BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0688.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum se... 480 e-133 ref|YP_004754678.1| diaminopimelate epimerase [Collimonas fungiv... 477 e-133 gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans... 463 e-128 sp|A4G980.2|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; ... 443 e-122 ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium... 439 e-121 >ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 230/290 (79%), Positives = 257/290 (88%), Gaps = 7/290 (2%) Query: 1 MKIKFTKMHGAGNDFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKTQSEGIDF 60 MKIKFTKMHGAGNDFVV+DAI+Q I+L+PAQW+FIADRRFGIGADQMLVVEK + EG+DF Sbjct: 1 MKIKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDF 60 Query: 61 RYRIYNADGGEVEQCGNGARARARAARAFARFVSDKGLTSKRVIRVETMSGIIEPTLEDD 120 RYRIYNADGGEVEQCGNGARA F +FV+DKGLTSKR IRVETMSG+IEP LEDD Sbjct: 61 RYRIYNADGGEVEQCGNGARA-------FVKFVTDKGLTSKRAIRVETMSGVIEPRLEDD 113 Query: 121 GRVTVDMGAPVLSPEQVPFDPSGLDSKAEGDDALWPLDVDGKTRWISVVSMGNPHAVQIV 180 G++TVDMGAP+L+P VPFD GL + E +D LWPLDV GKT WISVVSMGNPHAVQ+V Sbjct: 114 GQITVDMGAPILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVV 173 Query: 181 ADTEAAPVLTDGPLIERHVRFPKRVNAGFMQVVDRHNVNLRVFERGVGETLACGTGACAA 240 D+EAAPVL++GPLIERH RFPKRVNAGFMQVVDRH+VNLRV+ERG GETLACGTGACAA Sbjct: 174 EDSEAAPVLSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAA 233 Query: 241 VVAGIRRGLLDTPVAVQTHGGELVIRWTGPDKPVMMTGPAVSVFEGEIDI 290 VVAGIRRGLLD+PVAVQTHGG L I W GP + VMMTGPAVSV+EGEI++ Sbjct: 234 VVAGIRRGLLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIEL 283 >ref|YP_004754678.1| diaminopimelate epimerase [Collimonas fungivorans Ter331] gb|AEK63855.1| Diaminopimelate epimerase [Collimonas fungivorans Ter331] Length = 287 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/290 (78%), Positives = 253/290 (87%), Gaps = 7/290 (2%) Query: 1 MKIKFTKMHGAGNDFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKTQSEGIDF 60 MK+KFTKMHGAGNDFVV+DAIHQ + TPAQW+ + DRRFG+GADQMLVVEK+Q+EG+DF Sbjct: 1 MKLKFTKMHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDF 60 Query: 61 RYRIYNADGGEVEQCGNGARARARAARAFARFVSDKGLTSKRVIRVETMSGIIEPTLEDD 120 RYRIYNADGGEVEQCGNGARA F +FV+DKGLTSKR IRVETMSGIIEP LEDD Sbjct: 61 RYRIYNADGGEVEQCGNGARA-------FVKFVTDKGLTSKRAIRVETMSGIIEPKLEDD 113 Query: 121 GRVTVDMGAPVLSPEQVPFDPSGLDSKAEGDDALWPLDVDGKTRWISVVSMGNPHAVQIV 180 GR+TV MGAPVL+P VPFD S LDS+A G+D LWPLDV GK WISVVSMGNPHAVQ+V Sbjct: 114 GRITVAMGAPVLAPAAVPFDASNLDSRAMGEDTLWPLDVQGKQVWISVVSMGNPHAVQVV 173 Query: 181 ADTEAAPVLTDGPLIERHVRFPKRVNAGFMQVVDRHNVNLRVFERGVGETLACGTGACAA 240 D+EAAPVL +GPLIE H RFP+RVNAGFMQ+VDRH++ LRVFERG GETLACGTGACAA Sbjct: 174 EDSEAAPVLAEGPLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAA 233 Query: 241 VVAGIRRGLLDTPVAVQTHGGELVIRWTGPDKPVMMTGPAVSVFEGEIDI 290 VVAGIRRGLLD+PVAVQTHGGEL I W G + VMMTGPAVSVFEGEI+I Sbjct: 234 VVAGIRRGLLDSPVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEI 283 >gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331] Length = 280 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/283 (78%), Positives = 246/283 (86%), Gaps = 7/283 (2%) Query: 8 MHGAGNDFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKTQSEGIDFRYRIYNA 67 MHGAGNDFVV+DAIHQ + TPAQW+ + DRRFG+GADQMLVVEK+Q+EG+DFRYRIYNA Sbjct: 1 MHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60 Query: 68 DGGEVEQCGNGARARARAARAFARFVSDKGLTSKRVIRVETMSGIIEPTLEDDGRVTVDM 127 DGGEVEQCGNGARA F +FV+DKGLTSKR IRVETMSGIIEP LEDDGR+TV M Sbjct: 61 DGGEVEQCGNGARA-------FVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAM 113 Query: 128 GAPVLSPEQVPFDPSGLDSKAEGDDALWPLDVDGKTRWISVVSMGNPHAVQIVADTEAAP 187 GAPVL+P VPFD S LDS+A G+D LWPLDV GK WISVVSMGNPHAVQ+V D+EAAP Sbjct: 114 GAPVLAPAAVPFDASNLDSRAMGEDTLWPLDVQGKQVWISVVSMGNPHAVQVVEDSEAAP 173 Query: 188 VLTDGPLIERHVRFPKRVNAGFMQVVDRHNVNLRVFERGVGETLACGTGACAAVVAGIRR 247 VL +GPLIE H RFP+RVNAGFMQ+VDRH++ LRVFERG GETLACGTGACAAVVAGIRR Sbjct: 174 VLAEGPLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIRR 233 Query: 248 GLLDTPVAVQTHGGELVIRWTGPDKPVMMTGPAVSVFEGEIDI 290 GLLD+PVAVQTHGGEL I W G + VMMTGPAVSVFEGEI+I Sbjct: 234 GLLDSPVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEI 276 >sp|A4G980.2|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas arsenicoxydans] Length = 283 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/290 (72%), Positives = 244/290 (84%), Gaps = 7/290 (2%) Query: 1 MKIKFTKMHGAGNDFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKTQSEGIDF 60 MKIKFTKMHGAGNDFVV+DAI+Q I TPAQW+ +ADRRFG+GADQMLVVEK Q+ G+DF Sbjct: 1 MKIKFTKMHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDF 60 Query: 61 RYRIYNADGGEVEQCGNGARARARAARAFARFVSDKGLTSKRVIRVETMSGIIEPTLEDD 120 RYRIYNADGGEVEQCGNGARA F +FV+DK LT K+ IRVETMSG+IEP LE + Sbjct: 61 RYRIYNADGGEVEQCGNGARA-------FVKFVTDKKLTDKQAIRVETMSGVIEPRLEAN 113 Query: 121 GRVTVDMGAPVLSPEQVPFDPSGLDSKAEGDDALWPLDVDGKTRWISVVSMGNPHAVQIV 180 G++TVDMGAP+L+PE VPFD SGL KAEG D LWPLD+ G+T WISV+SMGNPHAVQ+V Sbjct: 114 GQITVDMGAPILTPEDVPFDVSGLLCKAEGADTLWPLDIKGETHWISVLSMGNPHAVQVV 173 Query: 181 ADTEAAPVLTDGPLIERHVRFPKRVNAGFMQVVDRHNVNLRVFERGVGETLACGTGACAA 240 AD + APV DG LIE H RFPKRVNAGFMQ++D H + LRVFERG GETLACGTGACAA Sbjct: 174 ADADHAPVREDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAA 233 Query: 241 VVAGIRRGLLDTPVAVQTHGGELVIRWTGPDKPVMMTGPAVSVFEGEIDI 290 VV+GIRRGLL +P+ VQT GGEL I W G + PV++TGPAV+VFEGEI++ Sbjct: 234 VVSGIRRGLLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283 >ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] Length = 276 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/283 (75%), Positives = 240/283 (84%), Gaps = 7/283 (2%) Query: 8 MHGAGNDFVVVDAIHQDIALTPAQWKFIADRRFGIGADQMLVVEKTQSEGIDFRYRIYNA 67 MHGAGNDFVV+DAI+Q I TPAQW+++ADRRFG+GADQMLVVEK Q+ G+DFRYRIYNA Sbjct: 1 MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60 Query: 68 DGGEVEQCGNGARARARAARAFARFVSDKGLTSKRVIRVETMSGIIEPTLEDDGRVTVDM 127 DGGEVEQCGNGARA F RFV+DK LT KR I+VETMSGIIEP LE +G++TVDM Sbjct: 61 DGGEVEQCGNGARA-------FVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDM 113 Query: 128 GAPVLSPEQVPFDPSGLDSKAEGDDALWPLDVDGKTRWISVVSMGNPHAVQIVADTEAAP 187 GAP+L+PE VPFD L KAEG+D LWPLD+ G+T WISVVSMGNPHAVQ+VAD E AP Sbjct: 114 GAPILNPEDVPFDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVVADVEEAP 173 Query: 188 VLTDGPLIERHVRFPKRVNAGFMQVVDRHNVNLRVFERGVGETLACGTGACAAVVAGIRR 247 V DG LIE H RFPKRVNAGFMQ++D+H++ LRVFERG GETLACGTGACAAVVAGIRR Sbjct: 174 VREDGVLIEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRR 233 Query: 248 GLLDTPVAVQTHGGELVIRWTGPDKPVMMTGPAVSVFEGEIDI 290 GLL +PV VQT GGELVI W G D PVMMTGPAV+VFEGEI+I Sbjct: 234 GLLVSPVKVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276