BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0692.p (163 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 204 3e-51 ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 200 8e-50 ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 162 2e-38 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 115 3e-24 ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum... 108 2e-22 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 100/154 (64%), Positives = 122/154 (79%), Gaps = 1/154 (0%) Query: 10 QGSTAAKVLNLVASYQFGPARVYGNWSRVKQDLNTAANIAPTLPSTATRATTATLALARK 69 GSTA KVLN+ ASYQFGPARVYGNWSRVKQDLNT AN+ + + TLA + K Sbjct: 238 NGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLATISNRTLAASNK 297 Query: 70 ADMFELGTAYSLTPSLKLLAAVEYTTASFDTLNGKGKLTQYNLGADYWLSKRTDLYAFVS 129 AD++E+GTAYSL+PSLKLLAAV++T A FD ++GK KLTQ +LG DYWLSKRTDLYAF++ Sbjct: 298 ADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLGTDYWLSKRTDLYAFLA 357 Query: 130 NLRAKDMKNPGVAADTTGTDSSQTALTVGIRHKF 163 +A D+ NPGV AD++GTD +Q A+ VGIRHKF Sbjct: 358 YSKATDLNNPGV-ADSSGTDGNQGAVAVGIRHKF 390 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 100/155 (64%), Positives = 122/155 (78%), Gaps = 11/155 (7%) Query: 9 VQGSTAAKVLNLVASYQFGPARVYGNWSRVKQDLNTAANIAPTLPSTATRATTATLALAR 68 V G+TA K LN+VASYQFGPARVY N+SRVKQDL +A TATLA A+ Sbjct: 244 VAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVA-----------TATLANAQ 292 Query: 69 KADMFELGTAYSLTPSLKLLAAVEYTTASFDTLNGKGKLTQYNLGADYWLSKRTDLYAFV 128 KAD +E+GTAYSL+PSLKLLAAV+++ A+F+ +N KGKLTQ +LGADY+LSKRTDLYAFV Sbjct: 293 KADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVNTKGKLTQISLGADYFLSKRTDLYAFV 352 Query: 129 SNLRAKDMKNPGVAADTTGTDSSQTALTVGIRHKF 163 SN+RA D++NPGV TG+D+SQTA+ GIRHKF Sbjct: 353 SNMRASDIQNPGVTGGATGSDASQTAIITGIRHKF 387 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/154 (57%), Positives = 105/154 (68%), Gaps = 2/154 (1%) Query: 11 GSTAAKVLNLVASYQFGPARVYGNWSRVKQDLNTAANIAPTLPSTATRATTATLALARKA 70 G TA K ++ ASYQ GPAR+YGNWSR KQ L T++N A T T + KA Sbjct: 238 GDTALKTFSIGASYQAGPARLYGNWSRTKQPLATSSNSATTGILQPGSFTVGSFN-NTKA 296 Query: 71 DMFELGTAYSLTPSLKLLAAVEYTTASF-DTLNGKGKLTQYNLGADYWLSKRTDLYAFVS 129 D+FELG Y++T L LLA+V+Y +F D KGKLTQ+NLG DY+LSKRTDLYAFVS Sbjct: 297 DIFELGVNYAVTAPLHLLASVQYNKLTFADAGADKGKLTQFNLGTDYFLSKRTDLYAFVS 356 Query: 130 NLRAKDMKNPGVAADTTGTDSSQTALTVGIRHKF 163 NLRAKD NPGV D+ G +QTA+ VGIRHKF Sbjct: 357 NLRAKDAVNPGVYGDSLGDTGNQTAVAVGIRHKF 390 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/162 (44%), Positives = 90/162 (55%), Gaps = 21/162 (12%) Query: 11 GSTAAKVLNLVASYQFGPARVYGNWSRVKQDLNTAANIAPTLPSTATRATTATLAL--AR 68 G T K L ASYQ GPA++YG WS+ K+ P A A T + + A Sbjct: 221 GDTDLKTFTLGASYQAGPAKIYGAWSQTKR------------PLAAALAATGLVNITTAT 268 Query: 69 KADMFELGTAYSLTPSLKLLAAVEYTTASFDTLNG---KGKLTQYNLGADYWLSKRTDLY 125 KA++F+LG YSL+ +L LLA+V Y A KGK TQ NLG DY+LSKRTDLY Sbjct: 269 KANIFDLGVDYSLSGNLHLLASVIYDRADLSRKTAGSTKGKTTQLNLGVDYYLSKRTDLY 328 Query: 126 AFVSNLRAKDMKNPGVA----ADTTGTDSSQTALTVGIRHKF 163 A +N RA D+ NPGV + D+SQ VG+RHKF Sbjct: 329 ALYTNQRANDVNNPGVINAAYSSAPADDTSQNVFRVGLRHKF 370 >ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62512.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 96/176 (54%), Gaps = 19/176 (10%) Query: 5 GTTDVQGSTAAKVLNLVASYQFGPARVYGNWS-----------RVKQDLNTAANIAPTL- 52 G D G T K L A+YQFGPA+VYG +S +V++D N A Sbjct: 232 GEKDHAGDTCLKTWTLAAAYQFGPAKVYGAFSHVRLPLAKLHTKVRKDNNFGAMYDAKTG 291 Query: 53 ----PSTATRATTATLALARKADMFELGTAYSLTPSLKLLAAVEYTTASFDTLNGKGKLT 108 PS AT A + A + + F++G +Y L PSL L++AV++T A F G+L Sbjct: 292 TGYNPSDAT-AFSIGGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKF-VGAASGRLL 349 Query: 109 QYNLGADYWLSKRTDLYAFVSNLRAKDMKNPGVAADTT-GTDSSQTALTVGIRHKF 163 Q NLGA Y LSKRT YA V NLR+ DM N G++ D G D SQTA++ G+ H F Sbjct: 350 QLNLGAKYDLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405