BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0667.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirill... 672 0.0 emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiim... 658 0.0 ref|YP_001098548.1| peptide chain release factor 1 [Herminiimona... 658 0.0 ref|YP_001351903.1| peptide chain release factor 1 [Janthinobact... 658 0.0 ref|YP_004754560.1| peptide chain release factor 1 [Collimonas f... 638 0.0 >ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirillum seropedicae SmR1] gb|ADJ65744.1| peptide chain release factor 1 (RF-1) protein [Herbaspirillum seropedicae SmR1] Length = 359 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/355 (90%), Positives = 341/355 (96%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 MLAKLDQLAERLEELN+LL Q++AT+ MDN+RKMTREHAELGPLVALYH YVQAA DI T Sbjct: 5 MLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHEYVQAAEDIRT 64 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQELL+DPDMK FAQEEI+GAKARME LE DLQKMLLPKDPNDERNIFLEIRAGTGGDES Sbjct: 65 AQELLADPDMKAFAQEEIDGAKARMEGLELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 124 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMYTR+AER RWQVE++SAS+SE+GGYKEVI RI G GAYSRLKFESGGHRV Sbjct: 125 ALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGLGAYSRLKFESGGHRV 184 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVAVMPEADEV DV+INPADIRIDTYRASGAGGQHINKTDSAV Sbjct: 185 QRVPATETQGRIHTSACTVAVMPEADEVGDVEINPADIRIDTYRASGAGGQHINKTDSAV 244 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITH+PTGIVVECQDDRSQHKNKA A+KVLAARIKDVQLR+QQS+EAATRKSLIGSGDRS Sbjct: 245 RITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSEEAATRKSLIGSGDRS 304 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGDE 355 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL+ELTNALITEHQAELLAQLGD+ Sbjct: 305 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNALITEHQAELLAQLGDD 359 >emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiimonas arsenicoxydans] Length = 361 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/354 (89%), Positives = 331/354 (93%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 MLAKLDQL ERL ELN LLMQ++ATS+MDNYRKMTREHAELGPLVALY Y QA NDI Sbjct: 6 MLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADNDIKD 65 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQ +LSDPDMKEFAQEE+ AK RME LE DLQKMLLPKDPNDERNIFLEIRAGTGGDES Sbjct: 66 AQGMLSDPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 125 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMYTRFAERNRWQ+EM+S S SEVGGYKEVIVRI G GAYS+LKFESGGHRV Sbjct: 126 ALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHRV 185 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVAVMPEADEVEDV+INPAD+RIDTYRASGAGGQHINKTDSAV Sbjct: 186 QRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAV 245 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITH+PTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQS+EAATRKSLIGSGDRS Sbjct: 246 RITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKSLIGSGDRS 305 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 354 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL ELTNAL EHQA+LLA LGD Sbjct: 306 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQADLLAALGD 359 >ref|YP_001098548.1| peptide chain release factor 1 [Herminiimonas arsenicoxydans] Length = 356 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/354 (89%), Positives = 331/354 (93%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 MLAKLDQL ERL ELN LLMQ++ATS+MDNYRKMTREHAELGPLVALY Y QA NDI Sbjct: 1 MLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADNDIKD 60 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQ +LSDPDMKEFAQEE+ AK RME LE DLQKMLLPKDPNDERNIFLEIRAGTGGDES Sbjct: 61 AQGMLSDPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMYTRFAERNRWQ+EM+S S SEVGGYKEVIVRI G GAYS+LKFESGGHRV Sbjct: 121 ALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHRV 180 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVAVMPEADEVEDV+INPAD+RIDTYRASGAGGQHINKTDSAV Sbjct: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAV 240 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITH+PTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQS+EAATRKSLIGSGDRS Sbjct: 241 RITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKSLIGSGDRS 300 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 354 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL ELTNAL EHQA+LLA LGD Sbjct: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQADLLAALGD 354 >ref|YP_001351903.1| peptide chain release factor 1 [Janthinobacterium sp. Marseille] sp|A6SUF6.1|RF1_JANMA RecName: Full=Peptide chain release factor 1; Short=RF-1 gb|ABR88624.1| RF-1 peptide chain release factor [Janthinobacterium sp. Marseille] Length = 360 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/354 (89%), Positives = 333/354 (94%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 MLAKLDQL ERL+ELN LLMQ++ATS+MDNYRKMTREHAELGPLVALY Y QA +DI Sbjct: 5 MLAKLDQLTERLDELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYRQADSDIQD 64 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQ +LSDPDMKEFAQEEI AK RME LE DLQKMLLPKDPND+RNIFLEIRAGTGGDE+ Sbjct: 65 AQGMLSDPDMKEFAQEEIAAAKTRMEQLEIDLQKMLLPKDPNDDRNIFLEIRAGTGGDEA 124 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMY+RFAERNRWQ+EM+S S SEVGGYKEVIVRI GFGAYS+LKFESGGHRV Sbjct: 125 ALFAGDLLRMYSRFAERNRWQIEMVSESASEVGGYKEVIVRIIGFGAYSKLKFESGGHRV 184 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVA+MPEADEVEDV+INPAD+RIDTYRASGAGGQHINKTDSAV Sbjct: 185 QRVPATETQGRIHTSACTVAIMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAV 244 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITH+PTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS Sbjct: 245 RITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 304 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 354 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL ELTNAL EHQAELLA LGD Sbjct: 305 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQAELLAALGD 358 >ref|YP_004754560.1| peptide chain release factor 1 [Collimonas fungivorans Ter331] gb|AEK63737.1| Peptide chain release factor 1 [Collimonas fungivorans Ter331] Length = 360 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/354 (88%), Positives = 329/354 (92%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 MLAKLDQLA RL E+ +LLMQ++AT+ MD+YRK+TREHAELGPLV LY Y+QA DI Sbjct: 5 MLAKLDQLANRLVEVGDLLMQEDATASMDSYRKLTREHAELGPLVELYQAYLQADADIAA 64 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQE+ SDPDMKEFAQ+EI AKARME L+ DLQKMLLPKDPNDERNIFLEIRAGTGGDES Sbjct: 65 AQEMQSDPDMKEFAQDEIVAAKARMEQLQGDLQKMLLPKDPNDERNIFLEIRAGTGGDES 124 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMYTRFAERNRWQVEM+S S SEVGGYKEVIVR+ GFGAYS+LKFESGGHRV Sbjct: 125 ALFAGDLLRMYTRFAERNRWQVEMVSESSSEVGGYKEVIVRVIGFGAYSKLKFESGGHRV 184 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVA+MPEADEV DVDINPADIRIDTYRASGAGGQHINKTDSAV Sbjct: 185 QRVPATETQGRIHTSACTVAIMPEADEVGDVDINPADIRIDTYRASGAGGQHINKTDSAV 244 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKD QLR QQSKEAATRKSLIGSGDRS Sbjct: 245 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDGQLRAQQSKEAATRKSLIGSGDRS 304 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 354 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNAL EHQA+LLA LGD Sbjct: 305 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALAAEHQADLLAALGD 358