BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0694.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754683.1| tyrosine recombinase xerC [Collimonas fungiv... 461 e-128 ref|YP_001354893.1| site specific integrase/recombinase protein ... 460 e-127 emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenic... 444 e-123 ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas ars... 423 e-116 ref|YP_003777674.1| site-specific integrase/recombinase [Herbasp... 421 e-115 >ref|YP_004754683.1| tyrosine recombinase xerC [Collimonas fungivorans Ter331] gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331] gb|AEK63860.1| Tyrosine recombinase xerC [Collimonas fungivorans Ter331] Length = 324 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/324 (69%), Positives = 261/324 (80%), Gaps = 2/324 (0%) Query: 1 VSADANQAEIDRYLDSLLSQRMLSPHTVSNYGRDLAELSELAHAA--SAELDAVSHFQIR 58 +S DANQA + YLDSL QR LS HT+SNYGRDL EL+ L A + + A++HF IR Sbjct: 1 MSVDANQAYLSGYLDSLAGQRQLSAHTISNYGRDLKELASLTQALGDNWQFAAITHFHIR 60 Query: 59 KFAAQLHGRGLNARSIARKLSAWRGFYDWLSEQGRLKSNPVDGVKAPKKAKPLPKALAAD 118 KFAAQLH RGLN SIARKLSAWRGF++WL+EQ L SNPV+GVKAPK+ KPLPKA+AAD Sbjct: 61 KFAAQLHSRGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAAD 120 Query: 119 DAVHLVSQANPLKDPAAPAQLCNRAMFELLYSSGLRVSELVGLDVQYRQEAGYVSAGWID 178 DA+HLV+ NPL D + LCN+AMFELLYSSGLRVSEL GLD+ Y ++ + SAGWID Sbjct: 121 DAIHLVASGNPLADAGSSMALCNQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWID 180 Query: 179 MDSNEVTVTGKGNKMRSVPVGKPAMEALKAWLSARETVMGGHADAERRALFLSERGARMS 238 +D+ EVTVTGKG K RSVPVGKPA++A+ AWL R ++ ALFL+ERG R+S Sbjct: 181 LDAAEVTVTGKGGKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAAALFLTERGTRVS 240 Query: 239 PRVAQLRLKAHGQALGLATNVHPHVLRHSFASHVLQGSGDLRAVQEMLGHASIAATQVYT 298 PRV QLRLK H Q+LG+A+NVHPHVLRHSFASH+LQGSGDLRAVQE+LGHASIAATQVYT Sbjct: 241 PRVVQLRLKHHAQSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYT 300 Query: 299 SLDFQRLAQVYDAAHPRAKKIAGK 322 SLDFQRLAQVYDAAHPRAKKI K Sbjct: 301 SLDFQRLAQVYDAAHPRAKKITDK 324 >ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] Length = 319 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 229/316 (72%), Positives = 262/316 (82%), Gaps = 6/316 (1%) Query: 5 ANQAEIDRYLDSLLSQRMLSPHTVSNYGRDLAELSELAHAAS--AELDAVSHFQIRKFAA 62 +NQA +D YLD+L+SQR L+P T +Y RDL EL A A+ A L V+HFQIRKFAA Sbjct: 5 SNQAYLDGYLDNLISQRQLAPLTTVSYRRDLLELLAFATASDSKATLTGVTHFQIRKFAA 64 Query: 63 QLHGRGLNARSIARKLSAWRGFYDWLSEQGRLKSNPVDGVKAPKKAKPLPKALAADDAVH 122 QLH +GLNARSIARKLSAWRGF+ WLSEQ + SNPVDG+KAPK++KPLPKALAADDAV Sbjct: 65 QLHAQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVR 124 Query: 123 LVSQANPLKDPAAPAQLCNRAMFELLYSSGLRVSELVGLDVQYRQEAGYVSAGWIDMDSN 182 LV++ P K + QLCN AMFELLYSSGLRVSELVGLDV+Y QEA Y SAGWID D++ Sbjct: 125 LVAEHAPGKSADSAMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAH 184 Query: 183 EVTVTGKGNKMRSVPVGKPAMEALKAWLSARETVMGGHADAERRALFLSERGARMSPRVA 242 EV VTGKGNKMR+VP+G+ AM+ALKAWL+ R+T++ + LFLSERG R+S RV Sbjct: 185 EVMVTGKGNKMRTVPIGQAAMDALKAWLAVRDTLV----KLDPHPLFLSERGTRVSARVV 240 Query: 243 QLRLKAHGQALGLATNVHPHVLRHSFASHVLQGSGDLRAVQEMLGHASIAATQVYTSLDF 302 QLRLKAHGQA+GL T+VHPHVLRHSFASHVLQ SGDLRAVQEMLGHASIAATQ+YTSLDF Sbjct: 241 QLRLKAHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDF 300 Query: 303 QRLAQVYDAAHPRAKK 318 QRLAQVYDAAHPRAKK Sbjct: 301 QRLAQVYDAAHPRAKK 316 >emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 318 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/320 (70%), Positives = 263/320 (82%), Gaps = 6/320 (1%) Query: 1 VSADANQAEIDRYLDSLLSQRMLSPHTVSNYGRDLAELSELAHAA--SAELDAVSHFQIR 58 +S N A +D YLD+L+SQR LSP T+++Y RDL EL LA A+ +A L A+SHFQIR Sbjct: 1 MSLAGNHAYLDGYLDNLISQRQLSPLTITSYRRDLLELLALATASDGNAALSAISHFQIR 60 Query: 59 KFAAQLHGRGLNARSIARKLSAWRGFYDWLSEQGRLKSNPVDGVKAPKKAKPLPKALAAD 118 KFAAQLH +GLNARSIARKLSAWRGF+ WLSEQ + SNPVDG+KAPK+ KPLPKALAAD Sbjct: 61 KFAAQLHAKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAAD 120 Query: 119 DAVHLVSQANPLKDPAAPAQLCNRAMFELLYSSGLRVSELVGLDVQYRQEAGYVSAGWID 178 DAV LVS +P K+ A QLCNRAMFELLYSSGLR SELVGLD++Y QE Y SAGWID Sbjct: 121 DAVRLVSSNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWID 180 Query: 179 MDSNEVTVTGKGNKMRSVPVGKPAMEALKAWLSARETVMGGHADAERRALFLSERGARMS 238 D++E VTGKG+KMRS P+G+PA++ALKAWL+ R+T++ + LFLSERG R+S Sbjct: 181 FDAHEAMVTGKGSKMRSAPIGQPAIDALKAWLAVRDTLL----KLDPHPLFLSERGTRIS 236 Query: 239 PRVAQLRLKAHGQALGLATNVHPHVLRHSFASHVLQGSGDLRAVQEMLGHASIAATQVYT 298 RV QLRLKAH QA+GL +VHPHVLRHSFASHVLQ SGDLRAVQEMLGHASI+ATQ+YT Sbjct: 237 ARVLQLRLKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYT 296 Query: 299 SLDFQRLAQVYDAAHPRAKK 318 SLDFQRLAQVYDAAHPRAKK Sbjct: 297 SLDFQRLAQVYDAAHPRAKK 316 >ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 296 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/298 (72%), Positives = 248/298 (83%), Gaps = 6/298 (2%) Query: 23 LSPHTVSNYGRDLAELSELAHAA--SAELDAVSHFQIRKFAAQLHGRGLNARSIARKLSA 80 +SP T+++Y RDL EL LA A+ +A L A+SHFQIRKFAAQLH +GLNARSIARKLSA Sbjct: 1 MSPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAAQLHAKGLNARSIARKLSA 60 Query: 81 WRGFYDWLSEQGRLKSNPVDGVKAPKKAKPLPKALAADDAVHLVSQANPLKDPAAPAQLC 140 WRGF+ WLSEQ + SNPVDG+KAPK+ KPLPKALAADDAV LVS +P K+ A QLC Sbjct: 61 WRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNADATMQLC 120 Query: 141 NRAMFELLYSSGLRVSELVGLDVQYRQEAGYVSAGWIDMDSNEVTVTGKGNKMRSVPVGK 200 NRAMFELLYSSGLR SELVGLD++Y QE Y SAGWID D++E VTGKG+KMRS P+G+ Sbjct: 121 NRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAMVTGKGSKMRSAPIGQ 180 Query: 201 PAMEALKAWLSARETVMGGHADAERRALFLSERGARMSPRVAQLRLKAHGQALGLATNVH 260 PA++ALKAWL+ R+T++ + LFLSERG R+S RV QLRLKAH QA+GL +VH Sbjct: 181 PAIDALKAWLAVRDTLL----KLDPHPLFLSERGTRISARVLQLRLKAHAQAVGLPMDVH 236 Query: 261 PHVLRHSFASHVLQGSGDLRAVQEMLGHASIAATQVYTSLDFQRLAQVYDAAHPRAKK 318 PHVLRHSFASHVLQ SGDLRAVQEMLGHASI+ATQ+YTSLDFQRLAQVYDAAHPRAKK Sbjct: 237 PHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRAKK 294 >ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 216/324 (66%), Positives = 247/324 (76%), Gaps = 5/324 (1%) Query: 4 DANQAEIDRYLDSLLSQRMLSPHTVSNYGRDLAELSELAHAASAE-----LDAVSHFQIR 58 +A I +YL L +QR LS HTV +YGRDL EL L A E L + QIR Sbjct: 7 NATTGLIGQYLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADIDLRKTTQVQIR 66 Query: 59 KFAAQLHGRGLNARSIARKLSAWRGFYDWLSEQGRLKSNPVDGVKAPKKAKPLPKALAAD 118 K AA+LH RGLNARSIARKLSAWRGF+ WLS Q L +NPVDGVKAPKK+KPLPKALAAD Sbjct: 67 KCAARLHARGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAAD 126 Query: 119 DAVHLVSQANPLKDPAAPAQLCNRAMFELLYSSGLRVSELVGLDVQYRQEAGYVSAGWID 178 DA+ LVSQ +P++DP + CNRAMFELLYSSGLRVSELVG+DV +E GY SAGW+D Sbjct: 127 DAIRLVSQPDPVRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVD 186 Query: 179 MDSNEVTVTGKGNKMRSVPVGKPAMEALKAWLSARETVMGGHADAERRALFLSERGARMS 238 ++ EVTVTGKG K R VPVG+ A AL WL R + + ALFL+ERGAR+S Sbjct: 187 LEEAEVTVTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARIS 246 Query: 239 PRVAQLRLKAHGQALGLATNVHPHVLRHSFASHVLQGSGDLRAVQEMLGHASIAATQVYT 298 PRVAQLRLKAHG+AL +A++VHPH+LRHSFASHVLQ SGDLRAVQEMLGHASI ATQVYT Sbjct: 247 PRVAQLRLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYT 306 Query: 299 SLDFQRLAQVYDAAHPRAKKIAGK 322 +LDFQRLAQVYD AHPRA+K GK Sbjct: 307 ALDFQRLAQVYDQAHPRARKNGGK 330