BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0737.p         (44 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777715.1| 50S ribosomal protein L34 [Herbaspirillum se...    84   6e-15
ref|YP_004755094.1| 50S ribosomal protein L34p [Collimonas fungi...    84   7e-15
ref|ZP_08273136.1| LSU ribosomal protein L34p [Oxalobacteraceae ...    82   2e-14
ref|ZP_04579793.1| 50S ribosomal subunit protein L34 [Oxalobacte...    82   3e-14
ref|YP_001101694.1| 50S ribosomal protein L34 [Herminiimonas ars...    82   3e-14

>ref|YP_003777715.1| 50S ribosomal protein L34 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65807.1| 50S ribosomal subunit L34 protein [Herbaspirillum seropedicae
          SmR1]
          Length = 45

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLAA 44
          MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLAA
Sbjct: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLAA 44


>ref|YP_004755094.1| 50S ribosomal protein L34p [Collimonas fungivorans Ter331]
 gb|AEK64271.1| LSU ribosomal protein L34p [Collimonas fungivorans Ter331]
          Length = 51

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/44 (97%), Positives = 44/44 (100%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLAA 44
          MKRTYQPSVVRRKRTHGFRARMATRGGRAV+NARRAKGRKRLAA
Sbjct: 8  MKRTYQPSVVRRKRTHGFRARMATRGGRAVLNARRAKGRKRLAA 51


>ref|ZP_08273136.1| LSU ribosomal protein L34p [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33393.1| LSU ribosomal protein L34p [Oxalobacteraceae bacterium IMCC9480]
          Length = 44

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/44 (95%), Positives = 44/44 (100%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLAA 44
          MKRTYQPSVVRRKRTHGFRARMATRGGRAV+NARR+KGRKRLAA
Sbjct: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVLNARRSKGRKRLAA 44


>ref|ZP_04579793.1| 50S ribosomal subunit protein L34 [Oxalobacter formigenes OXCC13]
 gb|EEO30766.1| 50S ribosomal subunit protein L34 [Oxalobacter formigenes OXCC13]
          Length = 51

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/44 (93%), Positives = 43/44 (97%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLAA 44
          MKRTYQPSVVRRKRTHGFRARMAT+GGRAV+NARRAKGRKRLA 
Sbjct: 8  MKRTYQPSVVRRKRTHGFRARMATKGGRAVLNARRAKGRKRLAV 51


>ref|YP_001101694.1| 50S ribosomal protein L34 [Herminiimonas arsenicoxydans]
 ref|YP_001355387.1| 50S ribosomal protein L34 [Janthinobacterium sp. Marseille]
 sp|A4GAN6.1|RL34_HERAR RecName: Full=50S ribosomal protein L34
 sp|A6T4E0.1|RL34_JANMA RecName: Full=50S ribosomal protein L34
 emb|CAL63573.1| 50S ribosomal subunit protein L34 [Herminiimonas arsenicoxydans]
 gb|ABR91648.1| 50S ribosomal protein L34 [Janthinobacterium sp. Marseille]
          Length = 44

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/44 (95%), Positives = 43/44 (97%)

Query: 1  MKRTYQPSVVRRKRTHGFRARMATRGGRAVINARRAKGRKRLAA 44
          MKRTYQPSVVRRKRTHGFR RMATRGGRAV+NARRAKGRKRLAA
Sbjct: 1  MKRTYQPSVVRRKRTHGFRVRMATRGGRAVLNARRAKGRKRLAA 44