BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0705.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicil... 664 0.0 ref|YP_004754858.1| D-alanyl-D-alanine carboxypeptidase [Collimo... 568 e-160 ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthin... 547 e-153 ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Hermini... 544 e-152 ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobac... 521 e-146 >ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65777.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/384 (86%), Positives = 359/384 (93%), Gaps = 3/384 (0%) Query: 1 MKKLLAAIAATVLSFS---AAAQSLPPPSVAAKSWLLLDASSNQIIASQEADTRVEPASL 57 MKKLLAA+AATVLS S A+AQSLPPP+VAAKSWLLLDAS+NQ+IAS + DTRVEPASL Sbjct: 1 MKKLLAALAATVLSISTLTASAQSLPPPTVAAKSWLLLDASANQVIASSDPDTRVEPASL 60 Query: 58 VKLMTAYLAFAAVRDKRLDLNQEISVSVNAWKVDPSSSKMFIEPNKPVSVNNLLYGLISV 117 KLMTAYLAFAA+RDKRL L QE+SVSVNAWKVDPSSSKMFIEPNKPVS++NLLYGLISV Sbjct: 61 TKLMTAYLAFAALRDKRLSLEQEVSVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120 Query: 118 SGNDAAVALSEAVSGTTDAFVVLMNREAQRQGLTGTHFSNPHGLPSPDTYTTARDLAILC 177 SGNDAAVA++EAVSGT DAFV LMNREAQRQGLT THFSNPHGLPSPDTYTTARDL+ILC Sbjct: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILC 180 Query: 178 RNLINDFPDFYKIYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTDSAGYSLITSAK 237 RNLINDFP++YK YYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHT SAGYSLITSA Sbjct: 181 RNLINDFPEYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240 Query: 238 RPVANGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYSKGQAVDTPDVWKGSQ 297 RPV NGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLY+KGQ VDTPDVWKGSQ Sbjct: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQPVDTPDVWKGSQ 300 Query: 298 GKIKIGFMRDVYVTVPKGTADKIKPRVERNDPLIAPISENAKVGTLKIMIDDKAVTELPL 357 GKIK+GF DVY+T+PKGTADK+K +++RNDPLIAPI+E AKVGTLK+ IDDK VTELP+ Sbjct: 301 GKIKVGFKNDVYITIPKGTADKVKTKLDRNDPLIAPIAEGAKVGTLKVTIDDKTVTELPV 360 Query: 358 VALESVGPAGIFGRAWDSLRLLFK 381 VALESVGPAG GRAWDSLRL+FK Sbjct: 361 VALESVGPAGFIGRAWDSLRLMFK 384 >ref|YP_004754858.1| D-alanyl-D-alanine carboxypeptidase [Collimonas fungivorans Ter331] gb|AEK64035.1| D-alanyl-D-alanine carboxypeptidase [Collimonas fungivorans Ter331] Length = 381 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 279/382 (73%), Positives = 327/382 (85%), Gaps = 2/382 (0%) Query: 1 MKKLLAAIAATVLSFSAA-AQSLPPPSVAAKSWLLLDASSNQIIASQEADTRVEPASLVK 59 MKK+LAA+AATVLS S A AQ+LPPP+VAAKSWLLLD +SNQ++ASQ+ D R+EPASL K Sbjct: 1 MKKILAALAATVLSISVAFAQTLPPPTVAAKSWLLLDTTSNQVVASQDPDMRIEPASLAK 60 Query: 60 LMTAYLAFAAVRDKRLDLNQEISVSVNAWKVDPSSSKMFIEPNKPVSVNNLLYGLISVSG 119 +MTAY+ F A++DK++ L+Q ++VSV AWKVDPSSSKMFIEPN PVS+N+LLYGL+ VSG Sbjct: 61 IMTAYVVFDALKDKKITLDQMVNVSVRAWKVDPSSSKMFIEPNTPVSINDLLYGLMVVSG 120 Query: 120 NDAAVALSEAVSGTTDAFVVLMNREAQRQGLTGTHFSNPHGLPSPDTYTTARDLAILCRN 179 NDAAVAL+EAV+GT D+FV LMN EA+R G+ THF NPHGLPS DTY+TARDLA L + Sbjct: 121 NDAAVALAEAVAGTEDSFVALMNHEAERMGMKSTHFGNPHGLPSADTYSTARDLATLAAH 180 Query: 180 LINDFPDFYKIYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTDSAGYSLITSAKRP 239 +I DFP+FYKI S KK+TYN ITQPNRNRLLWLDPTVDGMKTGHT SAGYS+I SAKRP Sbjct: 181 VIVDFPEFYKID-STKKYTYNKITQPNRNRLLWLDPTVDGMKTGHTSSAGYSIIASAKRP 239 Query: 240 VANGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYSKGQAVDTPDVWKGSQGK 299 A G+RRL++VVIGT SD RTQE+QKLLNWGFQNFDAVKLY+KGQA+DTP VWKG++ + Sbjct: 240 NAGGDRRLLAVVIGTNSDGTRTQEAQKLLNWGFQNFDAVKLYAKGQAIDTPQVWKGAKSQ 299 Query: 300 IKIGFMRDVYVTVPKGTADKIKPRVERNDPLIAPISENAKVGTLKIMIDDKAVTELPLVA 359 IKIGF DVYVTVPKG ADKIKP +ER DPLIAPI +NAKVGT+K+ D K + E P+VA Sbjct: 300 IKIGFTHDVYVTVPKGIADKIKPVLERTDPLIAPIQQNAKVGTVKVNADGKTIAEFPVVA 359 Query: 360 LESVGPAGIFGRAWDSLRLLFK 381 LE V A IFGRAWDS+RLLFK Sbjct: 360 LEDVAQATIFGRAWDSIRLLFK 381 >ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp. Marseille] gb|ABR89520.1| D-alanyl-D-alanine carboxypeptidase (peptidase family s11) [Janthinobacterium sp. Marseille] Length = 382 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 268/380 (70%), Positives = 321/380 (84%), Gaps = 3/380 (0%) Query: 1 MKKLLAAIAATVLSFSAA-AQSLPPPSVAAKSWLLLDASSNQIIASQEADTRVEPASLVK 59 MKKLLAAIAATVLS S+A AQS+P P++ AKSWLLLDA+SNQ++AS E D R+EPASL K Sbjct: 1 MKKLLAAIAATVLSLSSAFAQSVPSPTINAKSWLLLDATSNQVLASNEPDMRIEPASLTK 60 Query: 60 LMTAYLAFAAVRDKRLDLNQEISVSVNAWKVDPSSSKMFIEPNKPVSVNNLLYGLISVSG 119 LMTAY+AF A++DK+LDLNQ I++S NAWKVDPSSSKMFIEP PV VN+LLYGLI SG Sbjct: 61 LMTAYVAFTAIQDKKLDLNQMITISTNAWKVDPSSSKMFIEPRVPVKVNDLLYGLIVQSG 120 Query: 120 NDAAVALSEAVSGTTDAFVVLMNREAQRQGLTGTHFSNPHGLPSPDTYTTARDLAILCRN 179 NDAAVA++EAV+GT DAFV LMNREA+R G+ THF+NPHGLPS Y+TARDL++L + Sbjct: 121 NDAAVAIAEAVAGTEDAFVALMNREAERMGMKSTHFANPHGLPSASNYSTARDLSVLASH 180 Query: 180 LINDFPDFYKIYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTDSAGYSLITSAKRP 239 LIND P+FYKI YS K++TYNNI QPNRNRLLWLDPTVDGMKTG+T AGY LI++AKRP Sbjct: 181 LINDHPEFYKI-YSTKEYTYNNIKQPNRNRLLWLDPTVDGMKTGYTQGAGYCLISTAKRP 239 Query: 240 VANGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYSKGQAVDTPDVWKGSQGK 299 GERRLISVV+GT+SDQ R QESQKLLNWGF NFD VKLY+K + + TP+VWKG+Q Sbjct: 240 NGTGERRLISVVLGTISDQARAQESQKLLNWGFLNFDTVKLYAKNEPIATPNVWKGTQNS 299 Query: 300 IKIGFMRDVYVTVPKGTADKIKPRVERNDPLIAPISENAKVGTLKIM-IDDKAVTELPLV 358 IKIGF RDVY+TVPKG A+ +KP + R DPL+API +N++VGT+K+M D K V+ELP++ Sbjct: 300 IKIGFTRDVYITVPKGVANTMKPVLARKDPLVAPIDKNSQVGTIKVMSADGKVVSELPVL 359 Query: 359 ALESVGPAGIFGRAWDSLRL 378 ALE VG AG+FGRA DS+RL Sbjct: 360 ALEQVGQAGLFGRALDSIRL 379 >ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans] emb|CAL63109.1| Putative penicillin-binding (D-alanyl-d-alanine carboxypeptidase) transmembrane protein [Herminiimonas arsenicoxydans] Length = 382 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 272/380 (71%), Positives = 318/380 (83%), Gaps = 3/380 (0%) Query: 1 MKKLLAAIAATVLSFSAA-AQSLPPPSVAAKSWLLLDASSNQIIASQEADTRVEPASLVK 59 MKKL AA+A VLS S A AQ +P P++AAKSWLLLDA+SNQI+AS EAD R+EPASL K Sbjct: 1 MKKLFAALAVAVLSLSTAFAQVVPAPTIAAKSWLLLDATSNQILASNEADVRIEPASLTK 60 Query: 60 LMTAYLAFAAVRDKRLDLNQEISVSVNAWKVDPSSSKMFIEPNKPVSVNNLLYGLISVSG 119 LMTAY+AF+A++DKR+ LNQ I+VS NAWKVDP SSKMFIEP PVSVN+LLYGLI SG Sbjct: 61 LMTAYVAFSAIQDKRIALNQMITVSTNAWKVDPESSKMFIEPRVPVSVNDLLYGLIVQSG 120 Query: 120 NDAAVALSEAVSGTTDAFVVLMNREAQRQGLTGTHFSNPHGLPSPDTYTTARDLAILCRN 179 NDAAVAL+EAV+GT DAF LMNREA+R G+ T F+NPHGLPSP+ Y+TARDLA+L + Sbjct: 121 NDAAVALAEAVAGTEDAFAALMNREAERMGMKSTRFANPHGLPSPNNYSTARDLAVLATH 180 Query: 180 LINDFPDFYKIYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTDSAGYSLITSAKRP 239 L++D P+FYKI YS K FTYN I Q NRNRLLWLDPTVDGMKTG+T +AGY LI++AKRP Sbjct: 181 LVSDHPEFYKI-YSTKDFTYNKIKQSNRNRLLWLDPTVDGMKTGYTQNAGYCLISTAKRP 239 Query: 240 VANGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYSKGQAVDTPDVWKGSQGK 299 ERRLISVVIGT SDQ R QESQKLLNWGFQNFDAVKLYSK A+DTP+VWKGSQ K Sbjct: 240 NGANERRLISVVIGTASDQARAQESQKLLNWGFQNFDAVKLYSKDVAIDTPNVWKGSQNK 299 Query: 300 IKIGFMRDVYVTVPKGTADKIKPRVERNDPLIAPISENAKVGTLKIM-IDDKAVTELPLV 358 IKIGF RDV+VTVPKG A KIKP + R DPL+API +N+ VGT+K+M ++K + ELP++ Sbjct: 300 IKIGFTRDVFVTVPKGMAGKIKPVLARKDPLVAPIDKNSPVGTVKVMSAENKVIAELPVL 359 Query: 359 ALESVGPAGIFGRAWDSLRL 378 ALE VGPAG+FGRA DS+RL Sbjct: 360 ALEQVGPAGMFGRALDSIRL 379 >ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32266.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium IMCC9480] Length = 403 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 258/384 (67%), Positives = 315/384 (82%), Gaps = 7/384 (1%) Query: 1 MKKLLAAIAATVLSFS------AAAQSLPPPSVAAKSWLLLDASSNQIIASQEADTRVEP 54 MK +AA+AATV+S S A+AQ++P P VAAKSWLLLD +S Q++ASQ+ R+EP Sbjct: 18 MKIFIAALAATVISLSSVFVQPASAQTMPAPIVAAKSWLLLDTTSGQVLASQDPTMRIEP 77 Query: 55 ASLVKLMTAYLAFAAVRDKRLDLNQEISVSVNAWKVDPSSSKMFIEPNKPVSVNNLLYGL 114 ASL K+MTAY+ F A+++KRLDL Q ++VSV AWKVDPSSSKMFI+P PVSV++LL+GL Sbjct: 78 ASLTKIMTAYVTFQAIKEKRLDLAQMVNVSVRAWKVDPSSSKMFIDPATPVSVDDLLHGL 137 Query: 115 ISVSGNDAAVALSEAVSGTTDAFVVLMNREAQRQGLTGTHFSNPHGLPSPDTYTTARDLA 174 + SGNDAAVAL+EAV+GT +AFVVLMNREA+R GLT T F NPHGLPS Y+TA+DL+ Sbjct: 138 MVQSGNDAAVALAEAVAGTEEAFVVLMNREAKRMGLTNTQFGNPHGLPSQSNYSTAQDLS 197 Query: 175 ILCRNLINDFPDFYKIYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTDSAGYSLIT 234 L +I D+P+FYKI SVK FTYN ITQPNRNRLLWLDP+VDGMKTGHT++AGY +I Sbjct: 198 KLAAAVITDYPEFYKID-SVKSFTYNKITQPNRNRLLWLDPSVDGMKTGHTEAAGYCIIA 256 Query: 235 SAKRPVANGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYSKGQAVDTPDVWK 294 SAKRP +GERRLISVV+G SDQ RTQESQKLLNWGFQNFD VKLY KGQ V+TP VWK Sbjct: 257 SAKRPNGSGERRLISVVLGANSDQSRTQESQKLLNWGFQNFDTVKLYGKGQPVETPPVWK 316 Query: 295 GSQGKIKIGFMRDVYVTVPKGTADKIKPRVERNDPLIAPISENAKVGTLKIMIDDKAVTE 354 GS+ IKIGF +D+YVTV KG A K+KP +ER DPL+API+ N+KVG +K+M+D K++ E Sbjct: 317 GSEKTIKIGFTQDIYVTVAKGVAAKMKPVLERKDPLVAPIAANSKVGMMKMMVDGKSIAE 376 Query: 355 LPLVALESVGPAGIFGRAWDSLRL 378 P++ALE+V AGIFGRAWDS+RL Sbjct: 377 FPILALENVNEAGIFGRAWDSIRL 400