BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0645.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777643.1| ABC transporter permease [Herbaspirillum ser... 520 e-145 ref|YP_004750884.1| putative transmembrane ABC transporter prote... 518 e-145 emb|CBJ37408.1| putative ABC transport system (permease protein)... 490 e-136 ref|YP_725450.1| ABC-type transporter, permease component [Ralst... 489 e-136 ref|NP_520296.1| transmembrane ABC transporter protein [Ralstoni... 489 e-136 >ref|YP_003777643.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65735.1| ABC-type transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 274/306 (89%), Positives = 292/306 (95%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+QLAPLIAASINAGTPLLLAAIGLLINER+GVLNLGAEGMMLVAAIAGFAVGYTT+SPL Sbjct: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGYTTKSPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF+AGA+CGMLMATLF+WLAL LATNQVATGLALSIFGAGLSAF+GQRFVGLALP+QST Sbjct: 61 LGFMAGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQST 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 VP L +LPF+G A F QHWM+YVA LC A WFLYRTRAGL+LRAVGESPESAHALGY Sbjct: 121 SVPLLGDLPFLGQALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 SVRGIR+LALLFGGACCGLAGAY+SLVYTPMWVEGLV+GRGWIALALTAFATWRPARVLL Sbjct: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 GSLLFGGVTI QFYLQG+GVT+PSQILSM PY+ATIVVLALISRNPDWIRLNMPASLGKP Sbjct: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPGAS Sbjct: 301 FRPGAS 306 >ref|YP_004750884.1| putative transmembrane ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK60061.1| putative transmembrane ABC transporter protein [Collimonas fungivorans Ter331] Length = 306 Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust. Identities = 273/306 (89%), Positives = 289/306 (94%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+Q A LIAASINAGTPLLLAA+GLLINERAGVLNLGAEGMMLVAAIAGFAVGYTT SPL Sbjct: 1 MEQFASLIAASINAGTPLLLAALGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTHSPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGFLAGAL G+LMA LFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQ+ Sbjct: 61 LGFLAGALSGVLMAALFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQTL 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 +P L ++PF+G A F QHWM+Y+ALLLCAAI WF+YRTRAGL+LRAVGESPESAHALGY Sbjct: 121 AIPVLKDIPFIGQALFQQHWMSYLALLLCAAIGWFIYRTRAGLVLRAVGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL Sbjct: 181 PVRWIRFAALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+LLFGGVTILQFYLQG+GVT+PSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP Sbjct: 241 GALLFGGVTILQFYLQGMGVTVPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 F+P AS Sbjct: 301 FKPDAS 306 >emb|CBJ37408.1| putative ABC transport system (permease protein) [Ralstonia solanacearum CMR15] Length = 306 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 253/306 (82%), Positives = 280/306 (91%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+ LAPLIAASINAGTPLLLAA+GLL+NERAGVLNLGAEGMMLVAA+AGF VGY T+ PL Sbjct: 1 MESLAPLIAASINAGTPLLLAALGLLMNERAGVLNLGAEGMMLVAAVAGFMVGYQTQIPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF AGAL GM+MA LF+WLALVL TNQVATGLALSIFG GLSAF+GQRFVG++LP+Q+ Sbjct: 61 LGFAAGALAGMVMAALFAWLALVLVTNQVATGLALSIFGTGLSAFMGQRFVGMSLPAQAY 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 G+PGL +LPFVGPA F QHWM Y ALLLC AIAWFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 GIPGLKSLPFVGPALFGQHWMVYFALLLCGAIAWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSL+YTPMWVE +V+GRGWIALALT FATWRP R+L Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLIYTPMWVENMVAGRGWIALALTTFATWRPLRILF 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+LLFGGVTILQFYLQG+GV++PSQILSM P+ ATIVVLA+ISRNPDWIRLNMPASLGKP Sbjct: 241 GALLFGGVTILQFYLQGIGVSVPSQILSMAPFAATIVVLAVISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPGA+ Sbjct: 301 FRPGAA 306 >ref|YP_725450.1| ABC-type transporter, permease component [Ralstonia eutropha H16] emb|CAJ92082.1| ABC-type transporter, permease component [Ralstonia eutropha H16] Length = 306 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 255/304 (83%), Positives = 276/304 (90%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+QLAPLIA +INAGTPLLLAA+GLLINER+GVLNLGAEGMMLVAA+AGF VGY T+SPL Sbjct: 1 MEQLAPLIATAINAGTPLLLAALGLLINERSGVLNLGAEGMMLVAAVAGFMVGYQTQSPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF AGAL GMLMATLFSWLALVLATNQVATGLALSIFG GLSAF+GQRFVG A+P+Q+ Sbjct: 61 LGFAAGALAGMLMATLFSWLALVLATNQVATGLALSIFGTGLSAFMGQRFVGFAMPAQAK 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 VPGL +LPF GPAFF HWM Y +LLLC AI WFL+RTRAGL LRA+GE+PESAHALGY Sbjct: 121 AVPGLADLPFFGPAFFQHHWMVYFSLLLCFAIMWFLFRTRAGLTLRAIGEAPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSLVYTPMWVE LV+GRGWIALALT FATWRP RVL+ Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLVYTPMWVENLVAGRGWIALALTTFATWRPGRVLV 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+ LFGGVTILQFYLQG+GV++PSQ LSMLPY ATIVVLALISRNP WIRLNMPASLGKP Sbjct: 241 GAWLFGGVTILQFYLQGIGVSVPSQFLSMLPYAATIVVLALISRNPAWIRLNMPASLGKP 300 Query: 301 FRPG 304 FRPG Sbjct: 301 FRPG 304 >ref|NP_520296.1| transmembrane ABC transporter protein [Ralstonia solanacearum GMI1000] emb|CAD15882.1| probable transmembrane abc transporter protein [Ralstonia solanacearum GMI1000] Length = 306 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 252/306 (82%), Positives = 279/306 (91%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+ LAPLIAASINAGTPLLLAA+GLL+NERAGVLNLGAEGMMLVAA+AGF VGY T+ PL Sbjct: 1 MESLAPLIAASINAGTPLLLAALGLLMNERAGVLNLGAEGMMLVAAVAGFMVGYQTQIPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF AGAL GM+MA LF+WLALVL TNQVATGLALSIFG GLSAF+GQRFVG++LP+Q+ Sbjct: 61 LGFAAGALAGMVMAALFAWLALVLVTNQVATGLALSIFGTGLSAFMGQRFVGMSLPAQAY 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 G+PGL +LPFVGPA F QHWM Y ALLLC AIAWFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 GIPGLKSLPFVGPALFGQHWMVYCALLLCGAIAWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSL+YTPMWVE +V+GRGWIALALT FATWRP R+L Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLIYTPMWVENMVAGRGWIALALTTFATWRPLRILF 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+LLFGGVTILQFYLQG+GV++PSQILSM P+ ATIVVLA+ISRNPDWIRLNMPASLGKP Sbjct: 241 GALLFGGVTILQFYLQGIGVSVPSQILSMAPFAATIVVLAVISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPG + Sbjct: 301 FRPGTA 306