BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0676.p (409 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777659.1| tRNA nucleotidyltransferase [Herbaspirillum ... 633 e-179 ref|YP_004754667.1| tRNA nucleotidyltransferase [Collimonas fung... 629 e-178 ref|YP_001101177.1| tRNA nucleotidyl transferase [Herminiimonas ... 609 e-172 ref|YP_001354880.1| tRNA nucleotidyltransferase [Janthinobacteri... 586 e-165 ref|YP_002229719.1| multifunctional tRNA nucleotidyl transferase... 553 e-155 >ref|YP_003777659.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ65751.1| tRNA nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 307/405 (75%), Positives = 343/405 (84%), Gaps = 1/405 (0%) Query: 3 IXIYVVGGAVRDELLGLPVQDHDYVVVGATPEDMLARGFRPVGKDFPVFLHPDTQEEYAL 62 + Y VGGAVRD LLGLPV+D D+VVVGATPE +LA GFRPVGKDFPVFLHP TQEEYAL Sbjct: 1 MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPHTQEEYAL 60 Query: 63 ARTERKTAPGYKGFVFHTDSAVTLEQDLARRDLTINAIAKGEDGVLVDPYHGQEDIRRRV 122 ARTERKTAPGYKGF FH VTLE DLARRDLTINAIA+ EDG LVDPYHG+ DI RV Sbjct: 61 ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADIAARV 120 Query: 123 FRHVSDAFIEDPVRILRLARFAARFPGFTVAPETNALMQKMVAAGEVDALVPERVWQELA 182 FRHVSDAFIEDPVRILR+ARFAARF FTVAPETNALMQ+MV GEVDALVPERVWQEL+ Sbjct: 121 FRHVSDAFIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDALVPERVWQELS 180 Query: 183 RGMMEQMPSRMFNVLRDCGALARILPELDALWGVPQPAKYHPEIDTGVHVMMVLDYAAGR 242 RG+MEQ PSRMF VLR CGAL RILPELDALWGVPQP K+HPEIDTGVHVM+V+D+AA + Sbjct: 181 RGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 240 Query: 243 GYSLGVRFAALMHDLGKGTTPPDLWPSHHGHEGRSVELVQGICDRLKVPNDCRDLAVITA 302 G++L +RFAALMHDLGKGTTPP++WP HHGHE RS L + +C RLKVP +CRDLA++TA Sbjct: 241 GFTLPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALMTA 300 Query: 303 REHGNVGRAFELRPATIVNLLARCDGFRKPERFHDMLQASECDRRGRTGFEDVAFPQLEY 362 REHGNVGRAFE+RP T+V +RCD FRKP+RF DML+A+ECD RGRTG E FPQ Y Sbjct: 301 REHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQAAY 360 Query: 363 LMGALKAAQGVDAGAIAAKHREQPQRIPEAILAARTAAVAEYAAN 407 L GAL+AAQ +DAGAI A+ + QPQRIPEAI AART VA + A Sbjct: 361 LEGALQAAQQIDAGAI-AQAQSQPQRIPEAIQAARTEQVAAFVAQ 404 >ref|YP_004754667.1| tRNA nucleotidyltransferase [Collimonas fungivorans Ter331] gb|AAT42393.1| tRNA nucleotidyltransferase polyA polymerase [Collimonas fungivorans Ter331] gb|AEK63844.1| tRNA nucleotidyltransferase [Collimonas fungivorans Ter331] Length = 408 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 306/401 (76%), Positives = 340/401 (84%) Query: 3 IXIYVVGGAVRDELLGLPVQDHDYVVVGATPEDMLARGFRPVGKDFPVFLHPDTQEEYAL 62 + ++ VGGAVRDELLGLPV+D DYVVVGATP+DMLA+GFRPVGKDFPVFLHPDT EEYAL Sbjct: 1 MKVFAVGGAVRDELLGLPVKDRDYVVVGATPDDMLAQGFRPVGKDFPVFLHPDTHEEYAL 60 Query: 63 ARTERKTAPGYKGFVFHTDSAVTLEQDLARRDLTINAIAKGEDGVLVDPYHGQEDIRRRV 122 ARTERKTAPGYKGFVFHTD VTLEQDL RRDLTINAIA+ DG + DP++G+ D++ RV Sbjct: 61 ARTERKTAPGYKGFVFHTDPDVTLEQDLVRRDLTINAIARAGDGTVADPFNGRRDLQDRV 120 Query: 123 FRHVSDAFIEDPVRILRLARFAARFPGFTVAPETNALMQKMVAAGEVDALVPERVWQELA 182 FRHVSDAF EDPVRILR+ARFAARF FTVAPETNALMQ+MVAAGEVDALVPERVWQELA Sbjct: 121 FRHVSDAFAEDPVRILRVARFAARFTDFTVAPETNALMQRMVAAGEVDALVPERVWQELA 180 Query: 183 RGMMEQMPSRMFNVLRDCGALARILPELDALWGVPQPAKYHPEIDTGVHVMMVLDYAAGR 242 RG+ME PSRMF VLR CGALARILPELD LWG+PQP KYHPEIDTGVHVMMV+D AA Sbjct: 181 RGLMESRPSRMFEVLRACGALARILPELDVLWGIPQPEKYHPEIDTGVHVMMVVDTAAAE 240 Query: 243 GYSLGVRFAALMHDLGKGTTPPDLWPSHHGHEGRSVELVQGICDRLKVPNDCRDLAVITA 302 ++L VRFAAL+HDLGKG TP WPSHHGHEG VELV+ +C RLKVP + RDLA++TA Sbjct: 241 NHALPVRFAALVHDLGKGATPAAGWPSHHGHEGLGVELVERVCQRLKVPGEARDLALMTA 300 Query: 303 REHGNVGRAFELRPATIVNLLARCDGFRKPERFHDMLQASECDRRGRTGFEDVAFPQLEY 362 REHGNVGRAFELR TIVNLL RCD FRKP+RF DML+A+ECD RGR G+ FPQL Y Sbjct: 301 REHGNVGRAFELRANTIVNLLGRCDAFRKPQRFVDMLRATECDYRGRAGYAGKPFPQLAY 360 Query: 363 LMGALKAAQGVDAGAIAAKHREQPQRIPEAILAARTAAVAE 403 L ALKAAQ V+AG IA ++QPQRIPEAI AAR V + Sbjct: 361 LQAALKAAQSVNAGVIAGMFQQQPQRIPEAIHAARVEMVEQ 401 >ref|YP_001101177.1| tRNA nucleotidyl transferase [Herminiimonas arsenicoxydans] sp|A4G969.1|CCA_HERAR RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase emb|CAL63056.1| Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2', 3'-cyclic phosphodiesterase; Phosphatase] [Herminiimonas arsenicoxydans] Length = 414 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 293/404 (72%), Positives = 336/404 (83%), Gaps = 4/404 (0%) Query: 3 IXIYVVGGAVRDELLGLPVQDHDYVVVGATPEDMLARGFRPVGKDFPVFLHPDTQEEYAL 62 + IY+VGGAVRDELLG+ V+D DYVVVGATPE M+A+ + PVGKDFPVFLHP T EEYAL Sbjct: 1 MKIYIVGGAVRDELLGVAVKDRDYVVVGATPEQMIAQNYTPVGKDFPVFLHPVTHEEYAL 60 Query: 63 ARTERKTAPGYKGFVFHTDSAVTLEQDLARRDLTINAIAKGEDGVLVDPYHGQEDIRRRV 122 ARTERKTAPGYKGFVFHTD+ VTLE+DL RRDLT+NA+AK DG ++DP+ G+ D+ +++ Sbjct: 61 ARTERKTAPGYKGFVFHTDAGVTLEEDLIRRDLTVNAMAKDADGRIIDPFGGRRDLEQKI 120 Query: 123 FRHVSDAFIEDPVRILRLARFAARFPGFTVAPETNALMQKMVAAGEVDALVPERVWQELA 182 FRHVS AF EDPVRILR+ARFAARFP F+VA ETNALMQ MVAAGEVDALVPER WQELA Sbjct: 121 FRHVSSAFAEDPVRILRVARFAARFPQFSVAAETNALMQAMVAAGEVDALVPERTWQELA 180 Query: 183 RGMMEQMPSRMFNVLRDCGALARILPELDALWGVPQPAKYHPEIDTGVHVMMVLDYAAGR 242 RG+ME PSRMF VLRDCGAL R+LPELDALWGVPQP KYHPEIDTGVHVMMV+D+AA + Sbjct: 181 RGLMEVQPSRMFAVLRDCGALQRMLPELDALWGVPQPEKYHPEIDTGVHVMMVVDHAAQQ 240 Query: 243 GYSLGVRFAALMHDLGKGTTPPDLWPSHHGHEGRSVELVQGICDRLKVPNDCRDLAVITA 302 +L +R AAL HDLGKG TPP++WP HHGHE +S +LV+ +C RLK+PNDCRDL+V+TA Sbjct: 241 NLALPIRCAALFHDLGKGVTPPEMWPRHHGHEMQSAKLVETVCQRLKIPNDCRDLSVMTA 300 Query: 303 REHGNVGRAFELRPATIVNLLARCDGFRKPERFHDMLQASECDRRGRTGFEDVAFPQLEY 362 REHGN+GRA ELR ATIV L RCD FRKP+RF DMLQASECD RGRTGF DV FPQ Y Sbjct: 301 REHGNIGRALELRAATIVTLFERCDAFRKPQRFIDMLQASECDHRGRTGFADVPFPQNAY 360 Query: 363 LMGALKAAQGVDAGAIAAKHRE----QPQRIPEAILAARTAAVA 402 + AL AAQ V+ G IAA ++ QP RIPEAI AR AVA Sbjct: 361 MQKALAAAQTVNGGEIAALMQQRWPDQPARIPEAIHEARVKAVA 404 >ref|YP_001354880.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille] sp|A6T2Y3.1|CCA_JANMA RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase gb|ABR88984.1| tRNA nucleotidyltransferase [Janthinobacterium sp. Marseille] Length = 416 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 297/404 (73%), Positives = 330/404 (81%), Gaps = 4/404 (0%) Query: 3 IXIYVVGGAVRDELLGLPVQDHDYVVVGATPEDMLARGFRPVGKDFPVFLHPDTQEEYAL 62 + Y+VGGAVRDELLG+ V+D DYVVVGATPE M+A+G+ PVGKDFPVFLHP T EYAL Sbjct: 1 MKTYIVGGAVRDELLGVAVKDRDYVVVGATPEAMVAQGYTPVGKDFPVFLHPKTHAEYAL 60 Query: 63 ARTERKTAPGYKGFVFHTDSAVTLEQDLARRDLTINAIAKGEDGVLVDPYHGQEDIRRRV 122 ARTERKTAPGYKGFVFHTD++VTLE+DL RRDLTINA+A+ EDG +VDP+ G+ D+ R+ Sbjct: 61 ARTERKTAPGYKGFVFHTDASVTLEEDLIRRDLTINAMAQDEDGSIVDPFGGKRDLELRI 120 Query: 123 FRHVSDAFIEDPVRILRLARFAARFPGFTVAPETNALMQKMVAAGEVDALVPERVWQELA 182 FRHVS AF EDPVRILR+ARFAARFP FTVA ETN LMQ MV AGEVDALVPERVWQELA Sbjct: 121 FRHVSPAFAEDPVRILRIARFAARFPEFTVAAETNTLMQDMVTAGEVDALVPERVWQELA 180 Query: 183 RGMMEQMPSRMFNVLRDCGALARILPELDALWGVPQPAKYHPEIDTGVHVMMVLDYAAGR 242 RG+ME PSRMF VLRDCGAL RILPELD LWGVPQPA+YHPEIDTGVH+M+V+DYAAG Sbjct: 181 RGLMEVRPSRMFEVLRDCGALQRILPELDVLWGVPQPAQYHPEIDTGVHIMLVIDYAAGI 240 Query: 243 GYSLGVRFAALMHDLGKGTTPPDLWPSHHGHEGRSVELVQGICDRLKVPNDCRDLAVITA 302 L VR AAL+HDLGKG T PD WP HHGHE SV+LV + RLK+PNDCRDLA++TA Sbjct: 241 KADLPVRCAALLHDLGKGVTLPDQWPRHHGHEMHSVKLVDTVSKRLKIPNDCRDLALMTA 300 Query: 303 REHGNVGRAFELRPATIVNLLARCDGFRKPERFHDMLQASECDRRGRTGFEDVAFPQLEY 362 REHGNVGRA ELR TIVNLL RCD FRKP+RF +MLQASECD RGRTGF D FPQ Y Sbjct: 301 REHGNVGRALELRANTIVNLLERCDAFRKPQRFIEMLQASECDHRGRTGFADKPFPQKAY 360 Query: 363 LMGALKAAQGVDAGAIAAKHRE----QPQRIPEAILAARTAAVA 402 L AL AAQ V+ G IA R+ Q QRIPEAI AR AVA Sbjct: 361 LQAALAAAQTVNGGEIAELTRQRYPDQAQRIPEAIHEARVQAVA 404 >ref|YP_002229719.1| multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase [Burkholderia cenocepacia J2315] sp|B4E8K1.1|CCA_BURCJ RecName: Full=Multifunctional CCA protein; Includes: RecName: Full=CCA-adding enzyme; AltName: Full=CCA tRNA nucleotidyltransferase; AltName: Full=tRNA CCA-pyrophosphorylase; AltName: Full=tRNA adenylyl-/cytidylyl-transferase; AltName: Full=tRNA nucleotidyltransferase; AltName: Full=tRNA-NT; Includes: RecName: Full=2'-nucleotidase; Includes: RecName: Full=2',3'-cyclic phosphodiesterase; Includes: RecName: Full=Phosphatase emb|CAR50868.1| tRNA nucleotidyltransferase [Burkholderia cenocepacia J2315] Length = 413 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 281/410 (68%), Positives = 323/410 (78%), Gaps = 6/410 (1%) Query: 3 IXIYVVGGAVRDELLGLPVQDHDYVVVGATPEDMLARGFRPVGKDFPVFLHPDTQEEYAL 62 + IY VGGA+RDELLG+PVQD DYVVVGATPE M A+GFRPVGKDFPVFLHP TQEEYAL Sbjct: 1 MNIYAVGGAIRDELLGVPVQDRDYVVVGATPEQMTAQGFRPVGKDFPVFLHPQTQEEYAL 60 Query: 63 ARTERKTAPGYKGFVFHTDSAVTLEQDLARRDLTINAIAK--GEDGVLV----DPYHGQE 116 ARTERKTA GY GF FH VTL++DLARRDLTINA+A+ +G LV DP+ GQ Sbjct: 61 ARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPEGTLVGPVIDPFDGQA 120 Query: 117 DIRRRVFRHVSDAFIEDPVRILRLARFAARFPGFTVAPETNALMQKMVAAGEVDALVPER 176 D+R RVFRHVSDAF+EDPVRILR+ARFAARF FTVA ET ALM++MV AGEVDALVPER Sbjct: 121 DLRARVFRHVSDAFVEDPVRILRIARFAARFADFTVADETLALMRRMVDAGEVDALVPER 180 Query: 177 VWQELARGMMEQMPSRMFNVLRDCGALARILPELDALWGVPQPAKYHPEIDTGVHVMMVL 236 VWQE+ARG+ME PSRMF VLRDCGALARILPE+DALWGVPQ A YHPE+DTGVHVMMV+ Sbjct: 181 VWQEIARGLMEAKPSRMFAVLRDCGALARILPEVDALWGVPQRADYHPEVDTGVHVMMVV 240 Query: 237 DYAAGRGYSLGVRFAALMHDLGKGTTPPDLWPSHHGHEGRSVELVQGICDRLKVPNDCRD 296 DYAA +GYSL VRFAAL HDLGKGTTP D+ P H GHE RSVEL++ +C+RL+VPN+CRD Sbjct: 241 DYAAKQGYSLAVRFAALTHDLGKGTTPADVLPRHVGHESRSVELLKPLCERLRVPNECRD 300 Query: 297 LAVITAREHGNVGRAFELRPATIVNLLARCDGFRKPERFHDMLQASECDRRGRTGFEDVA 356 LA++ AREHGN+ R E+ A +V L R D RKP RF ++LQA E D RGR G + Sbjct: 301 LALVVAREHGNLHRVMEMGAAALVRLFERSDALRKPARFAELLQACESDARGRLGLDAQP 360 Query: 357 FPQLEYLMGALKAAQGVDAGAIAAKHREQPQRIPEAILAARTAAVAEYAA 406 +PQ E L AL AA+ VDAGAIA ++I EA+ AR AVA+ A Sbjct: 361 YPQAERLRVALAAARSVDAGAIARGIGSDTEKIKEAVHRARIQAVAQALA 410