BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0001.p (435 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777181.1| glycerol-3-phosphate ABC transporter peripla... 794 0.0 ref|YP_004751860.1| glycerol-3-phosphate ABC transporter peripla... 682 0.0 ref|YP_002981149.1| family 1 extracellular solute-binding protei... 647 0.0 ref|YP_001898672.1| family 1 extracellular solute-binding protei... 646 0.0 ref|YP_003745963.1| glycerol-3-phosphate-binding periplasmic pro... 645 0.0 >ref|YP_003777181.1| glycerol-3-phosphate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65273.1| ABC-type glycerol-3-phosphate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 437 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/431 (86%), Positives = 402/431 (93%) Query: 5 VKTFAAAALLATMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKGT 64 +KT A +LAT+T+SAFA T I WWHSMTGALGERVNA+AD+FNK+Q DYK+ PVYKGT Sbjct: 4 MKTLIATGVLATITSSAFAATAITWWHSMTGALGERVNALADDFNKTQGDYKIVPVYKGT 63 Query: 65 YDESMAAAIAAYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVPA 124 YDESM+AAIAAYRAGNAP ILQ+FEVGTATM+Y+KGA+KPVYEVM QAGEKFDQNAYVPA Sbjct: 64 YDESMSAAIAAYRAGNAPAILQVFEVGTATMIYAKGAVKPVYEVMHQAGEKFDQNAYVPA 123 Query: 125 VSGYYSTAKGMMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASGIT 184 V+GYYST KGMMSFPFNSSTTIMFYNKD+FAKAGLDP KPP TWQ+FVGMAAK+KASG Sbjct: 124 VAGYYSTPKGMMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKIKASGAA 183 Query: 185 CPYTTTWQSWVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQGY 244 C YTTTWQSWVHLESFS WHN E ATK+NGFGGLDARLK+N PL VRHIEN+SNWAKQGY Sbjct: 184 CAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSNWAKQGY 243 Query: 245 FIYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNTVI 304 F YAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVA LPYY+DVQGAPQNTVI Sbjct: 244 FTYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGAPQNTVI 303 Query: 305 GGASLWVMGGKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFYER 364 GGASLWVM GKKADEYKGVAKFF+YLSKPEV AKWHQ+TGYLPVTKAAYE+T+ SGFYER Sbjct: 304 GGASLWVMNGKKADEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGFYER 363 Query: 365 NPGTDVAVKQMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKRGD 424 NPGTDVAVKQMIVKTT+KSRG+RLGNYAQ+RTV DEELENVWTGKK+ K+ALDSAVKRGD Sbjct: 364 NPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKDALDSAVKRGD 423 Query: 425 ELLARFEKANK 435 ELLARFEKANK Sbjct: 424 ELLARFEKANK 434 >ref|YP_004751860.1| glycerol-3-phosphate ABC transporter periplasmic glycerol-3-phosphate-binding protein [Collimonas fungivorans Ter331] gb|AEK61037.1| Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein [Collimonas fungivorans Ter331] Length = 435 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/433 (76%), Positives = 373/433 (86%), Gaps = 2/433 (0%) Query: 5 VKTFAAAALLATMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKGT 64 +K A A LATM+ +A A T+I+WWHSM GALG+RVN +ADEFNKSQS+YKVTPVYKG Sbjct: 3 LKALAIACTLATMSIAAHAATEISWWHSMAGALGDRVNGLADEFNKSQSEYKVTPVYKGA 62 Query: 65 YDESMAAAIAAYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVPA 124 YDE+MAAA AAYRAGNAP+ILQ+FEVGTATM+YSKGAIKPV EVM+ AGE FD +AYVPA Sbjct: 63 YDEAMAAATAAYRAGNAPDILQVFEVGTATMMYSKGAIKPVSEVMKLAGEPFDPSAYVPA 122 Query: 125 VSGYYSTAKG--MMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASG 182 + GYY+ KG ++S PFNSSTT+MFYNKD+F KAGLDPNKPP TWQ+ AAK+KASG Sbjct: 123 IGGYYAAPKGGGLLSLPFNSSTTVMFYNKDMFTKAGLDPNKPPVTWQELAVDAAKLKASG 182 Query: 183 ITCPYTTTWQSWVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQ 242 C YTTTWQSWV LESFS WHN E A+K+NGF GLD RLK N PL V+HIEN++NWAKQ Sbjct: 183 AKCAYTTTWQSWVELESFSTWHNVEFASKNNGFDGLDTRLKFNSPLHVKHIENLANWAKQ 242 Query: 243 GYFIYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNT 302 GYF YAGRKDEA +KF AGEC I+TGSSS+YADI KN+KFKFG+A LPYY+DV GAPQNT Sbjct: 243 GYFTYAGRKDEATSKFYAGECGILTGSSSSYADIAKNSKFKFGIATLPYYNDVPGAPQNT 302 Query: 303 VIGGASLWVMGGKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFY 362 +IGGASLWVMGGKK ++YKGVAKFF +LSKPEVQAKWHQETGYLP T AAYEIT+KSGFY Sbjct: 303 MIGGASLWVMGGKKTEDYKGVAKFFKFLSKPEVQAKWHQETGYLPTTTAAYEITRKSGFY 362 Query: 363 ERNPGTDVAVKQMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKR 422 ERNPGTDV VKQMI KTTDKSRGIRLGN QIRT+IDEELENVWTGK PK+ALD+AV+R Sbjct: 363 ERNPGTDVPVKQMITKTTDKSRGIRLGNMPQIRTIIDEELENVWTGKITPKQALDTAVER 422 Query: 423 GDELLARFEKANK 435 G+ LL RFEK NK Sbjct: 423 GNLLLERFEKTNK 435 >ref|YP_002981149.1| family 1 extracellular solute-binding protein [Ralstonia pickettii 12D] ref|ZP_07677015.1| sn-glycerol-3-phosphate-binding periplasmic protein UgpB [Ralstonia sp. 5_7_47FAA] gb|ACS62477.1| extracellular solute-binding protein family 1 [Ralstonia pickettii 12D] gb|EFP64576.1| sn-glycerol-3-phosphate-binding periplasmic protein UgpB [Ralstonia sp. 5_7_47FAA] Length = 438 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/422 (72%), Positives = 355/422 (84%), Gaps = 1/422 (0%) Query: 15 ATMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKGTYDESMAAAIA 74 T A+AVT+I WWHSM GAL ++VN +A +FN SQSDYK+ PVYKG YDES+AA IA Sbjct: 16 CTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIA 75 Query: 75 AYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVPAVSGYYSTAKG 134 A+RAGNAP ILQ+FEVGTATM+ +KGAI PV ++M+ AGEKFD AYVPAV+GYY++ KG Sbjct: 76 AFRAGNAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKG 135 Query: 135 -MMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASGITCPYTTTWQS 193 M+SFPFNSSTTIM+YNKD F KAGLDPNKPPATWQ+ AAK+KA+G+ C YTT WQS Sbjct: 136 EMLSFPFNSSTTIMYYNKDAFKKAGLDPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQS 195 Query: 194 WVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQGYFIYAGRKDE 253 WVHLESFSAWHN AT++NGFGG ARL NGP+Q++HIEN+ + K+GYF YAGRKDE Sbjct: 196 WVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLDMQKKGYFTYAGRKDE 255 Query: 254 ANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNTVIGGASLWVMG 313 AKF AGECA+ TGSS+A A+IRKNAKF F APLPY + V GAPQNT+IGGASLWVMG Sbjct: 256 PKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMG 315 Query: 314 GKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFYERNPGTDVAVK 373 G KA+EYKGVAKFF++LS+PE+QA WHQ TGYLPVT AYE+T+KSGFYE+NPG DVAVK Sbjct: 316 GHKAEEYKGVAKFFSFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVK 375 Query: 374 QMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKRGDELLARFEKA 433 QMIVKTTDKSRGIRLGN+ QIR VIDEELE+VW GKKAPKEALD+AV RG+ELL RFEK Sbjct: 376 QMIVKTTDKSRGIRLGNFPQIRQVIDEELESVWAGKKAPKEALDTAVSRGNELLVRFEKT 435 Query: 434 NK 435 K Sbjct: 436 VK 437 >ref|YP_001898672.1| family 1 extracellular solute-binding protein [Ralstonia pickettii 12J] gb|ACD26240.1| extracellular solute-binding protein family 1 [Ralstonia pickettii 12J] Length = 438 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/422 (72%), Positives = 354/422 (83%), Gaps = 1/422 (0%) Query: 15 ATMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKGTYDESMAAAIA 74 T A+AVT+I WWHSM GAL ++VN +A +FN SQSDYK+ PVYKG YDES+AA IA Sbjct: 16 CTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIA 75 Query: 75 AYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVPAVSGYYSTAKG 134 A+RAGNAP ILQ+FEVGTATM+ +KGAI PV ++M+ AGEKFD AYVPAV+GYY++ KG Sbjct: 76 AFRAGNAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKG 135 Query: 135 -MMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASGITCPYTTTWQS 193 M+SFPFNSSTTIM+YNKD F KAGLDPNKPPATWQ+ AAK+KA+G+ C YTT WQS Sbjct: 136 EMLSFPFNSSTTIMYYNKDAFKKAGLDPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQS 195 Query: 194 WVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQGYFIYAGRKDE 253 WVHLESFSAWHN AT++NGFGG ARL NGP+Q++HIEN+ + K+GYF YAGRKDE Sbjct: 196 WVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLDMQKKGYFTYAGRKDE 255 Query: 254 ANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNTVIGGASLWVMG 313 AKF AGECA+ TGSS+A A+IRKNAKF F APLPY + V GAPQNT+IGGASLWVMG Sbjct: 256 PKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMG 315 Query: 314 GKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFYERNPGTDVAVK 373 G KA+EYKGVAKFFT+LS+PE+QA WHQ TGYLPVT AYE+T+KSGFYE+NPG DVAVK Sbjct: 316 GHKAEEYKGVAKFFTFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVK 375 Query: 374 QMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKRGDELLARFEKA 433 QMIVKTTDKSRGIRLGN+ QIR VIDEELE+VW GKK PKEALD+AV RG+ELL RFEK Sbjct: 376 QMIVKTTDKSRGIRLGNFPQIRQVIDEELESVWAGKKTPKEALDTAVSRGNELLVRFEKT 435 Query: 434 NK 435 K Sbjct: 436 VK 437 >ref|YP_003745963.1| glycerol-3-phosphate-binding periplasmic protein [Ralstonia solanacearum CFBP2957] emb|CBJ43356.1| Glycerol-3-phosphate-binding periplasmic protein [Ralstonia solanacearum CFBP2957] Length = 438 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/433 (71%), Positives = 362/433 (83%), Gaps = 3/433 (0%) Query: 6 KTFAAAALLA--TMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKG 63 K A A+LA T +A AVT+I WWHSM GAL E+VN +A++FN SQSDYKV PVYKG Sbjct: 5 KIAGAVAVLAACTFAQAAHAVTEIQWWHSMEGALNEKVNELANKFNASQSDYKVVPVYKG 64 Query: 64 TYDESMAAAIAAYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVP 123 YDES+AA IAA+RAGNAP ILQ+FEVGTATM+ ++GAI PV +VM+ AGEKFD AYVP Sbjct: 65 QYDESLAAGIAAFRAGNAPAILQVFEVGTATMMNARGAIVPVAKVMKDAGEKFDPKAYVP 124 Query: 124 AVSGYYSTAKG-MMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASG 182 AV+GYY++ KG M+SFPFNSSTTI++YNKD F KAGLDPNKPPATWQ+ AAK+KA+G Sbjct: 125 AVAGYYTSNKGEMLSFPFNSSTTILYYNKDAFKKAGLDPNKPPATWQEVAIDAAKLKAAG 184 Query: 183 ITCPYTTTWQSWVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQ 242 + C YTT WQSWVHLESFSAWHN AT++NGFGG ARL NGP+QV+HIE++ + K+ Sbjct: 185 VACGYTTDWQSWVHLESFSAWHNVLFATENNGFGGAKARLAFNGPVQVQHIEHLLDMEKK 244 Query: 243 GYFIYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNT 302 GYF YAGRKDE AKF AGECA+ TGSS+A A+IRKNAKF F APLPY + V GAPQNT Sbjct: 245 GYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNAKFSFSPAPLPYEAGVPGAPQNT 304 Query: 303 VIGGASLWVMGGKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFY 362 +IGGASLWVMGG K +EYKGVA+FFT+LS+PE+QA WHQ TGYLPVT AYE+T+KSGFY Sbjct: 305 IIGGASLWVMGGHKPEEYKGVARFFTFLSRPEIQADWHQSTGYLPVTMEAYELTRKSGFY 364 Query: 363 ERNPGTDVAVKQMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKR 422 ++NPG DVAVKQMIVKTTDKSRGIRLGN+ QIR+VIDEELE VW GKK+PKEALDSAV R Sbjct: 365 DKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVIDEELEAVWAGKKSPKEALDSAVAR 424 Query: 423 GDELLARFEKANK 435 G++LLARFEK K Sbjct: 425 GNDLLARFEKTVK 437