BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0742.p (516 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777718.1| sporulation protein [Herbaspirillum seropedi... 986 0.0 ref|YP_004754793.1| stage V sporulation protein R [Collimonas fu... 932 0.0 ref|YP_004228022.1| SpoVR family protein [Burkholderia sp. CCGE1... 882 0.0 ref|YP_003907105.1| SpoVR family protein [Burkholderia sp. CCGE1... 881 0.0 ref|ZP_02887818.1| SpoVR family protein [Burkholderia graminis C... 880 0.0 >ref|YP_003777718.1| sporulation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65810.1| sporulation protein [Herbaspirillum seropedicae SmR1] Length = 509 Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/504 (91%), Positives = 487/504 (96%) Query: 13 RRDPLPCPSDWSFELIERYNEEIAKVAASYKLDIYPIQLEIISAEQMMDAYASSGMPVNY 72 + DPLPCPSDWSFELIERYNEEIA+VA Y+LDIYPIQLEIISAEQMMDAYAS GMPVNY Sbjct: 6 KHDPLPCPSDWSFELIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHGMPVNY 65 Query: 73 RHWSFGKHFLATERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAAYGHNS 132 RHWS+GKHF+ TERDYKRGQMGLAYEIVINS+PCIAYLMEENTMTMQALV+AHAAYGHNS Sbjct: 66 RHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAAYGHNS 125 Query: 133 FFKGNYLFQLWTDASAIIDYLVYAKGYIAECEERYGFDRVEELLDSCHALMNYGVDRYKR 192 FFKGNYLFQLWTDASAIIDYLVYA+ YIAECEER+GF+RVEELLDSCHALMNYGVDRYKR Sbjct: 126 FFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGVDRYKR 185 Query: 193 PQRMSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEK 252 PQR+SLAQE+A+QREREAY QSQVNELWRTLPAKKE TAA V+ RFPSEPQENLLYFAEK Sbjct: 186 PQRLSLAQEKARQREREAYMQSQVNELWRTLPAKKEMTAAAVEGRFPSEPQENLLYFAEK 245 Query: 253 NAPLLESWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYDQGKLTDSFMM 312 NAPLLE WEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNT+YDQG+LTD FMM Sbjct: 246 NAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLTDGFMM 305 Query: 313 EFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTAEDKQWFPDMAGSNWL 372 EFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPT ED++WFPD+AG NWL Sbjct: 306 EFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTDEDREWFPDIAGRNWL 365 Query: 373 DTLHYVMRNFKDESFVAQYLSPKLMRDMRMFAVLDDESRSELEVSAIHNDSGYQYVRQAL 432 DTL YVMRN+KDESF+AQYLSPKLMRDMRMFAVLDDESRSE+EVSAIHN+ G+QYVRQAL Sbjct: 366 DTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDESRSEIEVSAIHNERGFQYVRQAL 425 Query: 433 SRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLE 492 SRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLE Sbjct: 426 SRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLE 485 Query: 493 SVDDNGYIVQRYECISDNRYVLRS 516 SVDDNGYIVQRYEC+++NRY LRS Sbjct: 486 SVDDNGYIVQRYECVAENRYALRS 509 >ref|YP_004754793.1| stage V sporulation protein R [Collimonas fungivorans Ter331] gb|AEK63970.1| Stage V sporulation protein R [Collimonas fungivorans Ter331] Length = 509 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/500 (86%), Positives = 471/500 (94%) Query: 16 PLPCPSDWSFELIERYNEEIAKVAASYKLDIYPIQLEIISAEQMMDAYASSGMPVNYRHW 75 PLPCPSDW+F+LIE YN+EIA+VAA+YKLDIYPIQLEII+AEQMMDAYAS+GMPVNYRHW Sbjct: 9 PLPCPSDWTFDLIELYNDEIARVAANYKLDIYPIQLEIITAEQMMDAYASAGMPVNYRHW 68 Query: 76 SFGKHFLATERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAAYGHNSFFK 135 SFGKHFL TERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAAYGHNSFFK Sbjct: 69 SFGKHFLMTERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAAYGHNSFFK 128 Query: 136 GNYLFQLWTDASAIIDYLVYAKGYIAECEERYGFDRVEELLDSCHALMNYGVDRYKRPQR 195 GNYLFQLWTDA AIIDYLVYAK YIAECEERYGF +VEELLDSCHALM+YGVDRYKRPQ+ Sbjct: 129 GNYLFQLWTDAHAIIDYLVYAKAYIAECEERYGFSKVEELLDSCHALMHYGVDRYKRPQK 188 Query: 196 MSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEKNAP 255 +SL +E+AQ+RER Y QSQVNELWRTLP KK TA QV+ RFP E QENLLYFAEKN+P Sbjct: 189 LSLEKEQAQRRERAEYMQSQVNELWRTLPEKKAETAEQVEGRFPPETQENLLYFAEKNSP 248 Query: 256 LLESWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYDQGKLTDSFMMEFL 315 LLESWEREVIRIVRKV QYFYPQRQTQVMNEGWATFWHYT+LNT+YD+GKLTD FMMEFL Sbjct: 249 LLESWEREVIRIVRKVAQYFYPQRQTQVMNEGWATFWHYTILNTLYDEGKLTDGFMMEFL 308 Query: 316 HSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTAEDKQWFPDMAGSNWLDTL 375 HSHSNVV+QPP+TK YY+G+NPYALGF MMSDIRRICE PT ED+QWFP++AG+ WL+TL Sbjct: 309 HSHSNVVYQPPVTKSYYSGMNPYALGFGMMSDIRRICEKPTDEDRQWFPELAGTPWLETL 368 Query: 376 HYVMRNFKDESFVAQYLSPKLMRDMRMFAVLDDESRSELEVSAIHNDSGYQYVRQALSRQ 435 HY MRNFKDESFVAQYLSPKL+RDMR+FAVLDDE+RSELEVSAIHND+GYQYVRQALSRQ Sbjct: 369 HYAMRNFKDESFVAQYLSPKLIRDMRLFAVLDDENRSELEVSAIHNDAGYQYVRQALSRQ 428 Query: 436 YDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLESVD 495 YDINHREPNIQVWSVNTRG+RSLTLRHFRSD R L D T+E+LRHMARLWQFDVYLESVD Sbjct: 429 YDINHREPNIQVWSVNTRGDRSLTLRHFRSDSRPLADGTDEILRHMARLWQFDVYLESVD 488 Query: 496 DNGYIVQRYECISDNRYVLR 515 D+G ++QRYEC+S+N+YVLR Sbjct: 489 DSGNVLQRYECVSENKYVLR 508 >ref|YP_004228022.1| SpoVR family protein [Burkholderia sp. CCGE1001] gb|ADX54962.1| SpoVR family protein [Burkholderia sp. CCGE1001] Length = 571 Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/500 (81%), Positives = 453/500 (90%), Gaps = 4/500 (0%) Query: 14 RDPLPCPSDWSFELIERYNEEIAKVAASYKLDIYPIQLEIISAEQMMDAYASSGMPVNYR 73 R PLPCPSDW+FELIE Y+ IA+VA Y+LD+YPIQLE+ISAEQMMDAYAS GMPVNYR Sbjct: 70 RRPLPCPSDWTFELIEEYDSHIARVAEQYELDVYPIQLELISAEQMMDAYASVGMPVNYR 129 Query: 74 HWSFGKHFLATERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAAYGHNSF 133 HWSFGKHFLATE+ Y+RGQMGLAYEIVINSNPCIAYLMEENTMTMQALV+AHAAYGHNSF Sbjct: 130 HWSFGKHFLATEKSYRRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVIAHAAYGHNSF 189 Query: 134 FKGNYLFQLWTDASAIIDYLVYAKGYIAECEERYGFDRVEELLDSCHALMNYGVDRYKRP 193 FKGNYLF+LWTDA AIIDYLVYAK YIAECEER+G DRVEELLDSCHALMNYGVDRYKRP Sbjct: 190 FKGNYLFRLWTDAHAIIDYLVYAKNYIAECEERFGLDRVEELLDSCHALMNYGVDRYKRP 249 Query: 194 QRMSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEKN 253 Q++SL +E A +REREAY QSQVNELWRTLP + +++ER+P EPQENLLYFAEKN Sbjct: 250 QKLSLEKEFAARREREAYLQSQVNELWRTLPTRHTPLPEEIEERYPPEPQENLLYFAEKN 309 Query: 254 APLLESWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYDQGKLTDSFMME 313 APLLE WEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMY+QGKL D FMME Sbjct: 310 APLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYNQGKLEDGFMME 369 Query: 314 FLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTAEDKQWFPDMAGSNWLD 373 FLHSHSNVV+QPP+TKPYY+GINPYALGFSMMSDIRRICENPT ED++WFP++AGS WL Sbjct: 370 FLHSHSNVVYQPPVTKPYYSGINPYALGFSMMSDIRRICENPTDEDRKWFPELAGSPWLP 429 Query: 374 TLHYVMRNFKDESFVAQYLSPKLMRDMRMFAVLDDESRSELEVSAIHNDSGYQYVRQALS 433 +HY MRNFKDESFVAQYLSP L+R+MR+F+VLDD+ R LEVSAIH+DSGYQYVRQALS Sbjct: 430 AMHYAMRNFKDESFVAQYLSPHLIREMRLFSVLDDDMRDALEVSAIHDDSGYQYVRQALS 489 Query: 434 RQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLES 493 RQYD++HREPNIQVW+VNTRG+RSLTLRHF SD R L ++EVL+HMARLWQFDVYLES Sbjct: 490 RQYDMHHREPNIQVWAVNTRGDRSLTLRHFMSDNRHLSSDSDEVLKHMARLWQFDVYLES 549 Query: 494 VDDNGYIVQRYECISDNRYV 513 VD+NG + +RYEC RYV Sbjct: 550 VDENGTVRKRYEC----RYV 565 >ref|YP_003907105.1| SpoVR family protein [Burkholderia sp. CCGE1003] gb|ADN57814.1| SpoVR family protein [Burkholderia sp. CCGE1003] Length = 571 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/500 (81%), Positives = 453/500 (90%), Gaps = 4/500 (0%) Query: 14 RDPLPCPSDWSFELIERYNEEIAKVAASYKLDIYPIQLEIISAEQMMDAYASSGMPVNYR 73 R PLPCPSDW+FELIE Y+ IA+VA Y+LD+YPIQLE+ISAEQMMDAYAS GMPVNYR Sbjct: 70 RRPLPCPSDWTFELIEEYDSHIARVAEQYELDVYPIQLELISAEQMMDAYASVGMPVNYR 129 Query: 74 HWSFGKHFLATERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAAYGHNSF 133 HWSFGKHFLATE+ Y+RGQMGLAYEIVINSNPCIAYLMEENTMTMQALV+AHAAYGHNSF Sbjct: 130 HWSFGKHFLATEKSYRRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVIAHAAYGHNSF 189 Query: 134 FKGNYLFQLWTDASAIIDYLVYAKGYIAECEERYGFDRVEELLDSCHALMNYGVDRYKRP 193 FKGNYLF+LWTDA AIIDYLVYAK YIAECEER+G DRVEELLDSCHALMNYGVDRYKRP Sbjct: 190 FKGNYLFRLWTDAHAIIDYLVYAKNYIAECEERFGLDRVEELLDSCHALMNYGVDRYKRP 249 Query: 194 QRMSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEKN 253 Q++SL +E A +REREAY QSQVNELWRTLP + +++ER+P EPQENLLYFAEKN Sbjct: 250 QKLSLEKEFAARREREAYLQSQVNELWRTLPTRHTPLPEEIEERYPPEPQENLLYFAEKN 309 Query: 254 APLLESWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYDQGKLTDSFMME 313 APLLE WEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMY+QGKL D FMME Sbjct: 310 APLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYNQGKLEDGFMME 369 Query: 314 FLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTAEDKQWFPDMAGSNWLD 373 FLHSHSNVV+QPP+TKPYY+GINPYALGFSMMSDIRRICENPT ED++WFP++AGS WL Sbjct: 370 FLHSHSNVVYQPPVTKPYYSGINPYALGFSMMSDIRRICENPTDEDRKWFPELAGSPWLP 429 Query: 374 TLHYVMRNFKDESFVAQYLSPKLMRDMRMFAVLDDESRSELEVSAIHNDSGYQYVRQALS 433 +HY MRNFKDESFVAQYLSP L+R+MR+F+VLDD+ R LEVSAIH+DSGYQYVRQALS Sbjct: 430 AMHYAMRNFKDESFVAQYLSPHLIREMRLFSVLDDDMRDALEVSAIHDDSGYQYVRQALS 489 Query: 434 RQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLES 493 RQYD++HREPNIQVWSVNTRG+RSLTLRHF SD R L ++EVL+HMARLWQFDVYLES Sbjct: 490 RQYDMHHREPNIQVWSVNTRGDRSLTLRHFMSDNRHLSSDSDEVLKHMARLWQFDVYLES 549 Query: 494 VDDNGYIVQRYECISDNRYV 513 VD+NG + +RYEC RYV Sbjct: 550 VDENGTVRKRYEC----RYV 565 >ref|ZP_02887818.1| SpoVR family protein [Burkholderia graminis C4D1M] gb|EDT06617.1| SpoVR family protein [Burkholderia graminis C4D1M] Length = 571 Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/500 (81%), Positives = 453/500 (90%), Gaps = 4/500 (0%) Query: 14 RDPLPCPSDWSFELIERYNEEIAKVAASYKLDIYPIQLEIISAEQMMDAYASSGMPVNYR 73 R PLPCPSDW+FELIE Y+ IA+VA Y+LD+YPIQLE+ISAEQMMDAYAS GMPVNYR Sbjct: 70 RRPLPCPSDWTFELIEEYDSHIARVAEQYELDVYPIQLELISAEQMMDAYASVGMPVNYR 129 Query: 74 HWSFGKHFLATERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAAYGHNSF 133 HWSFGKHFL+TE+ Y+RGQMGLAYEIVINSNPCIAYLMEENTMTMQALV+AHAAYGHNSF Sbjct: 130 HWSFGKHFLSTEKSYRRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVIAHAAYGHNSF 189 Query: 134 FKGNYLFQLWTDASAIIDYLVYAKGYIAECEERYGFDRVEELLDSCHALMNYGVDRYKRP 193 FKGNYLF+LWTDA AIIDYLVYAK YIAECEER+G DRVEELLDSCHALMNYGVDRYKRP Sbjct: 190 FKGNYLFRLWTDAHAIIDYLVYAKNYIAECEERFGLDRVEELLDSCHALMNYGVDRYKRP 249 Query: 194 QRMSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEKN 253 Q++SL +E A +REREAY QSQVNELWRTLP + +++ER+P EPQENLLYFAEKN Sbjct: 250 QKLSLEKEFAARREREAYLQSQVNELWRTLPTRHTPLPEEIEERYPPEPQENLLYFAEKN 309 Query: 254 APLLESWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYDQGKLTDSFMME 313 APLLE WEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMY+QGKL D FMME Sbjct: 310 APLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYNQGKLEDGFMME 369 Query: 314 FLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTAEDKQWFPDMAGSNWLD 373 FLHSHSNVV+QPP+TKPYY+GINPYALGFSMMSDIRRICENPT ED++WFP++AGS WL Sbjct: 370 FLHSHSNVVYQPPVTKPYYSGINPYALGFSMMSDIRRICENPTEEDRKWFPELAGSPWLP 429 Query: 374 TLHYVMRNFKDESFVAQYLSPKLMRDMRMFAVLDDESRSELEVSAIHNDSGYQYVRQALS 433 +HY MRNFKDESFVAQYLSP L+R+MR+F+VLDD+ R LEVSAIH+DSGYQYVRQALS Sbjct: 430 AMHYAMRNFKDESFVAQYLSPHLIREMRLFSVLDDDMRDALEVSAIHDDSGYQYVRQALS 489 Query: 434 RQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLES 493 RQYD++HREPNIQVWSVNTRG+RSLTLRHF SD R L ++EVL+HMARLWQFDVYLES Sbjct: 490 RQYDMHHREPNIQVWSVNTRGDRSLTLRHFMSDNRHLSSDSDEVLKHMARLWQFDVYLES 549 Query: 494 VDDNGYIVQRYECISDNRYV 513 VD+NG + +RYEC RYV Sbjct: 550 VDENGTVRKRYEC----RYV 565