BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0716.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003384946.1| NmrA family protein [Spirosoma linguale DSM ... 169 8e-40 emb|CCB72926.1| NmrA family protein [Streptomyces cattleya NRRL ... 164 1e-38 ref|YP_001509637.1| NmrA family protein [Frankia sp. EAN1pec] >g... 157 2e-36 emb|CCA58384.1| hypothetical protein SVEN_5098 [Streptomyces ven... 149 4e-34 ref|YP_003344454.1| nucleoside-diphosphate-sugar epimerase [Stre... 126 5e-27 >ref|YP_003384946.1| NmrA family protein [Spirosoma linguale DSM 74] gb|ADB36147.1| NmrA family protein [Spirosoma linguale DSM 74] Length = 300 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 157/291 (53%), Gaps = 7/291 (2%) Query: 7 LVYGATGAQGGAVMSALRASGKKVRVLLRNTDGKSSFEAPGVEVAIGDLDSPAQLLEASR 66 LVYGATG+Q V+ L G + V R+ + S+ +A G V GD+ A+L EAS+ Sbjct: 10 LVYGATGSQASPVVWKLLEKGHRPYVFTRHPEKASAMQAAGAVVVEGDMTDAARLREASK 69 Query: 67 DVAGVYFALPLQFNADRAILWGRNAIDAAVAAKAPLMVFNTSIVGAAEAGQATGSVAIDI 126 + V +P FN+D GRNAIDAA A PL+V+NTS TG+ IDI Sbjct: 70 GMDAVALLVPF-FNSDPGTT-GRNAIDAAKDAGVPLLVYNTS---GLTPPAKTGNPTIDI 124 Query: 127 KSALERYLKQAPIPSIVLRPTLYLGNLTAPFATPSIVNDGVLAYPVPAGQKVSWISWEET 186 + L YL+ + IP+I+L+PT+Y+ N P+ P + +AYP P +V WI+ E+ Sbjct: 125 RIDLTNYLQASGIPAIILQPTVYMENWFGPYTAPYVAGQNQVAYPNPPDMRVGWIASEDV 184 Query: 187 AAYVVAALQRPDLAATRPSFDIGGAQAITGNELATAIGKAVGRSVSYFPLPIGQFEAGLS 246 A+V A++RP+LA + SF + G + +TG LA +GR V Y+ +P +F L Sbjct: 185 GAFVAEAIERPELAGS--SFVLSGPENLTGIALADQFSLGLGRPVRYYAMPPQEFGDILG 242 Query: 247 AAFGAETGGALANLYRYMTNPAHGDILNVDLRAARAEFAVPQTSIDSWAAQ 297 FG E G A+A+ Y+ + + ++ D+ A V T++ W A+ Sbjct: 243 GIFGPEGGAAVASEYQKLWDNPTRPVMYADMEPVLATLPVRLTTVREWVAK 293 >emb|CCB72926.1| NmrA family protein [Streptomyces cattleya NRRL 8057] Length = 296 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 149/295 (50%), Gaps = 6/295 (2%) Query: 7 LVYGATGAQGGAVMSALRASGKKVRVLLRNTDGKSSFEAPGVEVAIGDLDSPAQLLEASR 66 LV GATG QGGAV L G+ VR R PGV+V GDL + +A Sbjct: 4 LVIGATGFQGGAVARLLAEQGRTVRGFARTAPAADQ-AVPGVDVLTGDLGDAEAVRKAFA 62 Query: 67 DVAGVYFALPLQFNADRAILWGRNAIDAAVAAKAPLMVFNTSIVGAAEAGQATGSVAIDI 126 V +P ++ D + + RN AA +V N + A+ + TG + Sbjct: 63 GVTHASVLIPQVYDPDTVVRFARNVARAARDEGVARLVVNGNTRIPAQTTEFTG---FET 119 Query: 127 KSALERYLKQAPIPSIVLRPTLYLGNLTAPFATPSIVNDGVLAYPVPAGQKVSWISWEET 186 + ER L + +P+ +RP +YL NL +P A P++VNDGVLA+P+P + +W+S E+ Sbjct: 120 RRQAERILLDSGVPTTAIRPPVYLDNLYSPIAGPALVNDGVLAFPLPPSVRAAWLSHEDL 179 Query: 187 AAYVVAALQRPDLAATRPSFDIGGAQAITGNELATAIGKAVGRSVSYFPLPIGQFEAGLS 246 A VAAL D+A + D+GGA+ +TG ELA +GR + Y PLP +FEAGL+ Sbjct: 180 AKATVAALTTADVAGR--TIDLGGAETLTGPELAERFAAVLGREIRYVPLPPERFEAGLA 237 Query: 247 AAFGAETGGALANLYRYMTNPAHGDILNVDLRAARAEFAVPQTSIDSWAAQVPWK 301 AFGAET +A YR+ +L D A + V T + W A W+ Sbjct: 238 QAFGAETAAGIAGTYRWAATEEGAALLESDPAALESTLGVRPTPVADWIAARDWQ 292 >ref|YP_001509637.1| NmrA family protein [Frankia sp. EAN1pec] gb|ABW14731.1| NmrA family protein [Frankia sp. EAN1pec] Length = 318 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 149/303 (49%), Gaps = 12/303 (3%) Query: 2 QEKIYLVYGATGAQGGAVMSALRASGKKVRVLLRNTDGKSSFEAPGVEVAIGDLDSPAQL 61 + + YLV GA G QG AV AL A G VR R + G AP + +GDL A+L Sbjct: 3 ENRTYLVIGARGFQGDAVARALLAEGLDVRGFARGS-GAPVPGAPELPTVLGDL---AEL 58 Query: 62 LEASRDVAGVYFA---LPLQFNADRAILWGRNAIDAAVAAKAPLMVFNTSIVGAAEAGQA 118 + + GV A LPL ++ D + RN AA A +V+NT+ GQ Sbjct: 59 DDVRKAFVGVTHASVVLPLVYDVDLVQTYARNVAAAAREAGVTRLVYNTN---TPLPGQV 115 Query: 119 TGSVAIDIKSALERYLKQAPIPSIVLRPTLYLGNLTAPFATPSIVNDGVLAYPVPAGQKV 178 T A + + A E L +P++VLRP +YL NL +P+ P+++NDGVLAYP+P G +V Sbjct: 116 TPYAAYETRRAAEAVLADGDLPTVVLRPPVYLDNLFSPWNGPALINDGVLAYPLPEGCRV 175 Query: 179 SWISWEETAAYVVAALQRPDLAATRPSFDIGGAQAITGNELATAIGKAVGRSVSYFPLPI 238 SW+S + A +AAL L T +GG +TG ELA A+GR V+Y PL + Sbjct: 176 SWLSHADLATATLAALHGEGLEGT--VLSLGGPDTVTGGELAQVFAAALGRDVAYVPLEV 233 Query: 239 GQFEAGLSAAFGAETGGALANLYRYMTNPAHGDILNVDLRAARAEFAVPQTSIDSWAAQV 298 FE GL +A +YR+ ++ D V T I+ W A Sbjct: 234 NDFETGLRTVLATPAAAGVAGIYRWACTGGDAELFVADHDEVERVLGVRLTPINEWVAAQ 293 Query: 299 PWK 301 PWK Sbjct: 294 PWK 296 >emb|CCA58384.1| hypothetical protein SVEN_5098 [Streptomyces venezuelae ATCC 10712] Length = 308 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 150/297 (50%), Gaps = 12/297 (4%) Query: 8 VYGATGAQGGAVMSALRASGKKVRVLLRNTDGKSSFEAPGVEVAIGDLDSPAQLLEASRD 67 V GATG QGGAV L +VR L R PG GDL PA + Sbjct: 11 VVGATGFQGGAVARLLAERHHRVRALTRRPAADRP-PLPGAFFLGGDLGRPADVRRLFEG 69 Query: 68 VAGVYFALPLQFNADRAILWGRNAIDAAVAAKAPLMVFNTSI---VGAAEAGQATGSVAI 124 + +PL + DR + RN +AA+ A +VFN++ +G T A Sbjct: 70 TTHAFVTMPLVYGVDRVEAYARNIAEAALEAGTVRLVFNSNTRIPLGP------TDVPAF 123 Query: 125 DIKSALERYLKQAPIPSIVLRPTLYLGNLTAPFATPSIVNDGVLAYPVPAGQKVSWISWE 184 + + E L+ + +P +V+RP +YL NL +P+ PS+V+DGVLAYP+PA + +W+S Sbjct: 124 ETRRLAEWVLRDSGVPLVVIRPPVYLDNLFSPWNGPSLVDDGVLAYPLPASTRTAWLSHR 183 Query: 185 ETAAYVVAALQRPDLAATRPSFDIGGAQAITGNELATAIGKAVGRSVSYFPLPIGQFEAG 244 A +AAL R L +FDIGG +A+TG ELA A + +GR+V Y L FE G Sbjct: 184 GLAEAALAALTREGLDGR--TFDIGGGRALTGGELAAAFARGLGRAVRYEELDPAAFERG 241 Query: 245 LSAAFGAETGGALANLYRYMTNPAHGDILNVDLRAARAEFAVPQTSIDSWAAQVPWK 301 L+ G ET +A +Y +M + A ++ D + A+ ++ W ++ PW+ Sbjct: 242 LAELLGPETAAGVAGIYHFMASGADPLLMADDDGVSTEVLALDPPPVEEWVSRQPWQ 298 >ref|YP_003344454.1| nucleoside-diphosphate-sugar epimerase [Streptosporangium roseum DSM 43021] gb|ACZ91711.1| nucleoside-diphosphate-sugar epimerase [Streptosporangium roseum DSM 43021] Length = 304 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 145/285 (50%), Gaps = 7/285 (2%) Query: 23 LRASGKKVRVLLRNTDGKSSFEAPGVEVAIGDLDSPAQLLEASRDVAGVYFALPLQFNAD 82 L A G +VR L R+ +G+ GVE + DL P Q A LP+ + + Sbjct: 26 LLARGHRVRGLTRSAEGRDRLPE-GVEPFVADLGDPEQAKAAFAGTTHASVLLPMIYEPE 84 Query: 83 RAILWGRNAIDAAVAAKAPLMVFNTSIVGAAEAGQATGSVAIDIKSALERYLKQAPIPSI 142 R + RN DAA+A+ +VFNT G TG A + + A + + +P++ Sbjct: 85 RVASYVRNVADAALASGLRRLVFNT---GNRLPEAVTGVAAFETRRAAATAMLGSGVPTV 141 Query: 143 VLRPTLYLGNLTAPFATPSIVNDGVLAYPVPAGQKVSWISWEETAAYVVAALQRPDLAAT 202 VLRP +YL NL AP+ +V+DGVL YP+PA V+W+S ++ AA VAAL R LA T Sbjct: 142 VLRPPIYLDNLCAPWVAGPLVHDGVLRYPLPARSPVAWLSHDDLAAATVAALTRDGLAGT 201 Query: 203 RPSFDIGGAQAITGNELATAIGKAVGRSVSYFPLPIGQFEAGLSAAFGAETGGALANLYR 262 D+GG +TG ELA A +G V Y FEAGL+ A GA +A+ YR Sbjct: 202 --VLDLGGPDTVTGPELAAAFTAELGHRVDYAAQDPAGFEAGLAHALGAPAAAGVASTYR 259 Query: 263 YMTNPAHGDILNVDLRAARAEFAVPQTSIDSWAAQVPWKNLAESA 307 ++ A + VD +A + T + +W A PW+ LA +A Sbjct: 260 WIAG-AGETLYGVDRQAVEETLGIRLTPLRTWIAARPWRLLAGTA 303