BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0724.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751534.1| family 3 extracellular solute-binding protei... 400 e-109 ref|YP_003777702.1| amino acid ABC transporter/signal transducti... 378 e-103 ref|YP_004751536.1| glutamine transport system substrate-binding... 343 1e-92 ref|YP_001790182.1| extracellular solute-binding protein [Leptot... 324 1e-86 ref|YP_983660.1| extracellular solute-binding protein [Polaromon... 323 2e-86 >ref|YP_004751534.1| family 3 extracellular solute-binding protein [Collimonas fungivorans Ter331] gb|AEK60711.1| extracellular solute-binding protein, family 3 [Collimonas fungivorans Ter331] Length = 264 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/267 (73%), Positives = 227/267 (85%), Gaps = 4/267 (1%) Query: 1 MNKFFKQFAPALALVAAIAALSACGKKEEAAQAPAAAAAK-VYLVGVESAYAPFSAENEK 59 M K ++ P AL ++ A+ AC KKEE PAAAA + +Y+VGVESAYAPFSAENEK Sbjct: 1 MKKMLSRYLPLCALSMSLLAVGACSKKEET---PAAAAKQTLYVVGVESAYAPFSAENEK 57 Query: 60 KEVVGFDIDVMKALAQKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERKQTVDF 119 KEVVGFDID+MKA+A KIGIEVKF+PTPFEG FNFLAQGDRDLLISAITITDERKQTVDF Sbjct: 58 KEVVGFDIDLMKAIAAKIGIEVKFIPTPFEGIFNFLAQGDRDLLISAITITDERKQTVDF 117 Query: 120 SEPYFEASQLIAVPAADAKVQKFDDLKNLKVGVQSATSGDEIVQQLLGKNNPNIKRLDST 179 SEPYFEASQLIAVP + V++F+DLK +K+GVQSAT+GDE+VQ L+GKNNP+IKR DST Sbjct: 118 SEPYFEASQLIAVPQGNTSVKQFNDLKTMKIGVQSATTGDEVVQNLVGKNNPSIKRFDST 177 Query: 180 PLALKELETGGVDAVVADDAVVKNYITNNPSSKLRTVSDANFPKEYYGIAVRKGNTELLN 239 LALKELE+GGVDAVVADD VV+NYITNNPS+ V+D FPKEYYGIAVRKGNTELL Sbjct: 178 TLALKELESGGVDAVVADDPVVRNYITNNPSASFHVVTDGGFPKEYYGIAVRKGNTELLA 237 Query: 240 KVNKGMADLKADGTFDKISTQYFGARK 266 K+N+G+AD+KADG+F KI+ +YFG K Sbjct: 238 KINQGLADVKADGSFAKINEKYFGNGK 264 >ref|YP_003777702.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65794.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/270 (71%), Positives = 226/270 (83%), Gaps = 7/270 (2%) Query: 1 MNKFFKQFAPALALVAA---IAALSACGKKEEAAQAPAAAAA----KVYLVGVESAYAPF 53 M K F + A ALAL A + L+ACGK+E+ + AA A +VY+VGVESAYAPF Sbjct: 1 MIKMFTRHARALALTAGFVGMLGLAACGKQEDKSATAAAPQAAAPARVYVVGVESAYAPF 60 Query: 54 SAENEKKEVVGFDIDVMKALAQKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDER 113 S+ENE+K+VVGFDID+MKALA+KIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDER Sbjct: 61 SSENEQKDVVGFDIDIMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDER 120 Query: 114 KQTVDFSEPYFEASQLIAVPAADAKVQKFDDLKNLKVGVQSATSGDEIVQQLLGKNNPNI 173 K++V FSEPYF A+Q IA+PAAD KV K +DLK L VG QSATSGDE+VQQ+LGKN+ I Sbjct: 121 KKSVAFSEPYFVATQTIALPAADTKVSKMEDLKPLTVGTQSATSGDELVQQVLGKNSAKI 180 Query: 174 KRLDSTPLALKELETGGVDAVVADDAVVKNYITNNPSSKLRTVSDANFPKEYYGIAVRKG 233 KR DSTPLALKELE+GGVDAVVAD+ VVKNYI NNP+SKLRTV+D +FPKE YGIAVRK Sbjct: 181 KRFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAVRKD 240 Query: 234 NTELLNKVNKGMADLKADGTFDKISTQYFG 263 + ELL K+NKG+A++KADG+F IS QYFG Sbjct: 241 DPELLAKINKGLAEMKADGSFAAISAQYFG 270 >ref|YP_004751536.1| glutamine transport system substrate-binding protein [Collimonas fungivorans Ter331] gb|AEK60713.1| glutamine transport system substrate-binding protein [Collimonas fungivorans Ter331] Length = 276 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 174/262 (66%), Positives = 206/262 (78%), Gaps = 8/262 (3%) Query: 1 MNKFFKQFAPALALVAAIAALSACGKKEEAAQAPAAAAAKVYLVGVESAYAPFSAENEKK 60 MN+ F L L +L+ACGK+E + AA A YLVG E+ +APF +NE+K Sbjct: 14 MNRIFN-----LGLCVLALSLAACGKQE--PKTAAAPAPTEYLVGAEATFAPFEYQNEQK 66 Query: 61 EVVGFDIDVMKALAQKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERKQTVDFS 120 E+VGFD+DVM A+A K G ++KFV TPFEG FNFLAQGDRDLL SAITITDERKQTVDFS Sbjct: 67 EIVGFDVDVMNAIADKGGFKIKFVNTPFEGIFNFLAQGDRDLLASAITITDERKQTVDFS 126 Query: 121 EPYFEASQLIAVPAADAKVQKFDDLKNLKVGVQSATSGDEIVQQLLGKNNPNIKRLDSTP 180 EPYFEA+QLI VP ++KV KF DLKN+KVGVQSAT+GDEIVQ+ LGKNNPNIKRL+S Sbjct: 127 EPYFEANQLIVVPK-NSKVTKFADLKNMKVGVQSATTGDEIVQKELGKNNPNIKRLESAT 185 Query: 181 LALKELETGGVDAVVADDAVVKNYITNNPSSKLRTVSDANFPKEYYGIAVRKGNTELLNK 240 L +KELE GGV+AVV+D+ VVKNYI NNPS R +SD F KEYYGIAV+KGNTELL K Sbjct: 186 LVMKELEGGGVEAVVSDNGVVKNYIKNNPSEGFRLISDPAFSKEYYGIAVKKGNTELLAK 245 Query: 241 VNKGMADLKADGTFDKISTQYF 262 VNKG+A ++ADGT+DKI +YF Sbjct: 246 VNKGLAAIRADGTYDKIYAKYF 267 >ref|YP_001790182.1| extracellular solute-binding protein [Leptothrix cholodnii SP-6] gb|ACB33417.1| extracellular solute-binding protein family 3 [Leptothrix cholodnii SP-6] Length = 283 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 170/266 (63%), Positives = 207/266 (77%), Gaps = 9/266 (3%) Query: 6 KQFAPALALVAAIAALSACGKKEEAAQAPAAAAA-------KVYLVGVESAYAPFSAENE 58 ++F VAA L ACGKKEEAA A+AAA KVY+VG ++AYAPF +NE Sbjct: 7 RRFLKTAGFVAAALVLVACGKKEEAAAPAASAAAAPPPPPAKVYVVGTDAAYAPFELQNE 66 Query: 59 KKEVVGFDIDVMKALAQKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERKQTVD 118 K E+VGFDIDV+ A+A K GIEVKFV TP+EG FN L QGDRD L+S+ITIT+ERKQT+D Sbjct: 67 KGEIVGFDIDVVTAIAAKAGIEVKFVNTPWEGIFNALGQGDRDALVSSITITEERKQTMD 126 Query: 119 FSEPYFEASQLIAVPAADAKVQKFDDLKNLKVGVQSATSGDEIVQQLLGKNNPNIKRLDS 178 FS PYF+A QLIAV +KV KF DLK LKVGVQ+ T+GDE+V +LLGKN+ NIKR +S Sbjct: 127 FSAPYFDAQQLIAVKDT-SKVAKFADLKKLKVGVQTGTTGDEVVTKLLGKNSTNIKRFES 185 Query: 179 TPLALKELETGGVDAVVADDAVVKNYITNNPSSKLRTVSD-ANFPKEYYGIAVRKGNTEL 237 TPLALKEL++GGVDAVVAD+ VV +Y+ NNP+ K +TV+D +F E YGIAV+KGN EL Sbjct: 186 TPLALKELQSGGVDAVVADNGVVIHYVANNPADKFKTVADNTSFAPEQYGIAVKKGNAEL 245 Query: 238 LNKVNKGMADLKADGTFDKISTQYFG 263 L K+NKG+AD+KADGT+DKI QYFG Sbjct: 246 LEKINKGLADIKADGTYDKIYAQYFG 271 >ref|YP_983660.1| extracellular solute-binding protein [Polaromonas naphthalenivorans CJ2] gb|ABM38739.1| amino acid ABC transporter substrate-binding protein, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 285 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 162/265 (61%), Positives = 209/265 (78%), Gaps = 8/265 (3%) Query: 6 KQFAPALALVAAIAALSACGKKEEAAQAPAAAAA-------KVYLVGVESAYAPFSAENE 58 + F +++ A L+ACGK+E AA A A AA KVY+VG ++AYAPF ++NE Sbjct: 7 RHFLKTTSVLLAGLVLAACGKQEPAAPAATAPAATPPAAAAKVYVVGTDAAYAPFESQNE 66 Query: 59 KKEVVGFDIDVMKALAQKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERKQTVD 118 K E+VGFDIDV+KA AQK GIEVKFV TP+EG FN +AQGDRDLL+SAITIT ER+QT+D Sbjct: 67 KGEIVGFDIDVVKAAAQKAGIEVKFVNTPWEGIFNSVAQGDRDLLVSAITITPERRQTLD 126 Query: 119 FSEPYFEASQLIAVPAADAKVQKFDDLKNLKVGVQSATSGDEIVQQLLGKNNPNIKRLDS 178 FS PYF+A QLIAV + D+K+ KFDDLK LKVGVQ+ T+GDE++ +L GK++PN+KR +S Sbjct: 127 FSAPYFDAQQLIAVKS-DSKIAKFDDLKKLKVGVQNGTTGDEVITKLQGKDSPNVKRFES 185 Query: 179 TPLALKELETGGVDAVVADDAVVKNYITNNPSSKLRTVSDANFPKEYYGIAVRKGNTELL 238 TPLALKE+E GGVDAVVAD+ VV +Y+ NNP SK +T++D+ F E YGIAV+KGN ELL Sbjct: 186 TPLALKEMEGGGVDAVVADNGVVVHYVANNPGSKFKTIADSTFAAEQYGIAVKKGNAELL 245 Query: 239 NKVNKGMADLKADGTFDKISTQYFG 263 K+N+G+A +K DG++ +I TQYFG Sbjct: 246 EKINQGLAGIKEDGSYARIYTQYFG 270