BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0743.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777719.1| hypothetical protein Hsero_4343 [Herbaspiril... 293 9e-78 ref|YP_523087.1| peptidase S16, lon-like protein [Rhodoferax fer... 236 1e-60 ref|YP_550422.1| peptidase S16, lon-like protein [Polaromonas sp... 235 4e-60 ref|YP_002943328.1| peptidase S16 lon domain-containing protein ... 230 1e-58 ref|YP_004619948.1| hypothetical protein Rta_28260 [Ramlibacter ... 226 1e-57 >ref|YP_003777719.1| hypothetical protein Hsero_4343 [Herbaspirillum seropedicae SmR1] gb|ADJ65811.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 293 bits (750), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 141/203 (69%), Positives = 163/203 (80%) Query: 2 ETIPLFPLGSALFPDGRLPLQIFEVRYLDMINKCIANGTSFGVVALTAGNEVRKPGLVES 61 +TIPLFPL S LFP+GRLPLQIFEVRYLDMI KCIA G+SFGVVALT G EVR+PG E Sbjct: 15 QTIPLFPLASTLFPEGRLPLQIFEVRYLDMIGKCIAEGSSFGVVALTQGAEVRRPGQSER 74 Query: 62 FVPVGTLAHIREWSAPVQGLLRISCSGTSRFRIAAKEQLKHGLWMAQVEPLENDQSVAIP 121 FV VGTLAHI+EWS P GL+RI+C G RFRI EQ KHGLW AQV+ +E D+ V+IP Sbjct: 75 FVGVGTLAHIQEWSTPSPGLMRIACLGGERFRIVQAEQQKHGLWTAQVDMMEGDRVVSIP 134 Query: 122 DELQNTVTALMNLLASLKNHSIPESDIPVAAPYRLDDCGWVSNRWSEMLPMSVEQKQGLL 181 +EL NT AL NLL S+ +P+S++P+AAPYRLDDCGWV+NRW+EM+P+SVE KQ LL Sbjct: 135 EELGNTAQALENLLQSVLRQGLPDSEVPIAAPYRLDDCGWVANRWAEMMPISVELKQSLL 194 Query: 182 ALDNPVLRLELVQDLLGERGLLH 204 ALDNPVLRLELVQD L E G L Sbjct: 195 ALDNPVLRLELVQDALDELGWLK 217 >ref|YP_523087.1| peptidase S16, lon-like protein [Rhodoferax ferrireducens T118] gb|ABD69556.1| peptidase S16, lon-like [Rhodoferax ferrireducens T118] Length = 230 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/209 (56%), Positives = 145/209 (69%), Gaps = 9/209 (4%) Query: 3 TIPLFPLGSALFPDGRLPLQIFEVRYLDMINKCIANGTSFGVVALTAGNEVRKP------ 56 ++PLFPL + L+P G LPL+IFEVRYLDMI KC G FGVVALT G EVRKP Sbjct: 20 SLPLFPLSTVLYPGGTLPLRIFEVRYLDMIGKCHKTGAPFGVVALTTGAEVRKPDNGSPT 79 Query: 57 --GLV-ESFVPVGTLAHIREWSAPVQGLLRISCSGTSRFRIAAKEQLKHGLWMAQVEPLE 113 G E F VGTLA I E+S P GL+ I C+G RFRI +E+LKHGLW+A V PL Sbjct: 80 GDGFAPEVFHAVGTLASITEFSHPQSGLMMIRCTGMQRFRITHQERLKHGLWVADVSPLA 139 Query: 114 NDQSVAIPDELQNTVTALMNLLASLKNHSIPESDIPVAAPYRLDDCGWVSNRWSEMLPMS 173 ND +V IPD+LQ TAL NL+ +L ++P + +PV PY+LDDC WV+NRW E+LPM Sbjct: 140 NDLTVKIPDDLQGVATALGNLINTLLARALPLAQMPVQPPYQLDDCAWVANRWCELLPMP 199 Query: 174 VEQKQGLLALDNPVLRLELVQDLLGERGL 202 +E KQ L+ LDNP++RLELV DLL G+ Sbjct: 200 LEHKQRLMELDNPLVRLELVSDLLERSGI 228 >ref|YP_550422.1| peptidase S16, lon-like protein [Polaromonas sp. JS666] gb|ABE45524.1| peptidase S16, lon-like protein [Polaromonas sp. JS666] Length = 229 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 113/211 (53%), Positives = 151/211 (71%), Gaps = 9/211 (4%) Query: 1 METIPLFPLGSALFPDGRLPLQIFEVRYLDMINKCIANGTSFGVVALTAGNEVRKPGLVE 60 + ++PLFPLG+ L+P G LPL+IFEVRYLDMI KC G FGVV+LT G+EVR+PG E Sbjct: 17 LTSLPLFPLGTVLYPGGLLPLRIFEVRYLDMIGKCHKAGAPFGVVSLTEGSEVRRPGHAE 76 Query: 61 ---------SFVPVGTLAHIREWSAPVQGLLRISCSGTSRFRIAAKEQLKHGLWMAQVEP 111 +F VGTLA I E++AP GL+ I C GT RF I++ E++KHGLW+A V Sbjct: 77 PSGDGFAHEAFSTVGTLATITEFAAPQAGLMVIRCIGTQRFTISSSEKMKHGLWIANVTR 136 Query: 112 LENDQSVAIPDELQNTVTALMNLLASLKNHSIPESDIPVAAPYRLDDCGWVSNRWSEMLP 171 ++D +V IP++LQ+T AL L+ +L++ +P +PV APYRL DCGWV+NRW E+LP Sbjct: 137 QDDDIAVKIPEDLQDTADALGKLIQTLQSRGVPAGQMPVLAPYRLQDCGWVANRWCELLP 196 Query: 172 MSVEQKQGLLALDNPVLRLELVQDLLGERGL 202 + +E KQ L+ LDNP+LRLELV D+LG G+ Sbjct: 197 IPLELKQRLMELDNPLLRLELVGDILGRTGI 227 >ref|YP_002943328.1| peptidase S16 lon domain-containing protein [Variovorax paradoxus S110] gb|ACS18062.1| peptidase S16 lon domain protein [Variovorax paradoxus S110] Length = 223 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 112/207 (54%), Positives = 147/207 (71%), Gaps = 5/207 (2%) Query: 1 METIPLFPLGSALFPDGRLPLQIFEVRYLDMINKCIANGTSFGVVALTAGNEVRKPGL-V 59 + ++PLFPLG+ LFPDG LPL+IFEVRYLDMI KC FGVV+LT+G+EVRK G Sbjct: 15 LHSLPLFPLGTVLFPDGVLPLRIFEVRYLDMIGKCRKADAPFGVVSLTSGSEVRKAGAEA 74 Query: 60 ESFVPVGTLAHIREWSAPVQGLLRISCSGTSRFRIAAKEQLKHGLWMAQVEPLENDQSVA 119 ESF VGTLA IRE+ +P GLL+I C GT RFR+ A E K+GLW+A+VE + D ++ Sbjct: 75 ESFAAVGTLAVIREFDSPQSGLLQIECVGTQRFRVRAAELQKYGLWVAEVEAVAEDTALE 134 Query: 120 IPDELQNTVTALMNLLASLKNHSIPES----DIPVAAPYRLDDCGWVSNRWSEMLPMSVE 175 IP +LQ+T TAL L+ +L+ + +PV PYR DDCGWV+NRW E++PM +E Sbjct: 135 IPGDLQHTATALRRLVNTLEERRRAQGAEALRLPVGEPYRFDDCGWVANRWCELVPMQLE 194 Query: 176 QKQGLLALDNPVLRLELVQDLLGERGL 202 +Q L+ LD+P++RLELV DLL G+ Sbjct: 195 LRQRLMELDSPLMRLELVSDLLARAGI 221 >ref|YP_004619948.1| hypothetical protein Rta_28260 [Ramlibacter tataouinensis TTB310] gb|AEG93929.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310] Length = 218 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 109/202 (53%), Positives = 141/202 (69%) Query: 1 METIPLFPLGSALFPDGRLPLQIFEVRYLDMINKCIANGTSFGVVALTAGNEVRKPGLVE 60 ++++PLFPLG+ LFP G LPL+IFEVRYLDMI +C G FGVV+LT G EVR+PG E Sbjct: 16 LQSLPLFPLGTVLFPGGLLPLRIFEVRYLDMIGRCHKAGAPFGVVSLTQGQEVRQPGSRE 75 Query: 61 SFVPVGTLAHIREWSAPVQGLLRISCSGTSRFRIAAKEQLKHGLWMAQVEPLENDQSVAI 120 +F VGTLA I P GL+ I SGT RFRI A +QLKHGLW+A VE L +D SV + Sbjct: 76 AFATVGTLATISALETPRPGLMMIRASGTRRFRITASDQLKHGLWVADVESLGDDLSVPV 135 Query: 121 PDELQNTVTALMNLLASLKNHSIPESDIPVAAPYRLDDCGWVSNRWSEMLPMSVEQKQGL 180 P +LQ T AL ++ SL+ + +P+ P+RL DCGWV+NRW E+LP+ V KQ + Sbjct: 136 PPDLQGTADALGKVIRSLQEKAESADQLPIQGPWRLQDCGWVANRWCELLPLPVALKQRM 195 Query: 181 LALDNPVLRLELVQDLLGERGL 202 + LDNP++RLELV D+L G+ Sbjct: 196 MELDNPLVRLELVSDVLARMGI 217