BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0715.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_06965528.1| transcriptional regulator, HxlR family [Ktedo...   131   4e-29
ref|ZP_01311767.1| transcriptional regulator, HxlR family [Desul...   126   1e-27
ref|ZP_04680722.1| transcriptional regulator [Ochrobactrum inter...   125   2e-27
ref|YP_003975522.1| putative transcriptional regulator [Bacillus...   124   4e-27
ref|ZP_08424817.1| transcriptional regulator, HxlR family [Desul...   124   6e-27

>ref|ZP_06965528.1| transcriptional regulator, HxlR family [Ktedonobacter racemifer DSM
           44963]
 gb|EFH88639.1| transcriptional regulator, HxlR family [Ktedonobacter racemifer DSM
           44963]
          Length = 132

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 80/112 (71%), Gaps = 7/112 (6%)

Query: 3   AASPDR----CPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLRE 58
             SP R    C V+  LDL+GGKWK L+L+ L+ GTLRF QL+R +PEVTQRMLTLQLRE
Sbjct: 10  CPSPSRRRYGCGVEATLDLIGGKWKGLILFYLTYGTLRFNQLRRLLPEVTQRMLTLQLRE 69

Query: 59  LERDGLVRRVVYAEVPPRVEYSLTPPGRSLTPVLEQLGGW---FHQNVSALQ 107
           LE DG+V R VY E+PP+VEYSLTP GRSL P+L QL  W   + Q +  L 
Sbjct: 70  LEEDGIVHREVYREIPPKVEYSLTPFGRSLEPILTQLSTWGDTYRQKIGDLN 121


>ref|ZP_01311767.1| transcriptional regulator, HxlR family [Desulfuromonas acetoxidans
           DSM 684]
 gb|EAT16577.1| transcriptional regulator, HxlR family [Desulfuromonas acetoxidans
           DSM 684]
          Length = 124

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/91 (64%), Positives = 73/91 (80%)

Query: 8   RCPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLRELERDGLVRR 67
           RCPV++ LD++GGKWKSL+L+ L   TLRF QLQR +P +TQ+MLT QLR+LERDGLV R
Sbjct: 14  RCPVEVTLDVIGGKWKSLILWHLKHKTLRFSQLQRLLPRITQKMLTQQLRDLERDGLVFR 73

Query: 68  VVYAEVPPRVEYSLTPPGRSLTPVLEQLGGW 98
            VY EVPPRVEYSLT  G S+ P+L+Q+  W
Sbjct: 74  QVYPEVPPRVEYSLTELGCSVVPILDQMYEW 104


>ref|ZP_04680722.1| transcriptional regulator [Ochrobactrum intermedium LMG 3301]
 gb|EEQ96228.1| transcriptional regulator [Ochrobactrum intermedium LMG 3301]
          Length = 159

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 72/95 (75%)

Query: 9   CPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLRELERDGLVRRV 68
           C V+ A+ L+ GKWKS+VL+ L  GTLRF +L+R IP VTQRMLT QLRELE DGL+ R 
Sbjct: 47  CAVEAAISLIDGKWKSVVLFHLMGGTLRFNELRRQIPSVTQRMLTNQLRELEEDGLIERK 106

Query: 69  VYAEVPPRVEYSLTPPGRSLTPVLEQLGGWFHQNV 103
           VYA+VPP+VEYSL+P GRS+ P+L  L  W   N+
Sbjct: 107 VYAQVPPKVEYSLSPLGRSIEPILLALKKWGDANI 141


>ref|YP_003975522.1| putative transcriptional regulator [Bacillus atrophaeus 1942]
 gb|ADP34591.1| putative transcriptional regulator [Bacillus atrophaeus 1942]
          Length = 127

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 73/105 (69%)

Query: 9   CPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLRELERDGLVRRV 68
           CPV+  LD++GGKWK ++ Y +  G  RF + +R  P +TQRMLTLQLRELE DG+V R 
Sbjct: 14  CPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPNITQRMLTLQLRELEADGIVHRE 73

Query: 69  VYAEVPPRVEYSLTPPGRSLTPVLEQLGGWFHQNVSALQDYAHAG 113
           VY +VPP+VEYSLT  GR+L P++ Q+  W   N  AL+ Y  AG
Sbjct: 74  VYHQVPPKVEYSLTEFGRTLEPIVLQMKKWGDTNREALEAYRSAG 118


>ref|ZP_08424817.1| transcriptional regulator, HxlR family [Desulfovibrio africanus
           str. Walvis Bay]
 gb|EGJ51922.1| transcriptional regulator, HxlR family [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 133

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 75/91 (82%), Gaps = 1/91 (1%)

Query: 9   CPVDMALDLVGGKWKSLVLYRLSA-GTLRFGQLQRSIPEVTQRMLTLQLRELERDGLVRR 67
           C ++++L ++GGKWK ++L+RL   GTLRFG+L+R +P +TQ+MLT QLRELE DGLVRR
Sbjct: 15  CSIELSLLVIGGKWKPIILWRLGQDGTLRFGELKRIMPNITQKMLTQQLRELEADGLVRR 74

Query: 68  VVYAEVPPRVEYSLTPPGRSLTPVLEQLGGW 98
            VY EVPPRVEYSLT  GRS+TPVLEQL  W
Sbjct: 75  QVYPEVPPRVEYSLTDFGRSVTPVLEQLCKW 105