BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0703.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777683.1| ferredoxin [2Fe-2S]-type protein [Herbaspiri...   206   8e-52
ref|YP_004754856.1| putative ferredoxin [Collimonas fungivorans ...   204   5e-51
ref|YP_004030349.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica...   171   4e-41
ref|ZP_02894700.1| ferredoxin-like protein [Burkholderia ambifar...   165   3e-39
ref|YP_774835.1| ferredoxin-like protein [Burkholderia ambifaria...   164   4e-39

>ref|YP_003777683.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65775.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score =  206 bits (525), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 96/106 (90%), Positives = 102/106 (96%)

Query: 7   TADKPFYEHHVFFCLNQRKPGERTCCADKGAQAAQEHAKKRIKQLGLAGEGKVRINKAGC 66
            +D+P+YEHHVFFCLNQR+PGERTCCADKGAQAAQEHAKKRIKQLGL+  GKVRINKAGC
Sbjct: 1   MSDQPYYEHHVFFCLNQRQPGERTCCADKGAQAAQEHAKKRIKQLGLSAPGKVRINKAGC 60

Query: 67  LERCEEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKIVDRLKI 112
           LERCEEGPVVVIYPQGTWYTYVD EDIDEIIDSHIVGGK+VDRLKI
Sbjct: 61  LERCEEGPVVVIYPQGTWYTYVDKEDIDEIIDSHIVGGKVVDRLKI 106


>ref|YP_004754856.1| putative ferredoxin [Collimonas fungivorans Ter331]
 gb|AEK64033.1| Putative ferredoxin [Collimonas fungivorans Ter331]
          Length = 120

 Score =  204 bits (518), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 102/112 (91%)

Query: 1   MADTPDTADKPFYEHHVFFCLNQRKPGERTCCADKGAQAAQEHAKKRIKQLGLAGEGKVR 60
           +   P  +DKPFYEHHVFFCLNQR+PGER CCA+ GAQAAQEHAK+R+KQLGLAGEGKVR
Sbjct: 9   LFQNPAMSDKPFYEHHVFFCLNQREPGERVCCANAGAQAAQEHAKRRVKQLGLAGEGKVR 68

Query: 61  INKAGCLERCEEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKIVDRLKI 112
           INKAGCLERCEEGP +VIYP+G WYTYVDNEDIDEIID HIVGGKIV+RLKI
Sbjct: 69  INKAGCLERCEEGPALVIYPEGVWYTYVDNEDIDEIIDVHIVGGKIVERLKI 120


>ref|YP_004030349.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica HKI 454]
 emb|CBW76205.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica HKI 454]
          Length = 111

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 89/101 (88%)

Query: 12  FYEHHVFFCLNQRKPGERTCCADKGAQAAQEHAKKRIKQLGLAGEGKVRINKAGCLERCE 71
           FY+HHVFFCLNQR PGER  CA+ GAQA QE+AK+RIK LGLAGEGKVRINKAGCL+RCE
Sbjct: 4   FYQHHVFFCLNQRDPGERPSCANCGAQAMQEYAKRRIKALGLAGEGKVRINKAGCLDRCE 63

Query: 72  EGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKIVDRLKI 112
            GPV+V+YP  TWYTYVD  DIDEIIDSH+VGG+IV+RL +
Sbjct: 64  LGPVLVVYPDATWYTYVDEADIDEIIDSHLVGGRIVERLLV 104


>ref|ZP_02894700.1| ferredoxin-like protein [Burkholderia ambifaria IOP40-10]
 ref|ZP_02909154.1| ferredoxin-like protein [Burkholderia ambifaria MEX-5]
 ref|YP_001809500.1| ferredoxin-like protein [Burkholderia ambifaria MC40-6]
 gb|EDS99718.1| ferredoxin-like protein [Burkholderia ambifaria IOP40-10]
 gb|EDT39729.1| ferredoxin-like protein [Burkholderia ambifaria MEX-5]
 gb|ACB65284.1| ferredoxin-like protein [Burkholderia ambifaria MC40-6]
          Length = 105

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 90/102 (88%), Gaps = 1/102 (0%)

Query: 12  FYEHHVFFCLNQRKPG-ERTCCADKGAQAAQEHAKKRIKQLGLAGEGKVRINKAGCLERC 70
           +Y+HHVFFCLNQR+PG ER  CA   AQA QE+AKKR+K+LGLAG GKVRINKAGCL+RC
Sbjct: 4   YYQHHVFFCLNQREPGAERPSCAQCNAQAMQEYAKKRVKELGLAGPGKVRINKAGCLDRC 63

Query: 71  EEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKIVDRLKI 112
           EEGPV+V+YP+GTWYTYVD  DIDEI++SH+  GK+VDRLKI
Sbjct: 64  EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGKVVDRLKI 105


>ref|YP_774835.1| ferredoxin-like protein [Burkholderia ambifaria AMMD]
 gb|ABI88501.1| ferredoxin-like protein [Burkholderia ambifaria AMMD]
          Length = 105

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 89/102 (87%), Gaps = 1/102 (0%)

Query: 12  FYEHHVFFCLNQRKPG-ERTCCADKGAQAAQEHAKKRIKQLGLAGEGKVRINKAGCLERC 70
           +Y+HHVFFCLNQR PG ER  CA   AQA QE+AKKR+K+LGLAG GKVRINKAGCL+RC
Sbjct: 4   YYQHHVFFCLNQRDPGAERPSCAQCNAQAMQEYAKKRVKELGLAGPGKVRINKAGCLDRC 63

Query: 71  EEGPVVVIYPQGTWYTYVDNEDIDEIIDSHIVGGKIVDRLKI 112
           EEGPV+V+YP+GTWYTYVD  DIDEI++SH+  GK+VDRLKI
Sbjct: 64  EEGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGKVVDRLKI 105