BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0678.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777661.1| NADH-ubiquinone oxidoreductase [Herbaspirill... 403 e-110 ref|ZP_08273859.1| NAD-dependent epimerase/dehydratase [Oxalobac... 387 e-106 ref|ZP_06686059.1| NAD-dependent epimerase/dehydratase [Achromob... 316 4e-84 emb|CAZ89527.1| putative NADH UBIQUINONE OXIDOREDUCTASE 1 ALPHA ... 315 6e-84 ref|YP_003644192.1| NAD-dependent epimerase/dehydratase [Thiomon... 315 8e-84 >ref|YP_003777661.1| NADH-ubiquinone oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ65753.1| NADH-ubiquinone oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/322 (62%), Positives = 241/322 (74%) Query: 4 MAYRNILIIGGSGFIGSQLVAQLARSTAAGITVPTRRYERSKHLLVMPTVRTTIADVHDE 63 MA++ IL+IGGSGFIG++LV L ST + VPTRRYER+KHLLV P V A++HD+ Sbjct: 1 MAFKKILVIGGSGFIGTRLVELLGSSTDYRVMVPTRRYERAKHLLVSPVVTVVQANIHDD 60 Query: 64 AVLDRLVPQADVVINLVGTLHSRSGPRGSAWGPDFERAHVELPRKIVAACARHGVRRYLH 123 A L RLV +ADVVINLVG L SR G+A+GPDFER HV LPR+IVAAC + GV+RYLH Sbjct: 61 AALARLVAEADVVINLVGILQSRPARGGAAYGPDFERQHVLLPRRIVAACVQQGVKRYLH 120 Query: 124 MSALGASAQAPSMYLRSKAAGEVAAFSDATVAATVFRPSVVFGEHDNFLNLFAALQKRFP 183 MSAL A A+ PSMYLRSKAAGE A S ++ +FRPSVVFGE DNFLN+FA L + FP Sbjct: 121 MSALCADAKGPSMYLRSKAAGEQEALSAPSLDVAIFRPSVVFGEGDNFLNMFAGLNRMFP 180 Query: 184 VMPLGGAEARFQPVYVGDVAQAFVSALQNESTQGRSYELAGPQVYTLRQLVQLAGACSGH 243 V+PLG +ARFQPVYVGDVAQAFV+AL G+ +EL GP+ YTLR+LV+L+G SGH Sbjct: 181 VIPLGSPDARFQPVYVGDVAQAFVNALALPRLGGKVFELGGPKQYTLRELVRLSGWYSGH 240 Query: 244 PRPVFGLPPALASLQAFLLEHLPGRMMSRDNLASMQVDNVASGPMAPELDIAPTALEAIA 303 PRP+ GLP AL LQAF LEHLPG++MSRDN+ASMQVDNV P+A EL + P ++E + Sbjct: 241 PRPIVGLPDALGWLQAFALEHLPGKLMSRDNVASMQVDNVLHAPLAAELRLTPKSVEEVV 300 Query: 304 PRYLAGVHMQQQMDAHRRGARR 325 P YL QQQ D R ARR Sbjct: 301 PGYLCPRSPQQQFDLFRSTARR 322 >ref|ZP_08273859.1| NAD-dependent epimerase/dehydratase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32663.1| NAD-dependent epimerase/dehydratase [Oxalobacteraceae bacterium IMCC9480] Length = 325 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/324 (62%), Positives = 241/324 (74%), Gaps = 3/324 (0%) Query: 4 MAYRNILIIGGSGFIGSQLVAQLARSTAAGITVPTRRYERSKHLLVMPTVRTTIADVHDE 63 M + N+L++GG+GF+GS LVAQL + + VPTRR R++HL V+PTV D+H E Sbjct: 3 MHHSNVLVLGGTGFVGSHLVAQLV-AQGRHVIVPTRRAIRARHLAVLPTVEIVETDIHQE 61 Query: 64 AVLDRLVPQADVVINLVGTLHSRSGPRGSA-WGPDFERAHVELPRKIVAACARHGVRRYL 122 L RL+ + D VINLVG LHSR G+A +GPDF RAHVELP +IVAAC GV+R+L Sbjct: 62 QALARLMGRTDAVINLVGVLHSRPVNGGAASYGPDFARAHVELPIRIVAACGVAGVKRFL 121 Query: 123 HMSALGASAQAPSMYLRSKAAGEVAAFSDATVAATVFRPSVVFGEHDNFLNLFAALQKRF 182 HMSALGA APSMYLRSKAAGE AA S VA TVFRPSVVFGE D FLN+FA +Q+ F Sbjct: 122 HMSALGADRNAPSMYLRSKAAGEDAARSHPAVATTVFRPSVVFGEDDAFLNMFAGMQRWF 181 Query: 183 PVMPLGGAEARFQPVYVGDVAQAFVSALQNESTQGRSYELAGPQVYTLRQLVQLAGACSG 242 PV+PLGGA+ARFQP+YV DVAQAFV+AL N+ T G+ YEL GP+V+TLR+LVQLAG SG Sbjct: 182 PVIPLGGADARFQPIYVEDVAQAFVNALDNQHTVGKVYELGGPEVFTLRELVQLAGRASG 241 Query: 243 HPRPVFGLPPALASLQAFLLEHLPGR-MMSRDNLASMQVDNVASGPMAPELDIAPTALEA 301 HPRPV GLPPALA LQA +LE PG +MSRDNL SM+ DNV GP+APEL + P ALEA Sbjct: 242 HPRPVIGLPPALARLQALVLEFAPGGPVMSRDNLDSMKTDNVMRGPIAPELGVTPQALEA 301 Query: 302 IAPRYLAGVHMQQQMDAHRRGARR 325 IA RYL + D +R A+R Sbjct: 302 IAARYLGEAGARSHFDQYRVRAKR 325 >ref|ZP_06686059.1| NAD-dependent epimerase/dehydratase [Achromobacter piechaudii ATCC 43553] gb|EFF77134.1| NAD-dependent epimerase/dehydratase [Achromobacter piechaudii ATCC 43553] Length = 306 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 165/304 (54%), Positives = 203/304 (66%), Gaps = 9/304 (2%) Query: 9 ILIIGGSGFIGSQLVAQLARSTAAGITVPTRRYERSKHLLVMPTVRTTIADVHDEAVLDR 68 IL+IGG+GFIG L+A+L+ I VPTR R L V+PT D+HD+AVLDR Sbjct: 3 ILVIGGTGFIGRHLIARLSGDLHQ-IIVPTRLLARGSELQVLPTTTLIQTDIHDDAVLDR 61 Query: 69 LVPQADVVINLVGTLHSRSGPRGSAWGPDFERAHVELPRKIVAACARHGVRRYLHMSALG 128 LV D V+NLVG LH G G +G F RAHV LP++I AC RHGVRR LH+SALG Sbjct: 62 LVSGCDAVVNLVGILH---GNVGKPYGSAFARAHVHLPQRIARACQRHGVRRLLHISALG 118 Query: 129 ASAQAPSMYLRSKAAGEVAAF----SDATVAATVFRPSVVFGEHDNFLNLFAALQKRFPV 184 A +Q SMY RSK GE A SD T+FRPSV+FG DNF N+FA+L + PV Sbjct: 119 ADSQGDSMYQRSKGDGEAAIKAEFPSDNDSGWTIFRPSVIFGPDDNFTNMFASLARWLPV 178 Query: 185 MPLGGAEARFQPVYVGDVAQAFVSALQNESTQGRSYELAGPQVYTLRQLVQLAGACSGHP 244 +PL GA AR QPVYVGDV A +AL + T G++YEL GPQVYTL ++ +L A SGHP Sbjct: 179 LPLAGAHARMQPVYVGDVVAAMATALADNHTCGKTYELGGPQVYTLGEIARLCAAWSGHP 238 Query: 245 RPVFGLPPALASLQAFLLEHLPGR-MMSRDNLASMQVDNVASGPMAPELDIAPTALEAIA 303 RPV +P + +QA L E +PG +MSRDNL S++ DN+ GP+APEL + PT LEA+A Sbjct: 239 RPVVPVPMGVGRIQARLFECMPGEPLMSRDNLDSLRRDNICVGPIAPELRVVPTGLEAVA 298 Query: 304 PRYL 307 PRYL Sbjct: 299 PRYL 302 >emb|CAZ89527.1| putative NADH UBIQUINONE OXIDOREDUCTASE 1 ALPHA SUBUNIT [Thiomonas sp. 3As] Length = 330 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 178/334 (53%), Positives = 223/334 (66%), Gaps = 16/334 (4%) Query: 4 MAYRNILIIGGSGFIGSQLVAQLARSTAAGITVPTRRYERSKHLLVMPTVRTTIADVHDE 63 M +NIL+IGGSGFIGS+LV L+ + +TVPTRR +R++HL+ +P V DVHD+ Sbjct: 1 MQQQNILVIGGSGFIGSRLVNALSLANHF-VTVPTRRRQRARHLVQLPLVDVVEIDVHDD 59 Query: 64 AVLDRLVPQADVVINLVGTLHSRSGPRGSAWGPDFERAHVELPRKIVAACARHGVRRYLH 123 A L +LV D V+NLVG L R RG +G DF RAHV+LPR+I AACA+ GVRR +H Sbjct: 60 AKLAKLVAGRDAVVNLVGILQGR---RGQPYGADFARAHVDLPRRIAAACAQQGVRRVVH 116 Query: 124 MSALGASAQAPSMYLRSKAAGEVAAFSDATVAATVFRPSVVFGEHDNFLNLFAALQKRFP 183 MSALGA ++ PSMYLRSK GE A + A + T+FRPSVVFG DNFLN FA LQ+ FP Sbjct: 117 MSALGADSKGPSMYLRSKGDGEAALKAQAGIDLTIFRPSVVFGPEDNFLNTFAKLQRVFP 176 Query: 184 VMPLGGAEARFQPVYVGDVAQAFVSAL---QNESTQGRSYELAGPQVYTLRQLVQLAGAC 240 V+PL GA+ RF PVYVGDV AF S+L Q T G++YEL GP YTL +LV+L+G Sbjct: 177 VVPLAGAKTRFAPVYVGDVVTAFASSLVGPQARETLGQTYELCGPGTYTLAELVRLSGQW 236 Query: 241 S----GHPRPVFGLPPALASLQAFLLEHLPGR-MMSRDNLASMQVDNVASGPM---APEL 292 + G R + LP AL LQA ++E PG +MSRDNL SM+VD+V SG M APEL Sbjct: 237 ARVGGGRGRSIIPLPDALGRLQALMMELAPGEPVMSRDNLDSMKVDSVCSGAMPGFAPEL 296 Query: 293 DIA-PTALEAIAPRYLAGVHMQQQMDAHRRGARR 325 + P +LEAIAP YL + + + R A R Sbjct: 297 GVPHPESLEAIAPTYLDPKYQESEYGPMRATAGR 330 >ref|YP_003644192.1| NAD-dependent epimerase/dehydratase [Thiomonas intermedia K12] gb|ADG31862.1| NAD-dependent epimerase/dehydratase [Thiomonas intermedia K12] Length = 330 Score = 315 bits (806), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 177/334 (52%), Positives = 223/334 (66%), Gaps = 16/334 (4%) Query: 4 MAYRNILIIGGSGFIGSQLVAQLARSTAAGITVPTRRYERSKHLLVMPTVRTTIADVHDE 63 M +NIL+IGGSGFIGS+LV L+ + +TVPTRR +R++HL+ +P V DVHD+ Sbjct: 1 MQQQNILVIGGSGFIGSRLVNALSLANHF-VTVPTRRRQRARHLVQLPLVDVVETDVHDD 59 Query: 64 AVLDRLVPQADVVINLVGTLHSRSGPRGSAWGPDFERAHVELPRKIVAACARHGVRRYLH 123 A L +LV D V+NLVG L R RG +G DF RAHV+LPR+I AACA+ GVRR +H Sbjct: 60 AKLAKLVAGRDAVVNLVGILQGR---RGQPYGADFARAHVDLPRRIAAACAQQGVRRVVH 116 Query: 124 MSALGASAQAPSMYLRSKAAGEVAAFSDATVAATVFRPSVVFGEHDNFLNLFAALQKRFP 183 MSALGA + PSMYLRSK GE A + A + T+FRPSVVFG DNFLN FA LQ+ FP Sbjct: 117 MSALGADSNGPSMYLRSKGDGEAALKAQAGIDLTIFRPSVVFGPEDNFLNTFAKLQRVFP 176 Query: 184 VMPLGGAEARFQPVYVGDVAQAFVSAL---QNESTQGRSYELAGPQVYTLRQLVQLAGAC 240 V+PL GA+ RF PVYVGDV AF S+L Q T G++YEL GP YTL +LV+L+G Sbjct: 177 VVPLAGAKTRFAPVYVGDVVTAFASSLVGPQARETLGQTYELCGPGTYTLAELVRLSGQW 236 Query: 241 S----GHPRPVFGLPPALASLQAFLLEHLPGR-MMSRDNLASMQVDNVASGPM---APEL 292 + G R + LP AL LQA ++E PG +MSRDNL SM+VD+V SG + APEL Sbjct: 237 ARVGGGRGRSIIPLPDALGRLQALMMELAPGEPVMSRDNLDSMKVDSVCSGALPGFAPEL 296 Query: 293 DIA-PTALEAIAPRYLAGVHMQQQMDAHRRGARR 325 + P +LEAIAP YL + + + + R A R Sbjct: 297 GVPHPESLEAIAPTYLDPKYQESEYGSMRATAGR 330