BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0725.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777703.1| amino acid ABC transporter permease [Herbasp... 419 e-115 ref|YP_004751533.1| amino acid ABC transporter permease [Collimo... 405 e-111 ref|YP_002796217.1| amino acid ABC transporter, permease protein... 334 1e-89 ref|ZP_03697194.1| polar amino acid ABC transporter, inner membr... 317 2e-84 ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspi... 313 2e-83 >ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65795.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 247 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/247 (81%), Positives = 228/247 (92%) Query: 19 MDFRWSIIEGYAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLLRVT 78 MDFRWSII+GYAPLF KG MTL+V++ISI+ GTV+GLL+GMLRLA+VQHG WK+ L+ Sbjct: 1 MDFRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSM 60 Query: 79 KWIASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGIV 138 +W+A FYVAFFRGTPLFVQI+LIHFAVMPVL+ Q++GLLI+GELARTIKQDYGAF+SG V Sbjct: 61 RWLAGFYVAFFRGTPLFVQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTV 120 Query: 139 ALSLNAAAYISEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNEA 198 ALSLNA AYISEIFRAGIQSI+RGQSYAA+SLGM Y L MRY++LPQAFRRMLPPLGNEA Sbjct: 121 ALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEA 180 Query: 199 ITLLKDSSLVSTIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEKK 258 ITLLKDSSLVS IGLAELAYAARTVAG+Y+RYWEPYITISV+YFSMTICLA++VARLE K Sbjct: 181 ITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLESK 240 Query: 259 YSAPSRH 265 YSAP R Sbjct: 241 YSAPHRR 247 >ref|YP_004751533.1| amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK60710.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Collimonas fungivorans Ter331] Length = 247 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/244 (86%), Positives = 232/244 (95%) Query: 19 MDFRWSIIEGYAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLLRVT 78 MDFRWSII+GYAPLF+KGFFMT++VAVISI+ GT++GLLLGMLRLA+V+HG WK+ R+ Sbjct: 1 MDFRWSIIQGYAPLFVKGFFMTVQVAVISIIIGTILGLLLGMLRLAEVKHGPWKWPFRLL 60 Query: 79 KWIASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGIV 138 K +ASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAF+SGIV Sbjct: 61 KGLASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFISGIV 120 Query: 139 ALSLNAAAYISEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNEA 198 ALSLNA AYISEIFRAGIQSIDRGQSYAASSLGMGY+L MRY++LPQAFRRMLPPLGNEA Sbjct: 121 ALSLNAGAYISEIFRAGIQSIDRGQSYAASSLGMGYKLTMRYVVLPQAFRRMLPPLGNEA 180 Query: 199 ITLLKDSSLVSTIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEKK 258 ITLLKDSSLVS IGLAELAYAARTVAG+YSRYWEPYITISVVYF+MT+ LA LV RLE+K Sbjct: 181 ITLLKDSSLVSAIGLAELAYAARTVAGAYSRYWEPYITISVVYFAMTMILATLVGRLERK 240 Query: 259 YSAP 262 Y+AP Sbjct: 241 YAAP 244 >ref|YP_002796217.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Laribacter hongkongensis HLHK9] gb|ACO75208.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Laribacter hongkongensis HLHK9] Length = 247 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 165/247 (66%), Positives = 202/247 (81%), Gaps = 1/247 (0%) Query: 19 MDFRWSIIEGYAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLLR-V 77 MDFR+S+I YAPLFI G MTL + VI++V GT++GL +GM RLAD +HG+ KYLLR Sbjct: 1 MDFRFSMIVEYAPLFIDGVKMTLGITVIAVVLGTLIGLFMGMARLADARHGMGKYLLRYC 60 Query: 78 TKWIASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGI 137 KW A+ YV FFRGTPLFVQILL+HFA+MP L+H +G+LISG+LAR I+Q+YGAF SG+ Sbjct: 61 VKWPATAYVTFFRGTPLFVQILLVHFALMPTLVHPVDGILISGDLAREIRQNYGAFFSGL 120 Query: 138 VALSLNAAAYISEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNE 197 +AL+LNA AYI+EIFRAGI SID+GQ AA SLGM Y MR++++PQAFRRMLPPLGNE Sbjct: 121 LALTLNAGAYITEIFRAGILSIDKGQMEAARSLGMSYGQAMRFVVVPQAFRRMLPPLGNE 180 Query: 198 AITLLKDSSLVSTIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEK 257 AI LLKDSSLVS IGLAELA+AARTVAG YSRYWEPY+TIS +Y ++T+ +A +A LEK Sbjct: 181 AIMLLKDSSLVSAIGLAELAFAARTVAGVYSRYWEPYLTISFMYLALTMLMAWGIAALEK 240 Query: 258 KYSAPSR 264 +Y S Sbjct: 241 RYRVASH 247 >ref|ZP_03697194.1| polar amino acid ABC transporter, inner membrane subunit [Lutiella nitroferrum 2002] ref|YP_004847455.1| polar amino acid ABC transporter permease [Pseudogulbenkiania sp. NH8B] gb|EEG09680.1| polar amino acid ABC transporter, inner membrane subunit [Lutiella nitroferrum 2002] dbj|BAK77041.1| polar amino acid ABC transporter, permease protein [Pseudogulbenkiania sp. NH8B] Length = 247 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 152/247 (61%), Positives = 202/247 (81%), Gaps = 1/247 (0%) Query: 19 MDFRWSIIEGYAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLLR-V 77 M+FRW +I Y PLFI G MTL + +++++ GT++GL +G+ RLA+ +HG+ K +LR + Sbjct: 1 MNFRWEMITEYLPLFIDGAKMTLLITIVAVIFGTLIGLFMGVARLAEGKHGISKIVLRYL 60 Query: 78 TKWIASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGI 137 + A+ YV FFRGTPLFVQILL+HFA+MP+LIH +G+++SG++AR I+Q+YGAF+SG+ Sbjct: 61 VRLPATAYVTFFRGTPLFVQILLVHFALMPMLIHPVDGIILSGDIAREIRQNYGAFISGL 120 Query: 138 VALSLNAAAYISEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNE 197 +AL+LNA AYI+EIFRAGIQSID+GQ AA SLG+ Y M+ +I+PQAFRRMLPPLGNE Sbjct: 121 LALTLNAGAYITEIFRAGIQSIDKGQMEAARSLGLSYGQAMKAVIVPQAFRRMLPPLGNE 180 Query: 198 AITLLKDSSLVSTIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEK 257 AI LLKDSSLVS IGLAELA+AARTVAG YSRYWEPY+TIS +Y ++T+ +A + RLEK Sbjct: 181 AIMLLKDSSLVSAIGLAELAFAARTVAGVYSRYWEPYLTISFLYLALTMLMAWGIGRLEK 240 Query: 258 KYSAPSR 264 ++ SR Sbjct: 241 RFQIASR 247 >ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61594.1| ABC-type glutamine transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 250 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 150/240 (62%), Positives = 193/240 (80%), Gaps = 1/240 (0%) Query: 21 FRWSIIEGYAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLL-RVTK 79 F+W II Y PLF++G +MTL+ A+I ++AGT GL+LG+ RLA+ +HG WKY L + Sbjct: 5 FQWEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQ 64 Query: 80 WIASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGIVA 139 W FYV+F RGTPLFVQILLIHFA+MP+LI+ GL++SG+LAR I+ YGAF S ++A Sbjct: 65 WPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLA 124 Query: 140 LSLNAAAYISEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNEAI 199 ++LN+ AY+SEIFRAGIQSIDRGQS A+ SLGM Y +R ++LPQAFRRMLPPLGN AI Sbjct: 125 ITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNNAI 184 Query: 200 TLLKDSSLVSTIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEKKY 259 ++KDSSL S IGLAELAYAARTV+G+Y+RYWEPY+TISV+Y+ +T+ L+ LV LE +Y Sbjct: 185 AIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLEARY 244