BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0730.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777706.1| DNA recombination-dependent growth factor C ... 451 e-125 ref|YP_004754937.1| DNA recombination-dependent growth factor C ... 390 e-107 sp|A4G416.2|RDGC_HERAR RecName: Full=Recombination-associated pr... 386 e-105 ref|ZP_08274559.1| DNA recombination-dependent growth factor C [... 381 e-104 ref|YP_001099380.1| recombination associated protein [Herminiimo... 378 e-103 >ref|YP_003777706.1| DNA recombination-dependent growth factor C protein [Herbaspirillum seropedicae SmR1] gb|ADJ65798.1| DNA recombination-dependent growth factor C protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/255 (84%), Positives = 238/255 (93%) Query: 1 VHVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELL 60 VHVVNRQ L+KLDTEKKLLPSTVINQVTKARAAELEEQQGF PGRKQTKELKEQVTDELL Sbjct: 54 VHVVNRQLLMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELL 113 Query: 61 PRAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSM 120 PRAFS+VRSTW WIDPVNGWL+VDAGSP KAEEVLKLL KAIPKFPLETLRTV SP ++M Sbjct: 114 PRAFSVVRSTWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAM 173 Query: 121 TDWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTW 180 TDWLASDEAP+GFTVDQDTELR++ +SKATVR+VRHTLE ED++RHIE+GKQCTRLALTW Sbjct: 174 TDWLASDEAPNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIEAGKQCTRLALTW 233 Query: 181 NDRVSFVLTENLSVKKIAPLDVLKEDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEAL 240 D+VSFVLTENLSVK+IAPLDVLKEDS++ KNDDERFDGDFMLMTGE++K+L L++AL Sbjct: 234 ADKVSFVLTENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDAL 293 Query: 241 GGQLRENDGTAALAA 255 GGQLRENDG A AA Sbjct: 294 GGQLRENDGALAQAA 308 >ref|YP_004754937.1| DNA recombination-dependent growth factor C [Collimonas fungivorans Ter331] gb|AEK64114.1| DNA recombination-dependent growth factor C [Collimonas fungivorans Ter331] Length = 299 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/243 (74%), Positives = 215/243 (88%) Query: 1 VHVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELL 60 VH VNRQ ++ L TEKKLLP+TVINQVTKARAAE+EEQQG+APGRKQ K+LKEQVTDELL Sbjct: 54 VHSVNRQMMILLGTEKKLLPATVINQVTKARAAEIEEQQGYAPGRKQLKDLKEQVTDELL 113 Query: 61 PRAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSM 120 PRAFSI R+TW WIDPVNGWL++DA SP KAEE+LKLLL ++ K + +LRT SPL+SM Sbjct: 114 PRAFSIQRNTWVWIDPVNGWLVIDAASPTKAEEILKLLLASVDKLQISSLRTAHSPLTSM 173 Query: 121 TDWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTW 180 T+WLASDEAP GFTVDQDTELRA+G+ KATVR+VRHT+E +DV+RHI SGKQCTRLA+TW Sbjct: 174 TNWLASDEAPHGFTVDQDTELRAAGEGKATVRYVRHTIEADDVRRHIASGKQCTRLAMTW 233 Query: 181 NDRVSFVLTENLSVKKIAPLDVLKEDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEAL 240 D VSFVLTE+L++K+IAPLDVLKE +D ++KNDDERFD D MLMTGE+SKML DL+ AL Sbjct: 234 ADHVSFVLTESLAIKRIAPLDVLKEGNDTSSKNDDERFDSDMMLMTGELSKMLGDLVFAL 293 Query: 241 GGQ 243 GG+ Sbjct: 294 GGE 296 >sp|A4G416.2|RDGC_HERAR RecName: Full=Recombination-associated protein rdgC emb|CAL61253.2| Recombination-associated protein RdgC [Herminiimonas arsenicoxydans] Length = 300 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 176/243 (72%), Positives = 218/243 (89%) Query: 1 VHVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELL 60 V+ +N+Q +L L TEKKLLP+TVINQVTK +AAE+EEQQGF PGRKQ KELKE VTDELL Sbjct: 54 VYTLNKQIMLLLGTEKKLLPTTVINQVTKIKAAEIEEQQGFKPGRKQMKELKEDVTDELL 113 Query: 61 PRAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSM 120 PRAFSI R TW WIDPVNGWL+VDAGSP KA+EV+KLL+K++ K PL+TL V+SP+++M Sbjct: 114 PRAFSIWRQTWVWIDPVNGWLVVDAGSPAKADEVIKLLIKSVDKLPLDTLHVVQSPVAAM 173 Query: 121 TDWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTW 180 T WL +DEAPSGFTVDQDTELR++G+ KATVR+VRHTLE EDVQRHI +GKQCTRLA++W Sbjct: 174 TQWLLTDEAPSGFTVDQDTELRSTGEGKATVRYVRHTLEAEDVQRHIAAGKQCTRLAMSW 233 Query: 181 NDRVSFVLTENLSVKKIAPLDVLKEDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEAL 240 D++SFVLTE+L++K++APLDV+KE++D TA+NDDERFD D MLMTGE+S+MLADL++AL Sbjct: 234 ADKISFVLTESLAIKRVAPLDVIKENTDTTAQNDDERFDSDVMLMTGELSRMLADLVQAL 293 Query: 241 GGQ 243 GG+ Sbjct: 294 GGE 296 >ref|ZP_08274559.1| DNA recombination-dependent growth factor C [Oxalobacteraceae bacterium IMCC9480] gb|EGF31970.1| DNA recombination-dependent growth factor C [Oxalobacteraceae bacterium IMCC9480] Length = 283 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 176/245 (71%), Positives = 215/245 (87%), Gaps = 1/245 (0%) Query: 1 VHVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELL 60 VH VN+Q L+ L TEKKLLP++VINQV KARA ++EEQQGF PGRKQ KE+KEQVTDELL Sbjct: 38 VHTVNKQLLIALGTEKKLLPASVINQVAKARATDIEEQQGFKPGRKQMKEIKEQVTDELL 97 Query: 61 PRAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSM 120 PRAFSI R+TWTWIDPVNGWL++DAG+ GKA+EVLKLL+K I K P+E+L V+SP+++M Sbjct: 98 PRAFSINRTTWTWIDPVNGWLVIDAGTAGKADEVLKLLIKGIEKLPMESLHVVQSPVAAM 157 Query: 121 TDWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTW 180 T+WL +D AP GFTVDQDTELRA GDSKATVR+V+ T+EP DVQRHI GKQCTRLA+TW Sbjct: 158 TEWLMAD-APKGFTVDQDTELRAGGDSKATVRYVKQTIEPVDVQRHIADGKQCTRLAMTW 216 Query: 181 NDRVSFVLTENLSVKKIAPLDVLKEDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEAL 240 NDR+SFVLTE+L++K+I PLDV+KE +D A++DDERFDGD MLMTGE++KML DL+ AL Sbjct: 217 NDRISFVLTESLTIKRITPLDVIKESADTGARDDDERFDGDMMLMTGELAKMLDDLVFAL 276 Query: 241 GGQLR 245 GGQ++ Sbjct: 277 GGQMQ 281 >ref|YP_001099380.1| recombination associated protein [Herminiimonas arsenicoxydans] Length = 239 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 173/235 (73%), Positives = 212/235 (90%) Query: 9 LLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELLPRAFSIVR 68 +L L TEKKLLP+TVINQVTK +AAE+EEQQGF PGRKQ KELKE VTDELLPRAFSI R Sbjct: 1 MLLLGTEKKLLPTTVINQVTKIKAAEIEEQQGFKPGRKQMKELKEDVTDELLPRAFSIWR 60 Query: 69 STWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSMTDWLASDE 128 TW WIDPVNGWL+VDAGSP KA+EV+KLL+K++ K PL+TL V+SP+++MT WL +DE Sbjct: 61 QTWVWIDPVNGWLVVDAGSPAKADEVIKLLIKSVDKLPLDTLHVVQSPVAAMTQWLLTDE 120 Query: 129 APSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTWNDRVSFVL 188 APSGFTVDQDTELR++G+ KATVR+VRHTLE EDVQRHI +GKQCTRLA++W D++SFVL Sbjct: 121 APSGFTVDQDTELRSTGEGKATVRYVRHTLEAEDVQRHIAAGKQCTRLAMSWADKISFVL 180 Query: 189 TENLSVKKIAPLDVLKEDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEALGGQ 243 TE+L++K++APLDV+KE++D TA+NDDERFD D MLMTGE+S+MLADL++ALGG+ Sbjct: 181 TESLAIKRVAPLDVIKENTDTTAQNDDERFDSDVMLMTGELSRMLADLVQALGGE 235