BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0720.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777695.1| membrane protein [Herbaspirillum seropedicae... 413 e-113 ref|ZP_02243568.1| hypothetical protein Xoryp_13115 [Xanthomonas... 381 e-104 ref|YP_200839.1| hypothetical protein XOO2200 [Xanthomonas oryza... 380 e-103 ref|YP_451098.1| hypothetical protein XOO_2069 [Xanthomonas oryz... 378 e-103 ref|YP_001913550.1| inner membrane protein YeiH [Xanthomonas ory... 377 e-102 >ref|YP_003777695.1| membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65787.1| membrane protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/353 (63%), Positives = 273/353 (77%), Gaps = 12/353 (3%) Query: 10 STPSAPPAQLNRILPGLALSAALALASIEAGRLAWLQAHGFSALTIAIVLGMLVGNTVYP 69 +T ++P L+ L GLALS ALA A++ G + WLQ HGFSALT+AIVLG+++GNT+YP Sbjct: 4 ATQTSP---LHPALAGLALSGALAWAAMSLGNIGWLQDHGFSALTVAIVLGIVLGNTIYP 60 Query: 70 RVAADCSGGVAFSKQNLLRLGIVLYGLRLTFQDIAQVGVSGVLIDASMLMSTFAIAYFLG 129 R+ A C GV FSKQ LLR GI+LYG RLTFQDIA VG++GV+IDA+ML+STF +A+ +G Sbjct: 61 RLGASCGEGVRFSKQTLLRAGIILYGFRLTFQDIAHVGLAGVVIDAAMLLSTFGLAWLVG 120 Query: 130 VKVFKLDRNAVMLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVVFGSAAIFLYPL 189 KV KLDR+A +LIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVV+FGS AIFLYPL Sbjct: 121 TKVLKLDRDAALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPL 180 Query: 190 LHSLDFLRGHA----DFGVYIGSTVHEVAQVVAAARSIDDHTANTAVIAKMVRVMMLAPF 245 LH+L DFGVYIGSTVHEVAQV+AAARSID HTA+ AVI KMVRVMMLAPF Sbjct: 181 LHTLQAEPAWGLRLPDFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPF 240 Query: 246 LLILSACVQRSRSATTAAKGSNTSRLAGIPWFAFAFIGMVALNSLLPIPTAVTGALLDAD 305 LL+LS ++A T + + IPWFAFAFIG+V NS P+P A+ LL AD Sbjct: 241 LLMLSM-----KAAPTTSGHQHQHNKLSIPWFAFAFIGVVVFNSFFPLPAALNQLLLQAD 295 Query: 306 TFLLAMAMAALGLTTHLSSVRRAGMRSLLLGGLLFVWLIAGGGAVNAAITFLM 358 T +LAMAMAALGL+THLS++R AG++ ++LG +LF WL+ GG VN A+ L+ Sbjct: 296 TLMLAMAMAALGLSTHLSALRSAGIKPMILGAVLFAWLVVGGALVNGALGRLL 348 >ref|ZP_02243568.1| hypothetical protein Xoryp_13115 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 353 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/353 (57%), Positives = 259/353 (73%), Gaps = 12/353 (3%) Query: 19 LNRILPGLALSAALALASIEAGRLAWLQAHGFSALTIAIVLGMLVGNTVYPRVAADCSGG 78 + +++PGLAL+ LA S++ G+L WLQA+G SALT+AIVLGMLVGNTVYPR+ A+ G Sbjct: 1 MRQLVPGLALTGVLACISMQLGKLGWLQANGISALTLAIVLGMLVGNTVYPRLGANAGAG 60 Query: 79 VAFSKQNLLRLGIVLYGLRLTFQDIAQVGVSGVLIDASMLMSTFAIAYFLGVKVFKLDRN 138 V FSK NLLRLGI+LYGLRLTFQDI VG +GV IDA++L STF +A FLG++VF LDRN Sbjct: 61 VRFSKANLLRLGIILYGLRLTFQDIGNVGWTGVAIDATVLCSTFGLACFLGMRVFGLDRN 120 Query: 139 AVMLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVVFGSAAIFLYPLLHSLD---- 194 MLIGAGSSICGAAAV+A EPV+R +EQV +AV+TVVVFG+ A+FLYP+L+ L Sbjct: 121 TAMLIGAGSSICGAAAVLAAEPVVRGHAEQVMIAVATVVVFGTLAMFLYPVLYHLIAHYR 180 Query: 195 -FLRGHADFGVYIGSTVHEVAQVVAAARSIDDHTANTAVIAKMVRVMMLAPFLLILSACV 253 F +GV+ GST+HEVAQVVAA R++ + A TAVIAKMVRVMMLAPFL+ LSA + Sbjct: 181 WFDLSPTAYGVFAGSTIHEVAQVVAAGRAVSEQAATTAVIAKMVRVMMLAPFLVALSAYL 240 Query: 254 QRSRSATTAA------KGSNTSRLA-GIPWFAFAFIGMVALNSLLPIPTAVTGALLDADT 306 R + T A G T R IPWFA F+ + LNSL +P A+ ++D DT Sbjct: 241 SRDSAKHTEALDGDRGDGDATQRSDIVIPWFALGFVAVAGLNSLALLPHALVQQVIDIDT 300 Query: 307 FLLAMAMAALGLTTHLSSVRRAGMRSLLLGGLLFVWLIAGGGAVNAAITFLMH 359 LLAMAMA LGLTTH+S++R+AG++ L L +LF WL+ GG A+N IT +++ Sbjct: 301 VLLAMAMAGLGLTTHVSAIRKAGIKPLALAAILFAWLVCGGFALNVGITAVLN 353 >ref|YP_200839.1| hypothetical protein XOO2200 [Xanthomonas oryzae pv. oryzae KACC10331] gb|AAW75454.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 379 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/368 (55%), Positives = 263/368 (71%), Gaps = 20/368 (5%) Query: 11 TPSAPPAQLNRILPGLALSAALALASIEAGRLAWLQAHGFSALTIAIVLGMLVGNTVYPR 70 T + P ++ +++PGLAL+ LA S++ G+L WLQA+G SALT+AIVLGMLVGNTVYPR Sbjct: 13 TTAVPAHRMRQLVPGLALTGVLACISMQLGKLGWLQANGISALTLAIVLGMLVGNTVYPR 72 Query: 71 VAADCSGGVAFSKQNLLRLGIVLYGLRLTFQDIAQVGVSGVLIDASMLMSTFAIAYFLGV 130 + A+ GV FSK NLLRLGI+LYGLRLTFQDI VG +GV IDA++L STF +A FLG+ Sbjct: 73 LGANAGAGVRFSKANLLRLGIILYGLRLTFQDIGNVGWTGVAIDATVLCSTFGLACFLGM 132 Query: 131 KVFKLDRNAVMLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVVFGSAAIFLYPLL 190 +VF LDRN MLIGAGSSICGAAAV+A EPV+R +EQV +AV+TVVVFG+ A+FLYP+L Sbjct: 133 RVFGLDRNTAMLIGAGSSICGAAAVLAAEPVVRGHAEQVMIAVATVVVFGTLAMFLYPVL 192 Query: 191 HSLD-----FLRGHADFGVYIGSTVHEVAQVVAAARSIDDHTANTAVIAKMVRVMMLAPF 245 + L F +GV+ GST+HEVAQVVAA R++ + A TAVIAKMVRVMMLAPF Sbjct: 193 YHLIAHYRWFDLSPTAYGVFAGSTIHEVAQVVAAGRAVSEQAATTAVIAKMVRVMMLAPF 252 Query: 246 LLILSACVQRSRSATTAA--------------KGSNTSRLAGIPWFAFAFIGMVALNSLL 291 L+ LSA + R + T A G+ S + IPWFA F+ + LNSL Sbjct: 253 LVALSAYLSRDSAKHTEALDGDRGDGDGDGDGDGTQRSDIV-IPWFALGFVAVAGLNSLA 311 Query: 292 PIPTAVTGALLDADTFLLAMAMAALGLTTHLSSVRRAGMRSLLLGGLLFVWLIAGGGAVN 351 +P A+ ++D DT LLAMAMA LGLTTH+S++R+AG++ L L +LF WL+ GG A N Sbjct: 312 LLPHALVQQVIDIDTVLLAMAMAGLGLTTHVSAIRKAGIKPLALAAILFAWLVCGGFAFN 371 Query: 352 AAITFLMH 359 IT +++ Sbjct: 372 VGITAVLN 379 >ref|YP_451098.1| hypothetical protein XOO_2069 [Xanthomonas oryzae pv. oryzae MAFF 311018] dbj|BAE68824.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 355 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/356 (56%), Positives = 258/356 (72%), Gaps = 16/356 (4%) Query: 19 LNRILPGLALSAALALASIEAGRLAWLQAHGFSALTIAIVLGMLVGNTVYPRVAADCSGG 78 + +++PGLAL+ LA S++ G+L WLQA+G SALT+AIVLGMLVGNTVYPR+ A G Sbjct: 1 MRQLIPGLALTGVLACISMQLGKLGWLQANGISALTLAIVLGMLVGNTVYPRLGAKAGAG 60 Query: 79 VAFSKQNLLRLGIVLYGLRLTFQDIAQVGVSGVLIDASMLMSTFAIAYFLGVKVFKLDRN 138 V FSK NLLRLGI+LYGLRLTFQDI VG +GV IDA++L STF +A FLG++VF LDRN Sbjct: 61 VRFSKANLLRLGIILYGLRLTFQDIGNVGWTGVAIDATVLCSTFGLACFLGMRVFGLDRN 120 Query: 139 AVMLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVVFGSAAIFLYPLLHSLD---- 194 MLIGAGSSICGAAAV+A EPV+R +EQV +AV+TVVVFG+ A+FLYP+L+ L Sbjct: 121 TAMLIGAGSSICGAAAVLAAEPVVRGHAEQVMIAVATVVVFGTLAMFLYPVLYHLIAHYR 180 Query: 195 -FLRGHADFGVYIGSTVHEVAQVVAAARSIDDHTANTAVIAKMVRVMMLAPFLLILSACV 253 F +GV+ GST+HEVAQVVAA R++ + A TAVIAKMVRVMMLAPFL+ LSA + Sbjct: 181 WFDLSPTAYGVFAGSTIHEVAQVVAAGRAVSEQAATTAVIAKMVRVMMLAPFLVALSAYL 240 Query: 254 QRSRSATTAA----------KGSNTSRLAGIPWFAFAFIGMVALNSLLPIPTAVTGALLD 303 R + T A + S + IPWFA F+ + LNSL +P A+ ++D Sbjct: 241 SRDSAKHTEALDGDRGDGDGDATQRSDIV-IPWFALGFVAVAGLNSLALLPHALVQQVID 299 Query: 304 ADTFLLAMAMAALGLTTHLSSVRRAGMRSLLLGGLLFVWLIAGGGAVNAAITFLMH 359 DT LLAMAMA LGLTTH+S++R+AG++ L L +LF WL+ GG A+N IT +++ Sbjct: 300 IDTILLAMAMAGLGLTTHVSAIRKAGIKPLALAAILFAWLVCGGFALNVGITAVLN 355 >ref|YP_001913550.1| inner membrane protein YeiH [Xanthomonas oryzae pv. oryzae PXO99A] gb|ACD59018.1| inner membrane protein YeiH [Xanthomonas oryzae pv. oryzae PXO99A] Length = 355 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/356 (57%), Positives = 259/356 (72%), Gaps = 16/356 (4%) Query: 19 LNRILPGLALSAALALASIEAGRLAWLQAHGFSALTIAIVLGMLVGNTVYPRVAADCSGG 78 + +++PGLAL+ LA S++ G+L WLQA+G SALT+AIVLGMLVGNTVYPR+ A+ G Sbjct: 1 MRQLVPGLALTGVLACISMQLGKLGWLQANGISALTLAIVLGMLVGNTVYPRLGANAGAG 60 Query: 79 VAFSKQNLLRLGIVLYGLRLTFQDIAQVGVSGVLIDASMLMSTFAIAYFLGVKVFKLDRN 138 V FSK NLLRLGI+LYGLRLTFQDI VG +GV IDA++L STF +A FLG++VF LDRN Sbjct: 61 VRFSKANLLRLGIILYGLRLTFQDIGNVGWTGVAIDATVLCSTFGLACFLGMRVFGLDRN 120 Query: 139 AVMLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVVFGSAAIFLYPLLHSLD---- 194 MLIGAGSSICGAAAV+A EPV+R +EQV +AV+TVVVFG+ A+FLYP+L+ L Sbjct: 121 TAMLIGAGSSICGAAAVLAAEPVVRGHAEQVMIAVATVVVFGTLAMFLYPVLYHLIAHYR 180 Query: 195 -FLRGHADFGVYIGSTVHEVAQVVAAARSIDDHTANTAVIAKMVRVMMLAPFLLILSACV 253 F +GV+ GST+HEVAQVVAA R++ + A TAVIAKMVRVMMLAPFL+ LSA + Sbjct: 181 WFDLSPTAYGVFAGSTIHEVAQVVAAGRAVSEQAATTAVIAKMVRVMMLAPFLVALSAYL 240 Query: 254 QRSRSATTAA----------KGSNTSRLAGIPWFAFAFIGMVALNSLLPIPTAVTGALLD 303 R + T A G+ S + IPWFA F+ + LNSL +P A+ ++D Sbjct: 241 SRDSAKHTEALDGDRGDGDGDGTQRSDIV-IPWFALGFVAVAGLNSLALLPHALVQQVID 299 Query: 304 ADTFLLAMAMAALGLTTHLSSVRRAGMRSLLLGGLLFVWLIAGGGAVNAAITFLMH 359 DT LLAMAMA LGLTTH+S++R+AG++ L L +LF WL+ GG A N IT +++ Sbjct: 300 IDTVLLAMAMAGLGLTTHVSAIRKAGIKPLALAAILFAWLVCGGFAFNVGITAVLN 355