BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0727.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001171420.1| flavoprotein [Pseudomonas stutzeri A1501] >g...   163   9e-39
ref|YP_003168939.1| hypothetical protein CAP2UW1_3760 [Candidatu...   162   2e-38
ref|YP_003777704.1| flavoprotein oxidoreductase [Herbaspirillum ...   162   2e-38
ref|YP_003048119.1| hypothetical protein Mmol_0682 [Methylotener...   161   4e-38
ref|YP_296664.1| hypothetical protein Reut_A2458 [Ralstonia eutr...   161   4e-38

>ref|YP_001171420.1| flavoprotein [Pseudomonas stutzeri A1501]
 gb|ABP78578.1| predicted flavoprotein [Pseudomonas stutzeri A1501]
          Length = 427

 Score =  163 bits (412), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 92/118 (77%), Gaps = 4/118 (3%)

Query: 1   MSSHLQSRLKLKGAKAALLRECTSAEDFRDMYKLAQAIKELPVKLRAPRPLDEAISSAGG 60
           M+ HL  +LKL G KAALLRE T A  F+    LA AIK LP++L  PRPLDEAISSAGG
Sbjct: 304 MAKHLHRQLKLDGVKAALLRELTDATTFQAPQALAAAIKALPIRLVRPRPLDEAISSAGG 363

Query: 61  VPFEAMQDAGEHHLMLRQLPGVFCAGEMLDWEAPTGGYLLTACFASGRKAAQGALRWL 118
           VPFE +    +  LMLR+LPGVFCAGEMLDWEAPTGGYLLTACFASGR AA+G LRWL
Sbjct: 364 VPFEEL----DEDLMLRRLPGVFCAGEMLDWEAPTGGYLLTACFASGRAAAEGMLRWL 417


>ref|YP_003168939.1| hypothetical protein CAP2UW1_3760 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gb|ACV37010.1| HI0933 family protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 439

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 92/121 (76%), Gaps = 4/121 (3%)

Query: 1   MSSHLQSRLKLKGAKAALLRECTSAEDFRDMYKLAQAIKELPVKLRAPRPLDEAISSAGG 60
           ++SHLQSRL+LKG K  LL EC SAE   D  +L  AIK LP++L APRPLDEAISSAGG
Sbjct: 303 LASHLQSRLRLKGVKLGLLHECLSAETMVDPQRLGAAIKCLPLRLLAPRPLDEAISSAGG 362

Query: 61  VPFEAMQDAGEHHLMLRQLPGVFCAGEMLDWEAPTGGYLLTACFASGRKAAQGALRWLGE 120
           V FEA+    +  LML  LPG+FCAGEMLDWEAPTGGYLLTAC ASGR A QG L WLG 
Sbjct: 363 VCFEAL----DERLMLSSLPGIFCAGEMLDWEAPTGGYLLTACLASGRAAGQGVLAWLGT 418

Query: 121 T 121
           T
Sbjct: 419 T 419


>ref|YP_003777704.1| flavoprotein oxidoreductase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65796.1| flavoprotein oxidoreductase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 432

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 7/136 (5%)

Query: 1   MSSHLQSRLKLKGAKAALLRECTSAEDFRDMYKLAQAIKELPVKLRAPRPLDEAISSAGG 60
           +SSHLQSRL LKG KA LLRE    + F DM KLA+AIK LP+ +  PRP+ EAISSAGG
Sbjct: 301 LSSHLQSRLHLKGVKAGLLRELLDKDTFADMDKLARAIKALPLTVLRPRPIAEAISSAGG 360

Query: 61  VPFEAMQDAGEHHLMLRQLPGVFCAGEMLDWEAPTGGYLLTACFASGRKAAQGALRWL-- 118
           V FEA+ DA    LMLR LPGVFCAGEMLDWEAPTGGYLLTACFA+G  A  G ++WL  
Sbjct: 361 VSFEALDDA----LMLRALPGVFCAGEMLDWEAPTGGYLLTACFATGHAAGHGVVQWLKA 416

Query: 119 -GETEADTAATKENTP 133
            G+     A+ +E  P
Sbjct: 417 EGQQAGLNASQEERQP 432


>ref|YP_003048119.1| hypothetical protein Mmol_0682 [Methylotenera mobilis JLW8]
 gb|ACT47592.1| HI0933 family protein [Methylotenera mobilis JLW8]
          Length = 416

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 92/118 (77%), Gaps = 4/118 (3%)

Query: 1   MSSHLQSRLKLKGAKAALLRECTSAEDFRDMYKLAQAIKELPVKLRAPRPLDEAISSAGG 60
           +SSHLQSRL +KG KA LLRE  SA+D+ +  KL+ AIK LP+KL + RP+DEAISSAGG
Sbjct: 299 LSSHLQSRLGIKGIKAGLLRELVSAQDYANPVKLSHAIKALPLKLSSTRPIDEAISSAGG 358

Query: 61  VPFEAMQDAGEHHLMLRQLPGVFCAGEMLDWEAPTGGYLLTACFASGRKAAQGALRWL 118
           V F  +    + HLML+ +PGVFCAGEMLDWEAPTGGYLLTACFASGR A  G + WL
Sbjct: 359 VDFAGL----DAHLMLKAMPGVFCAGEMLDWEAPTGGYLLTACFASGRSAGLGVIDWL 412


>ref|YP_296664.1| hypothetical protein Reut_A2458 [Ralstonia eutropha JMP134]
 gb|AAZ61820.1| HI0933-like protein:FAD dependent oxidoreductase [Ralstonia
           eutropha JMP134]
          Length = 424

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 87/118 (73%), Gaps = 4/118 (3%)

Query: 1   MSSHLQSRLKLKGAKAALLRECTSAEDFRDMYKLAQAIKELPVKLRAPRPLDEAISSAGG 60
           +SSHLQSRL + G KA LLREC S E   D   LA AIK LP++L   RP+DE ISSAGG
Sbjct: 307 LSSHLQSRLGITGVKAGLLRECLSKEAMHDTVTLAAAIKALPLRLLRARPIDEVISSAGG 366

Query: 61  VPFEAMQDAGEHHLMLRQLPGVFCAGEMLDWEAPTGGYLLTACFASGRKAAQGALRWL 118
           V FEAM      HLML  LPGVFCAGEMLDWEAPTGGYLLTACFASGR A QGA  WL
Sbjct: 367 VRFEAMNP----HLMLNALPGVFCAGEMLDWEAPTGGYLLTACFASGRTAGQGAADWL 420