W+YM+NG AM LIVIAAIWKQISYNFLFFLAGL Sbjct: 121 VGVLWMFLLSPSLGILSHVLSWLGLPWDYMINGTHAMILIVIAAIWKQISYNFLFFLAGL 180 Query: 181 QSIPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGG 240 QSIPKSLIEAAAIDGAGPVKRFFTI+FP+ISPTTFFL VVN+VYAFFDTF IV+ATTHGG Sbjct: 181 QSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFVVNVVYAFFDTFVIVDATTHGG 240 Query: 241 PGKDTEILVYKVFSDGFKGGDLGSAAAXAV 270 PGKDTEILVYKVFSDGFKGGDLG +AA +V Sbjct: 241 PGKDTEILVYKVFSDGFKGGDLGGSAAQSV 270 >ref|YP_004751859.1| SN-glycerol-3-phosphate transport system permease [Collimonas fungivorans Ter331] gb|AEK61036.1| SN-glycerol-3-phosphate transport system permease protein [Collimonas fungivorans Ter331] Length = 315 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 218/270 (80%), Positives = 250/270 (92%) Query: 1 VEKRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAA 60 +EKRARF S+WLPYALVAPQI++T+LFF WPAVQALYQS+LLQDAFGGYSEFVWFDNF Sbjct: 22 LEKRARFKSAWLPYALVAPQIIVTLLFFVWPAVQALYQSMLLQDAFGGYSEFVWFDNFRT 81 Query: 61 LFGDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVV 120 LF D +YLA+F TTA+FS+LVAV G+ LSL+LA FADRVVKG+AIYKTFLIWPYAVSPVV Sbjct: 82 LFADSNYLASFKTTAVFSILVAVLGLSLSLMLAAFADRVVKGSAIYKTFLIWPYAVSPVV 141 Query: 121 VGVLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGL 180 VGVLWMF+LSP+LG++S+ L ++GI+WN+++NG AM LIVIAA+WKQ+SYNFLFFLAGL Sbjct: 142 VGVLWMFMLSPTLGIVSNWLHYIGIDWNHVLNGRHAMILIVIAAVWKQVSYNFLFFLAGL 201 Query: 181 QSIPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGG 240 Q+IPKSLIEAAAIDGAGPVKRF TIIFP++SPTTFFL+VVNIVYAFFDTFAI+EATT GG Sbjct: 202 QAIPKSLIEAAAIDGAGPVKRFATIIFPLLSPTTFFLLVVNIVYAFFDTFAIIEATTQGG 261 Query: 241 PGKDTEILVYKVFSDGFKGGDLGSAAAXAV 270 PGKDTEILVYKVF DGFKGGDLG AAA +V Sbjct: 262 PGKDTEILVYKVFIDGFKGGDLGGAAAQSV 291 >ref|YP_786417.1| sn-glycerol-3-phosphate ABC transporter permease [Bordetella avium 197N] emb|CAJ49509.1| sn-glycerol-3-phosphate ABC transporter,permease protein [Bordetella avium 197N] Length = 293 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/270 (67%), Positives = 226/270 (83%) Query: 1 VEKRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAA 60 +EKR F LPY L+APQ++IT++FFF PA QA++QS+ L+DAFG SEFV DNFA Sbjct: 1 MEKRVVFGHKTLPYLLLAPQLIITLIFFFLPAGQAMWQSLRLEDAFGLSSEFVGLDNFAE 60 Query: 61 LFGDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVV 120 LF PSYL +F TA+FS+LVA G+ +SL+LAV ADRV++GA +YKT LIWPYAV+P V Sbjct: 61 LFSQPSYLDSFKVTAVFSILVASVGLSVSLLLAVMADRVIRGAGLYKTLLIWPYAVAPAV 120 Query: 121 VGVLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGL 180 VGVLW+F+ SPS+G+L+ L LG+NWN +NGNQAM L++IAA+WKQISYNFLFFLAGL Sbjct: 121 VGVLWLFMFSPSVGVLAVALTNLGVNWNPRLNGNQAMLLVLIAAVWKQISYNFLFFLAGL 180 Query: 181 QSIPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGG 240 QSIP+SLIEAAAIDGA P +RF++I+FP++SPTTFFL+VVNI+YAFFDTFA+V+ TT GG Sbjct: 181 QSIPRSLIEAAAIDGASPARRFWSIVFPLLSPTTFFLLVVNIIYAFFDTFAVVDTTTQGG 240 Query: 241 PGKDTEILVYKVFSDGFKGGDLGSAAAXAV 270 PG T ILVYKV+SDGF+G DLGS+AA +V Sbjct: 241 PGTSTAILVYKVYSDGFRGLDLGSSAAQSV 270 >ref|YP_547710.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE42812.1| carbohydrate ABC transporter membrane protein 1, CUT1 family [Polaromonas sp. JS666] Length = 293 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/270 (67%), Positives = 225/270 (83%) Query: 1 VEKRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAA 60 +EKR F SSWLP+ L+APQ+++ +FFFWPA QAL QS +QDAFG +E+V NF Sbjct: 1 MEKRVLFRSSWLPWLLLAPQVIVISVFFFWPAAQALLQSFQVQDAFGSSTEWVGLANFEN 60 Query: 61 LFGDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVV 120 LF DP YLA+F TTA+FSVLVAV G+ LSL LA+FADR++KGA YKT L+ PYAV+P V Sbjct: 61 LFNDPGYLASFKTTAVFSVLVAVLGISLSLTLAIFADRIIKGALFYKTLLVVPYAVAPAV 120 Query: 121 VGVLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGL 180 GVLW+F+ SP+LG++++ L +GINWN++++ AMTLIV+AA+WKQISYNFLFFLAGL Sbjct: 121 AGVLWVFMFSPALGVVAYALDRVGINWNHLLDSGHAMTLIVMAAVWKQISYNFLFFLAGL 180 Query: 181 QSIPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGG 240 QSIPKSLIEAAAIDGA P +RF+TI FP++SPTTFFL+V+N+VYAFFDTFAIV+ATTHGG Sbjct: 181 QSIPKSLIEAAAIDGARPWRRFWTIQFPLLSPTTFFLLVINMVYAFFDTFAIVDATTHGG 240 Query: 241 PGKDTEILVYKVFSDGFKGGDLGSAAAXAV 270 PG+DT ILVYKV+ DGFK DLG +AA +V Sbjct: 241 PGQDTSILVYKVYYDGFKAMDLGGSAAQSV 270 >ref|YP_003979353.1| sn-glycerol-3-phosphate transporter permease protein UgpA [Achromobacter xylosoxidans A8] gb|ADP16638.1| sn-glycerol-3-phosphate transport system permease protein UgpA [Achromobacter xylosoxidans A8] Length = 293 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 178/270 (65%), Positives = 224/270 (82%) Query: 1 VEKRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAA 60 +EKR F LPY L+ PQI+IT++FFF PA QA++QS+ L+DAFG SEFV DNF Sbjct: 1 MEKRVVFGHKTLPYLLLLPQIIITVVFFFLPAGQAMWQSLRLEDAFGLSSEFVGLDNFME 60 Query: 61 LFGDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVV 120 LF +YL +F TA+FS+LVAV G+ +SL+LAV ADRV++GA +YKT LIWPYAV+P V Sbjct: 61 LFSQQAYLDSFRVTAVFSILVAVVGLSVSLLLAVMADRVIRGAGLYKTLLIWPYAVAPAV 120 Query: 121 VGVLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGL 180 VGVLW+FL SPS+G+L+ L G++WN +NGNQAMTL++IAA+WKQ+SYNFLFFLAGL Sbjct: 121 VGVLWLFLFSPSVGILAVALNHSGVDWNPRLNGNQAMTLVLIAAVWKQVSYNFLFFLAGL 180 Query: 181 QSIPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGG 240 QSIP+SLIEAAAIDGA P +RF++I+FP++SPTTFFL+VVNI+YAFFDTFA+V+ TT GG Sbjct: 181 QSIPRSLIEAAAIDGASPSRRFWSIVFPLLSPTTFFLLVVNIIYAFFDTFAVVDTTTQGG 240 Query: 241 PGKDTEILVYKVFSDGFKGGDLGSAAAXAV 270 PG T ILVYKV+SDGF+G DLGS+AA +V Sbjct: 241 PGTSTSILVYKVYSDGFRGLDLGSSAAQSV 270