BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0735.p (551 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004755092.1| OxaI/YidC membrane insertion protein [Collim... 842 0.0 ref|YP_003777712.1| inner-membrane transmembrane protein [Herbas... 802 0.0 ref|YP_001355384.1| preprotein translocase YidC subunit [Janthin... 790 0.0 ref|YP_001101691.1| preprotein translocase membrane subunit [Her... 741 0.0 ref|YP_002007194.1| inner membrane protein translocase component... 708 0.0 >ref|YP_004755092.1| OxaI/YidC membrane insertion protein [Collimonas fungivorans Ter331] gb|AEK64269.1| OxaI/YidC membrane insertion protein [Collimonas fungivorans Ter331] Length = 553 Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/554 (74%), Positives = 457/554 (82%), Gaps = 6/554 (1%) Query: 1 MDIKRTVLWVVFSFSLLLLWDSWQRHNGKPSMFFPTTTQEATPAAAGADPSKSPVPQAAG 60 MDIKRTVLWVVFS SLL LWD WQRHNG+PS+FFP T Q PAA+G P+ + V +A Sbjct: 1 MDIKRTVLWVVFSVSLLFLWDQWQRHNGQPSLFFPGTAQ-TVPAASG--PANAVVSTSAD 57 Query: 61 AWTGATAGAADVAGGLPA---AKGETITITTDVVKADIDTVGGELKRLELLKHRDTVDPT 117 + A A AKGE ITITTDVVKA+IDTVGG LKRLELL +DTVDPT Sbjct: 58 VPQASAAAAPATGAVPATAADAKGEIITITTDVVKANIDTVGGVLKRLELLTQKDTVDPT 117 Query: 118 KNLVLFDSSAGHTYLAESGLIGGPFPTHKSIFTAKPGARALDNGNEVQLVLEAQENGVKL 177 KNLVLFDS A TYLAE+GLIGG FP H S F A PGAR LDNGN++QLVLE+ E GVKL Sbjct: 118 KNLVLFDSGANRTYLAETGLIGGAFPNHHSPFVALPGARTLDNGNQIQLVLESTEGGVKL 177 Query: 178 TKTYTFKRGDYSIDLKHTVTNDSAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYTD 237 TK YTFKRGDY+ID+KH VTNDS AAI+PSLYL+L RDG+ P GE F TFTG AVYTD Sbjct: 178 TKVYTFKRGDYTIDVKHIVTNDSGAAISPSLYLRLKRDGHAPEGEQRFVHTFTGAAVYTD 237 Query: 238 ADKFQKLTFEKIEEGKEQHANKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLYA 297 A+KFQK F+KIE+GK HA KADNGW A++QHYFVSA IP +KA R+I T+KI TNLYA Sbjct: 238 ANKFQKFAFDKIEDGKADHATKADNGWFAIIQHYFVSAFIPQDKAPREIKTEKIATNLYA 297 Query: 298 VGNILPLGTVAPGASVTMDARLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLMI 357 V NILPLGT+APGA+VTMDARLYSGP+ S LE PGLELVKDYGWLTIIAKPIFWLM Sbjct: 298 VSNILPLGTIAPGATVTMDARLYSGPEIQSDLEAIAPGLELVKDYGWLTIIAKPIFWLMT 357 Query: 358 HIHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMN 417 IH +GNWGWTII LT+LIK FFPLSAASYRSMAKMK VTPKMT+IRER K +PQ MN Sbjct: 358 QIHKVLGNWGWTIIALTVLIKLAFFPLSAASYRSMAKMKLVTPKMTSIRERFKSEPQKMN 417 Query: 418 REMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPDPFY 477 + MM LYKTEKINPLGGCLPIV+QIPVFISLYWVLLASVE+R APWLGWIHDL APDPFY Sbjct: 418 QAMMELYKTEKINPLGGCLPIVVQIPVFISLYWVLLASVEIRNAPWLGWIHDLAAPDPFY 477 Query: 478 ILPVLMAVSMFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLVLYWVVNNVLSIT 537 ILPV+MA+SMFIQTKLNPTPPDP+QAKVMMFMP++FSVMFFFFPSGLVLYWV NNVLSI Sbjct: 478 ILPVVMAISMFIQTKLNPTPPDPMQAKVMMFMPLIFSVMFFFFPSGLVLYWVTNNVLSIA 537 Query: 538 QQWVITRKLQAGKA 551 QQWVITRK+ AG A Sbjct: 538 QQWVITRKMGAGPA 551 >ref|YP_003777712.1| inner-membrane transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65804.1| inner-membrane transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/542 (75%), Positives = 453/542 (83%), Gaps = 19/542 (3%) Query: 25 RHNGKPSMFFPTT--TQE---ATPAAAGADPSKSPVPQAAGAWTGATAGAADVAGGLPAA 79 RHNG SMFFP+ TQE A PAA A P+ SPVPQA GA GA DVA A Sbjct: 2 RHNGHQSMFFPSANPTQEQAAANPAAPTASPTGSPVPQAGTPAPGAVPGA-DVAAT--AT 58 Query: 80 KGETITITTDVVKADIDTVGGELKRLELLKHRDTVDPTKNLVLFDSSAGHTYLAESGLIG 139 KGETI ITTD+VKA IDTVGGELKRLELLK D VDPTKN+VLFDS GH YLAESGLIG Sbjct: 59 KGETIVITTDLVKASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIG 118 Query: 140 GPFPTHKSIFTAKPGARALDNGNEVQLVLEAQENGVKLTKTYTFKRGDYSIDLKHTVTND 199 GPFP HK+IFTA+ G R LDNGNE+QLVL A + GVKLTKTYTFKR Y ID+KHTVTN Sbjct: 119 GPFPNHKTIFTAQAGPRTLDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVTNT 178 Query: 200 SAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYTDADKFQKLTFEKIEEGKEQHANK 259 + AAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVY++++ F+KL FEKI GK+QH NK Sbjct: 179 TGAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHVNK 238 Query: 260 ADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLYAVGNILPLGTVAPGASVTMDARL 319 DNGWIA+VQHYFVSA IPP+ AQRD+F+KK+G NLYAVG+ILPLGTVAP ASVTMD++L Sbjct: 239 TDNGWIAMVQHYFVSAFIPPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDSQL 298 Query: 320 YSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLMIHIHAYVGNWGWTIILLTMLIKA 379 YSGP S L+ PGL+LV+DYG LT+IA+PIFWLM HIH VGNWGWTIILLT+LIK Sbjct: 299 YSGPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLIKL 358 Query: 380 VFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNREMMSLYKTEKINPLGGCLPIV 439 +FFPLSAASYRSMAKMKAV+PKM AIRERHKGDPQAMNREMM+LYKTEKINPLGGCLPI Sbjct: 359 IFFPLSAASYRSMAKMKAVSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLPIA 418 Query: 440 IQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPD-----------PFYILPVLMAVSMF 488 IQIPVFI+LY VLLASVEMRGAPWLGW+HDLTAPD P +LP++MA SMF Sbjct: 419 IQIPVFIALYSVLLASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMF 478 Query: 489 IQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLVLYWVVNNVLSITQQWVITRKLQA 548 +QTKLNPTPPDPVQAKVMMFMP+VFS MFFFFPSGLVLYWV NN+LSI QQWVITR +++ Sbjct: 479 LQTKLNPTPPDPVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQWVITRNIES 538 Query: 549 GK 550 GK Sbjct: 539 GK 540 >ref|YP_001355384.1| preprotein translocase YidC subunit [Janthinobacterium sp. Marseille] sp|A6T4D7.1|OXAA_JANMA RecName: Full=Inner membrane protein oxaA gb|ABR88618.1| preprotein translocase YidC subunit [Janthinobacterium sp. Marseille] Length = 564 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/561 (67%), Positives = 449/561 (80%), Gaps = 16/561 (2%) Query: 1 MDIKRTVLWVVFSFSLLLLWDSWQRHNGKPSMFFPT-TTQEATPAAAGADPSKSPVPQAA 59 MDIKRTVLWVVFSFSLL+LWD++ R+ GKPS+FF TTQ A PAAA D + P A Sbjct: 1 MDIKRTVLWVVFSFSLLMLWDNYNRYTGKPSIFFDNPTTQAAKPAAATDDGKTAAAPTAD 60 Query: 60 GAWTGA-TAGAADVAGGLPAAKGETITITTDVVKADIDTVGGELKRLELLKHRDTVDPTK 118 + A A A V + K E +TITTD++KADIDTVGGE++ LELL H ++ D TK Sbjct: 61 VPTSSAHAANATGVPDSVAPTKSEIVTITTDLIKADIDTVGGEIRHLELLTHHESSDSTK 120 Query: 119 NLVLFDSSAGHTYLAESGLIGGPFPTHKSIFTAKPGARALDNGNEVQLVLEAQENGVKLT 178 ++VLFDS+ TYL ++GLIGG +P HKS+FT +PG R+L+ G++VQLVLEA++NGVKL Sbjct: 121 DIVLFDSTPPRTYLGQTGLIGGAYPNHKSLFTVRPGPRSLEAGDQVQLVLEAEQNGVKLV 180 Query: 179 KTYTFKRGDYSIDLKHTVTNDSAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYTDA 238 KTYTFKRG+Y ID+KH V N +AAAINPSLYLQLVRDG+K ES FYSTFTGPAVY+D+ Sbjct: 181 KTYTFKRGEYKIDIKHDVINKTAAAINPSLYLQLVRDGSKLNNESMFYSTFTGPAVYSDS 240 Query: 239 DKFQKLTFEKIEEGKEQHANKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLYAV 298 DKFQK+TFE IE+GK +H KA++GWIA+VQHYFVSA +PP R+ FTKK+ TNLYAV Sbjct: 241 DKFQKVTFESIEKGKIEHVVKAESGWIAMVQHYFVSAFVPPANVPREYFTKKLATNLYAV 300 Query: 299 GNILPLGTVAPGASVTMDARLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLMIH 358 G I+P+G VAPGA+ +MDA LYSGPQES LE PG ELVKDYGWLTIIAKPIFWLMI Sbjct: 301 GAIMPMGAVAPGATQSMDATLYSGPQESKRLEAVAPGFELVKDYGWLTIIAKPIFWLMIQ 360 Query: 359 IHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNR 418 IH +GNWGWTI++LT++IK FFPLSAASYRSMAKMK VTPKMT IR ++KG+PQ MN Sbjct: 361 IHQLLGNWGWTIVVLTIVIKLAFFPLSAASYRSMAKMKLVTPKMTEIRTKYKGEPQKMNA 420 Query: 419 EMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPDPFY- 477 MM LYK EKINPLGGC+PIVIQIPVFISLYWVLLASVEMR APWL WI DL +PD + Sbjct: 421 AMMELYKKEKINPLGGCMPIVIQIPVFISLYWVLLASVEMRNAPWL-WISDLASPDTLFG 479 Query: 478 ------------ILPVLMAVSMFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLV 525 ILP+LMA+SMFIQTKLNPTPPDP+QAKVMMFMPI FS+MFFFFP+GLV Sbjct: 480 SYMIGSFHLTIGILPILMAISMFIQTKLNPTPPDPIQAKVMMFMPIAFSLMFFFFPAGLV 539 Query: 526 LYWVVNNVLSITQQWVITRKL 546 LYWVVNN+LSI QQW I++K+ Sbjct: 540 LYWVVNNILSIAQQWTISKKM 560 >ref|YP_001101691.1| preprotein translocase membrane subunit [Herminiimonas arsenicoxydans] sp|A4GAN3.1|OXAA_HERAR RecName: Full=Inner membrane protein oxaA emb|CAL63570.1| Inner membrane protein OxaA [Herminiimonas arsenicoxydans] Length = 569 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/568 (64%), Positives = 438/568 (77%), Gaps = 18/568 (3%) Query: 1 MDIKRTVLWVVFSFSLLLLWDSWQRHNGKPSMFFPTTTQEATPAAAGADPSKSPVPQAAG 60 MDIKRTVLWV+FSFSLL+LWD++ R+ GKPS+FF +TT + A A + + A Sbjct: 1 MDIKRTVLWVIFSFSLLMLWDNYNRYTGKPSIFFDSTTTQQAAAPAATGNNAAKTADAPT 60 Query: 61 AWTGATAGAADVAG---GLPAAKGETITITTDVVKADIDTVGGELKRLELLKHRDTVDPT 117 A T A A+ G G A K E ITITTD++K IDT GGE++ LELLKH ++ D + Sbjct: 61 AATTAATSGANTPGVPDGAAAVKSEVITITTDLMKIGIDTAGGEVRHLELLKHHESGDES 120 Query: 118 KNLVLFDSSAGHTYLAESGLIGGPFPTHKSIFTAKPGARALDNGNEVQLVLEAQENGVKL 177 KN+VLFD + HTYL ++GLIGG +P HKS+F A PG R LD+ N+VQLVL++++ GVKL Sbjct: 121 KNVVLFDENGQHTYLGQTGLIGGAYPNHKSMFAAVPGPRTLDSANQVQLVLQSEQQGVKL 180 Query: 178 TKTYTFKRGDYSIDLKHTVTNDSAAAINPSLYLQLVRDGNKPGGESHFY-STFTGPAVYT 236 KT+TFKRG+Y +D+KH V N+++ AI PSLYLQLV DG+ GG S F S FTGPA+YT Sbjct: 181 IKTFTFKRGEYKVDIKHDVVNNTSTAITPSLYLQLVHDGSALGGGSMFMASAFTGPAIYT 240 Query: 237 DADKFQKLTFEKIEEGKEQHANKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLY 296 +ADKFQK+TFE IE+GK +HA K ++GWIALVQHYFVSA +PP R+ FTKK+ TNLY Sbjct: 241 EADKFQKVTFESIEKGKAEHAMKGESGWIALVQHYFVSAFVPPANTPREYFTKKLATNLY 300 Query: 297 AVGNILPLGTVAPGASVTMDARLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLM 356 AVG ILP+GTVAPGA+ +MD +YSGPQES LE PG ELVKDYGWLTIIAKPIFWLM Sbjct: 301 AVGTILPMGTVAPGATASMDTTMYSGPQESKRLEAVAPGFELVKDYGWLTIIAKPIFWLM 360 Query: 357 IHIHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAM 416 + IH +GNWGWTII+LT++IK FFPLSAA YRSMAKMK VTPKMT IR R+KG+PQ M Sbjct: 361 MQIHQILGNWGWTIIVLTIVIKLAFFPLSAAGYRSMAKMKLVTPKMTDIRTRYKGEPQKM 420 Query: 417 NREMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPDPF 476 N MM LYK EKINP+GGC P+++QIPVFISLYWVLLASVE+R A WL WIHDL APD Sbjct: 421 NAAMMELYKKEKINPIGGCFPMLVQIPVFISLYWVLLASVEIRNASWL-WIHDLAAPDIL 479 Query: 477 Y-------------ILPVLMAVSMFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSG 523 + ILP+LMA+SMFIQTKLNPTPPDP+QAKVMMFMPI FSVMFFFFP+G Sbjct: 480 FGSYHIGTFHLTIGILPILMAISMFIQTKLNPTPPDPIQAKVMMFMPIAFSVMFFFFPAG 539 Query: 524 LVLYWVVNNVLSITQQWVITRKLQAGKA 551 LVLYWVVNN+LSI QQW I KL GKA Sbjct: 540 LVLYWVVNNILSIAQQWFINEKLLGGKA 567 >ref|YP_002007194.1| inner membrane protein translocase component yidc [Cupriavidus taiwanensis LMG 19424] sp|B3R883.1|OXAA_CUPTR RecName: Full=Inner membrane protein oxaA emb|CAQ71133.1| preprotein translocase, cooperates with SecYEG and SecDFyajC translocon, membrane component [Cupriavidus taiwanensis LMG 19424] Length = 559 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/558 (62%), Positives = 424/558 (75%), Gaps = 12/558 (2%) Query: 1 MDIKRTVLWVVFSFSLLLLWDSWQRHNGKPSMFFPTTTQEATPAAAGA-------DPSKS 53 MDIKRT+LWV+FS SL+LL+D+WQR NG SMFFP+TTQ+ +A A D K+ Sbjct: 1 MDIKRTILWVIFSMSLVLLYDNWQRANGHASMFFPSTTQQQAASAPAASGAAAQGDVPKA 60 Query: 54 PVPQAAGAWTGATAGAADVAGGLPAAKGETITITTDVVKADIDTVGGELKRLELLKHRDT 113 V A G T A A GE I +TTD V+A+IDT GG + RLELLK + Sbjct: 61 NVQPATG--TSAAPAAGAAPQAAAQPTGEKIVVTTDTVRAEIDTAGGIVSRLELLKEHE- 117 Query: 114 VDPTKNLVLFDSSAGHTYLAESGLIGGPFPTHKSIFTAKPGARALDNGNEVQLVLEAQEN 173 K +VLF+ TY+A SGLIGG P H ++FTA PG RALD +VQ+VL ++N Sbjct: 118 -KDGKPVVLFERDNVRTYMARSGLIGGDLPNHTTVFTAAPGPRALDGAEQVQVVLTGEKN 176 Query: 174 GVKLTKTYTFKRGDYSIDLKHTVTNDSAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPA 233 GVKL KTYTF++G Y +D K VTN A ++P+LYL+L RDG+K +S FYSTFTGPA Sbjct: 177 GVKLVKTYTFRKGSYVVDSKFDVTNAGTAPVSPTLYLELARDGSKVE-QSQFYSTFTGPA 235 Query: 234 VYTDADKFQKLTFEKIEEGKEQHANKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGT 293 +YTDADK+ KL+FE I +GK A+NGW+A+VQHYF SA IP + + ++I Sbjct: 236 IYTDADKYHKLSFEDIAKGKATVPAAANNGWVAMVQHYFASAWIPQTGKEHSFYVQQIDP 295 Query: 294 NLYAVGNILPLGTVAPGASVTMDARLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIF 353 NLY VG PLG +APGA+V+ DARL++GPQE +LEK PGLELVKDYGWLTI+AKP+F Sbjct: 296 NLYRVGIQQPLGELAPGATVSTDARLFAGPQEEHMLEKIAPGLELVKDYGWLTILAKPLF 355 Query: 354 WLMIHIHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDP 413 WL+ +H ++GNWGW+II LT+LIK VFFPLSAASY+SM KMK + P+MT+IRER+K DP Sbjct: 356 WLLEKLHGFLGNWGWSIIALTVLIKLVFFPLSAASYKSMGKMKDLQPRMTSIRERYKNDP 415 Query: 414 QAMNREMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAP 473 Q MN+EMM+LY+TEK+NPLGGCLPIVIQIPVFI+LYWVLL+SVEMRGAPWLGWIHDL+ P Sbjct: 416 QKMNQEMMALYRTEKVNPLGGCLPIVIQIPVFIALYWVLLSSVEMRGAPWLGWIHDLSVP 475 Query: 474 DPFYILPVLMAVSMFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLVLYWVVNNV 533 DPFYILP++MAVSMF+QTKLNPTPPDPVQAKVMM MP+VFSVMFFFFP+GLVLYWVVNN+ Sbjct: 476 DPFYILPIVMAVSMFVQTKLNPTPPDPVQAKVMMIMPLVFSVMFFFFPAGLVLYWVVNNI 535 Query: 534 LSITQQWVITRKLQAGKA 551 LSI QQW I R L GKA Sbjct: 536 LSIAQQWQINRMLGKGKA 553