BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0660.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777650.1| two component response regulator protein [He...    97   9e-19
ref|ZP_01914091.1| Two component transcriptional regulator, wing...    94   5e-18
ref|YP_002912003.1| putative two component system, response regu...    86   3e-15
ref|ZP_08506358.1| Putative two-component regulatory response re...    84   5e-15
ref|ZP_08019718.1| DNA-binding response regulator [Lautropia mir...    84   8e-15

>ref|YP_003777650.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65742.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 52/60 (86%), Gaps = 2/60 (3%)

Query: 40  PLSRVTLQESVWGAEDDNAVPTRTIDTHISRVRSKLALKPENGYRLSTVYGYGYQLERLD 99
           PLSR  LQE VWGAE +  +PTRTIDTH+SRVR+KL L+P +GYRL+TVYGYGYQLERLD
Sbjct: 176 PLSRAFLQEKVWGAEPE--LPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD 233


>ref|ZP_01914091.1| Two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
 gb|EDM85152.1| Two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
          Length = 246

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 65/93 (69%), Gaps = 3/93 (3%)

Query: 8   FPPKAKSATAAKERLQIIIARAQC-DVLSHTPXPLSRVTLQESVWGAEDDNAVPTRTIDT 66
           F PK  +     +R+ +    + C   +SH   PLSR  +QE+VWG + D  +P+RT+DT
Sbjct: 137 FHPKFSTIVRHTKRVVMTQKNSICASAVSHLGKPLSRSHIQETVWGRDTD--LPSRTMDT 194

Query: 67  HISRVRSKLALKPENGYRLSTVYGYGYQLERLD 99
           HISRVRSKLAL+PE G+RL+ VYG+GY+LE++D
Sbjct: 195 HISRVRSKLALRPEQGFRLTPVYGFGYKLEQVD 227


>ref|YP_002912003.1| putative two component system, response regulator [Burkholderia
           glumae BGR1]
 gb|ACR29299.1| Putative two component system, response regulator [Burkholderia
           glumae BGR1]
          Length = 234

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 2/72 (2%)

Query: 33  VLSHTPXPLSRVTLQESVWGAEDDNAVPTRTIDTHISRVRSKLALKPENGYRLSTVYGYG 92
           +  H   PLSR  + + VW    D  VP+RT+DTHIS +R+KLAL+PENGYRL+ +YGYG
Sbjct: 165 LFQHVDQPLSRAHILDLVWKQATD--VPSRTMDTHISMLRTKLALRPENGYRLAPIYGYG 222

Query: 93  YQLERLDGPAAK 104
           Y+LERL   AA+
Sbjct: 223 YRLERLQQGAAE 234


>ref|ZP_08506358.1| Putative two-component regulatory response regulator receiver
           precursor, CHEY-like protein [Methyloversatilis
           universalis FAM5]
 gb|EGK70537.1| Putative two-component regulatory response regulator receiver
           precursor, CHEY-like protein [Methyloversatilis
           universalis FAM5]
          Length = 235

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 54/67 (80%), Gaps = 4/67 (5%)

Query: 41  LSRVTLQESVWGAEDDNAVPTRTIDTHISRVRSKLALKPENGYRLSTVYGYGYQLERL-- 98
           +SR  L ES+WG + D  VPTRT+DTH+SRVRSKLAL+PENGYRL++ Y YGY+LER+  
Sbjct: 167 VSRGHLLESLWGRKGD--VPTRTVDTHMSRVRSKLALRPENGYRLASTYNYGYRLERVAD 224

Query: 99  DGPAAKK 105
           DG  A++
Sbjct: 225 DGKRAEE 231


>ref|ZP_08019718.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
 gb|EFV93671.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
          Length = 244

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%), Gaps = 2/65 (3%)

Query: 34  LSHTPXPLSRVTLQESVWGAEDDNAVPTRTIDTHISRVRSKLALKPENGYRLSTVYGYGY 93
           L++   PLSR  ++E+VWG   D+ VP+RT+DTH+SRVRSKL L+PE+GY L+ VY YGY
Sbjct: 164 LNNIGKPLSRGHIREAVWGR--DSEVPSRTMDTHVSRVRSKLTLRPESGYLLAPVYSYGY 221

Query: 94  QLERL 98
           +LERL
Sbjct: 222 RLERL 226