BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0752.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754775.1| LysR family transcriptional regulator [Colli... 300 1e-79 ref|XP_002539231.1| HTH-type transcriptional regulator ptxR, put... 251 6e-65 ref|YP_001747657.1| LysR family transcriptional regulator [Pseud... 226 4e-57 ref|YP_001777848.1| LysR family transcriptional regulator [Burkh... 223 2e-56 ref|YP_610222.1| LysR family transcriptional regulator [Pseudomo... 218 7e-55 >ref|YP_004754775.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63952.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 309 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 150/237 (63%), Positives = 178/237 (75%), Gaps = 11/237 (4%) Query: 1 MDQLAAMRIFRRVVESGGFSAAADALDISHTVVSRQVRQLEELLGAQLLNRTTRRFSLTE 60 MDQLAAMR FRRVVE+G F+AAA L+ SHT+VSRQVRQLE LGAQLLNRTTRRF+LTE Sbjct: 10 MDQLAAMRAFRRVVETGSFTAAAAELNQSHTIVSRQVRQLELELGAQLLNRTTRRFALTE 69 Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 GQ YY+R IIDQ++DAA+ VS H ARP+G VLRINAPM FGTLE+ Sbjct: 70 AGQEYYERSRLIIDQLDDAAQAVSAHQARPSG-----------VLRINAPMAFGTLELAQ 118 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLPQF+ A P+LKVD+VCNDR VD+I E FDV LR+TR+LPDSTLVAKRL + L A Sbjct: 119 WLPQFILANPQLKVDLVCNDRLVDIIEEGFDVALRLTRALPDSTLVAKRLASCGILLAAA 178 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLSGNVQANTGL 237 P YL++HG P++P DL QHN L Y+LA + E +F DG E VS+ GN+QANTG+ Sbjct: 179 PYYLKRHGVPQQPADLAQHNCLTYTLAQKPNEFLFQAADGSEHAVSVRGNLQANTGI 235 >ref|XP_002539231.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] gb|EEF23153.1| HTH-type transcriptional regulator ptxR, putative [Ricinus communis] Length = 241 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 122/187 (65%), Positives = 145/187 (77%), Gaps = 15/187 (8%) Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 VGQ YY+RC+ I+DQVEDA +V HH + P+G +LRINAPMVFGT+E+ Sbjct: 1 VGQAYYRRCVQILDQVEDATLMVQHHQSHPSG-----------LLRINAPMVFGTMELGK 49 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP FM+ YPELK+D+VCNDRFVDLI+EEFDVGLRITR+LPDSTL+AKRL+VS+M LVA Sbjct: 50 WLPDFMRRYPELKIDLVCNDRFVDLIAEEFDVGLRITRTLPDSTLMAKRLSVSDMVLVAA 109 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLS--GNVQANTGLI 238 P YL +HG P P DL QHN+LAYSLALQTTEL FT D R LVS+ GN+QANTG++ Sbjct: 110 PDYLRRHGIPSTPADLMQHNYLAYSLALQTTELTFT--DARGALVSVDVRGNLQANTGIV 167 Query: 239 VCAAARA 245 VC A RA Sbjct: 168 VCDAVRA 174 >ref|YP_001747657.1| LysR family transcriptional regulator [Pseudomonas putida W619] gb|ACA71288.1| transcriptional regulator, LysR family [Pseudomonas putida W619] Length = 301 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 155/243 (63%), Gaps = 11/243 (4%) Query: 1 MDQLAAMRIFRRVVESGGFSAAADALDISHTVVSRQVRQLEELLGAQLLNRTTRRFSLTE 60 MDQL+AM+ FRRVV+ G FSAAA +SHT +SRQV QLE LG QLL RTTRR LTE Sbjct: 1 MDQLSAMQTFRRVVDLGSFSAAASQAGLSHTALSRQVTQLERHLGTQLLARTTRRLHLTE 60 Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 G L+Y+ C+ I++Q++ +S H +P+G LR+ FG LE+ Sbjct: 61 AGALFYRHCVQILEQMQAMTLELSEHQKQPSG-----------TLRLGVATAFGELELGR 109 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP+F++ YP+L++++ C+DRF+DL+ EE D+ LR+T LPDS+LVA+RL SE+ LVA Sbjct: 110 WLPEFVERYPQLQIELHCSDRFIDLLEEEIDICLRVTDHLPDSSLVARRLATSEVLLVAA 169 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLSGNVQANTGLIVC 240 P YLE+HGTP P DL H L YS L L+ G ++ + + V AN+ + + Sbjct: 170 PRYLERHGTPASPDDLASHPLLGYSQLLHPQRLLLANEAGEQRQILMPRRVSANSPMALR 229 Query: 241 AAA 243 AAA Sbjct: 230 AAA 232 >ref|YP_001777848.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA93358.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 302 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/243 (47%), Positives = 155/243 (63%), Gaps = 11/243 (4%) Query: 1 MDQLAAMRIFRRVVESGGFSAAADALDISHTVVSRQVRQLEELLGAQLLNRTTRRFSLTE 60 MDQL AMR++R +VE+ GFSAAAD LD +H+ VSRQ++ LE LG QL+NR TR FSLT Sbjct: 1 MDQLLAMRVYRSLVEAKGFSAAADRLDTTHSTVSRQLKLLEASLGVQLVNRNTRHFSLTP 60 Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 G+ YY C++I+++V AA V+ +P+G VLR++ P+ GTLEMP Sbjct: 61 AGERYYDACVEILERVAAAAEDVTDTPGQPSG-----------VLRVSIPLSVGTLEMPA 109 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP F AYP++++DV C+DRFV+LI E FDV LRI+ LPDS LVAK L +S+ LVA Sbjct: 110 WLPAFRTAYPDIRLDVSCSDRFVNLIGEGFDVALRISSELPDSDLVAKTLAISDEILVAA 169 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLSGNVQANTGLIVC 240 P Y+ + G PR P +L++H+ LAYS P G V L G ++ + + Sbjct: 170 PDYVARRGLPRTPAELEKHDLLAYSGGDDRISWRVAPPSGAPVTVRLDGPLRIDAITALH 229 Query: 241 AAA 243 AAA Sbjct: 230 AAA 232 >ref|YP_610222.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] emb|CAK17439.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 301 Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 151/243 (62%), Gaps = 11/243 (4%) Query: 1 MDQLAAMRIFRRVVESGGFSAAADALDISHTVVSRQVRQLEELLGAQLLNRTTRRFSLTE 60 MDQL+AM+ FRRVV+ G FSAAA +SHTV+SRQV+ LE LG QLLNRTTRR LTE Sbjct: 1 MDQLSAMQTFRRVVDLGSFSAAATQAGLSHTVLSRQVKNLERELGTQLLNRTTRRLQLTE 60 Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 G L+Y+ C+ I++Q++ +S H +P G LR+ FG LE+ Sbjct: 61 AGALFYRHCVQILEQMQAMTLELSEHQQQPTG-----------TLRLGVATAFGELELGR 109 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP F++ + L++++ C+DRFVDL+ E+ DV LR+T LPDS+LVA++L SE+ LVA Sbjct: 110 WLPDFVERHERLQIELNCSDRFVDLLEEDIDVCLRVTDHLPDSSLVARKLATSEVLLVAA 169 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLSGNVQANTGLIVC 240 PAYLE+HG P P L H L YS L L GP G V + + AN+ + + Sbjct: 170 PAYLERHGCPSTPDALAAHPLLGYSQLLHPQRLQLHGPAGETTDVVMPRRLSANSPMALR 229 Query: 241 AAA 243 AAA Sbjct: 230 AAA 232