BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0646.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777644.1| ABC transporter periplasmic/surface lipoprot... 369 e-100 ref|YP_004750885.1| ABC transporter periplasmic protein [Collimo... 333 2e-89 ref|YP_725449.1| ABC-type transporter, periplasmic component [Ra... 327 6e-88 ref|YP_004684728.1| ABC transporter permease [Cupriavidus necato... 326 2e-87 ref|YP_296706.1| basic membrane lipoprotein [Ralstonia eutropha ... 323 1e-86 >ref|YP_003777644.1| ABC transporter periplasmic/surface lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ65736.1| ABC-type transport system, periplasmic component/surface lipoprotein [Herbaspirillum seropedicae SmR1] Length = 379 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/210 (90%), Positives = 195/210 (92%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKEEATPAAAPAPAAAAPAAAEPLKVAFVYIGPVGD 60 MKISRRAS+ MLATLAAATLIGCGKKEE AA A AAA AA+PLKVAFVYIGPVGD Sbjct: 1 MKISRRASLTMLATLAAATLIGCGKKEEPAAAAPAAAPAAAAPAADPLKVAFVYIGPVGD 60 Query: 61 AGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFGYM 120 AGWTFAHD GRKAVE KFGDKVKTTFVEN+PESAADAERV RQLATDGNKLIFGTTFGYM Sbjct: 61 AGWTFAHDKGRKAVEEKFGDKVKTTFVENIPESAADAERVFRQLATDGNKLIFGTTFGYM 120 Query: 121 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV 180 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV Sbjct: 121 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV 180 Query: 181 PIPEVVRNIDAFTLGARSINPKATTRVVQV 210 PIPEV+RNID+FTLGARS+NPKATT VV V Sbjct: 181 PIPEVIRNIDSFTLGARSVNPKATTAVVWV 210 >ref|YP_004750885.1| ABC transporter periplasmic protein [Collimonas fungivorans Ter331] gb|AEK60062.1| ABC-type transporter, periplasmic component [Collimonas fungivorans Ter331] Length = 391 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 189/211 (89%), Positives = 196/211 (92%), Gaps = 1/211 (0%) Query: 1 MKISRRASIAMLATLAAATLIGCGKK-EEATPAAAPAPAAAAPAAAEPLKVAFVYIGPVG 59 MKISRRAS+AML LAAATLIGCGKK E PAA+ AAAPA AEPLKVAFVYIGPVG Sbjct: 12 MKISRRASLAMLTALAAATLIGCGKKGETPAPAASATAPAAAPAKAEPLKVAFVYIGPVG 71 Query: 60 DAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFGY 119 DAGWTFAHD GRKAVE K+GDKVKTTFVENVPESAADAERV+RQLA DGNKLIFGTTFGY Sbjct: 72 DAGWTFAHDKGRKAVEEKYGDKVKTTFVENVPESAADAERVIRQLAVDGNKLIFGTTFGY 131 Query: 120 MEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVAS 179 MEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVAS Sbjct: 132 MEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVAS 191 Query: 180 VPIPEVVRNIDAFTLGARSINPKATTRVVQV 210 VPIPEV+RNID+FTLGARS+NPKATTRVV V Sbjct: 192 VPIPEVIRNIDSFTLGARSVNPKATTRVVWV 222 >ref|YP_725449.1| ABC-type transporter, periplasmic component [Ralstonia eutropha H16] emb|CAJ92081.1| ABC-type transporter, periplasmic component [Ralstonia eutropha H16] Length = 381 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 172/212 (81%), Positives = 186/212 (87%), Gaps = 2/212 (0%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKEEATPA--AAPAPAAAAPAAAEPLKVAFVYIGPV 58 M ++RR ++A LA A TL GCGKKE PA A A A AA AEPLKVAFVYIGPV Sbjct: 1 MIVTRRKTLAALAATALLTLAGCGKKEADKPAETAGAASAPAAEQKAEPLKVAFVYIGPV 60 Query: 59 GDAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFG 118 GDAGWTFAHDNGRKAVE KFGDKVKT+FVENVPESAADAERV R LA+ GNKLIFGTTFG Sbjct: 61 GDAGWTFAHDNGRKAVEEKFGDKVKTSFVENVPESAADAERVFRDLASQGNKLIFGTTFG 120 Query: 119 YMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVA 178 YME+MLKVAKEFPDVKFEHATGFKTA+NLAQYDVRTYEGAYLAGVVAGKMSK+GK+GVVA Sbjct: 121 YMESMLKVAKEFPDVKFEHATGFKTAENLAQYDVRTYEGAYLAGVVAGKMSKTGKMGVVA 180 Query: 179 SVPIPEVVRNIDAFTLGARSINPKATTRVVQV 210 SVPIPEV+RNID+FTLGARS+NPKAT +VV V Sbjct: 181 SVPIPEVIRNIDSFTLGARSVNPKATVKVVWV 212 >ref|YP_004684728.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI76247.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 381 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 169/212 (79%), Positives = 183/212 (86%), Gaps = 2/212 (0%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKEEATPAAAPAPAAAAPAA--AEPLKVAFVYIGPV 58 M ++RR ++A LA A L GCGKKE PA A+A A AEPLKVAFVYIGPV Sbjct: 1 MIVTRRKTLAALAATAVLALAGCGKKEADKPAETAGAASAPAAGQKAEPLKVAFVYIGPV 60 Query: 59 GDAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFG 118 GDAGWTFAHD GRKAVE KFGDKVKTTFVENVPESAADAERV R LA+ GNKLIFGTTFG Sbjct: 61 GDAGWTFAHDTGRKAVEEKFGDKVKTTFVENVPESAADAERVFRDLASQGNKLIFGTTFG 120 Query: 119 YMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVA 178 YME+MLKVAKEFPDVKFEHATGFKTA+NLAQYDVRTYEGAYLAGVVAGKMSK+GK+GVVA Sbjct: 121 YMESMLKVAKEFPDVKFEHATGFKTAENLAQYDVRTYEGAYLAGVVAGKMSKTGKMGVVA 180 Query: 179 SVPIPEVVRNIDAFTLGARSINPKATTRVVQV 210 SVPIPEV+RNID+FTLGARS+NPKAT +VV V Sbjct: 181 SVPIPEVIRNIDSFTLGARSVNPKATVKVVWV 212 >ref|YP_296706.1| basic membrane lipoprotein [Ralstonia eutropha JMP134] gb|AAZ61862.1| nucleoside-binding protein [Ralstonia eutropha JMP134] Length = 381 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 171/212 (80%), Positives = 185/212 (87%), Gaps = 2/212 (0%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKE--EATPAAAPAPAAAAPAAAEPLKVAFVYIGPV 58 M ++RR ++A LA A L GCGKKE + AAPA A AA AEPLKVAFVYIGPV Sbjct: 1 MIVTRRKTLAALAATALLALAGCGKKEAEKPAETAAPASAPAAEQKAEPLKVAFVYIGPV 60 Query: 59 GDAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFG 118 GDAGWT+AHD GRKAVE KFGDKVKTTFVENVPESAADAERV R LA+ GNKLIFGTTFG Sbjct: 61 GDAGWTYAHDAGRKAVEEKFGDKVKTTFVENVPESAADAERVFRDLASQGNKLIFGTTFG 120 Query: 119 YMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVA 178 YME+MLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSK+GK+GVVA Sbjct: 121 YMESMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKTGKMGVVA 180 Query: 179 SVPIPEVVRNIDAFTLGARSINPKATTRVVQV 210 SVPIPEV+RNID+FTLGARS+NPKAT +VV V Sbjct: 181 SVPIPEVIRNIDSFTLGARSVNPKATVKVVWV 212