BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0636.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777636.1| transmembrane protein [Herbaspirillum serope...   144   3e-33
ref|YP_583041.1| hypothetical protein Rmet_0886 [Cupriavidus met...   132   1e-29
ref|YP_296639.1| hypothetical protein Reut_A2433 [Ralstonia eutr...   130   6e-29
ref|YP_004684791.1| hypothetical protein CNE_1c09530 [Cupriavidu...   127   7e-28
ref|YP_003751971.1| hypothetical protein RPSI07_1318 [Ralstonia ...   124   4e-27

>ref|YP_003777636.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65728.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 76/80 (95%)

Query: 33  SFAQVQQVIETRCIQCHAAKPTLMPVPGKGILLDSKDGVLQHAQQIYQQAVVQKAMPLGN 92
           +FAQVQQVI+ RCIQCHAA+PTLMPVPGKG+LLDS + + QHAQQIYQQAVVQKAMPLGN
Sbjct: 329 AFAQVQQVIQARCIQCHAAQPTLMPVPGKGVLLDSPEHISQHAQQIYQQAVVQKAMPLGN 388

Query: 93  MTNITDDERALLGKWFEAGA 112
           MT+IT++ERA++GKWFEAGA
Sbjct: 389 MTHITEEERAVIGKWFEAGA 408


>ref|YP_583041.1| hypothetical protein Rmet_0886 [Cupriavidus metallidurans CH34]
 gb|ABF07772.1| Putative membrane protein [Cupriavidus metallidurans CH34]
          Length = 402

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 80/113 (70%), Gaps = 1/113 (0%)

Query: 2   AVVILAGVAAWIVPKSALQPAS-AVTQNAPAVSFAQVQQVIETRCIQCHAAKPTLMPVPG 60
            V  L  VA  I P+   Q AS A    A AVSF +VQ++I TRC+QCHA +P +MP   
Sbjct: 287 GVACLGVVAFMIAPQPRPQVASNAAGDAANAVSFVKVQEIINTRCVQCHAEQPKMMPTAA 346

Query: 61  KGILLDSKDGVLQHAQQIYQQAVVQKAMPLGNMTNITDDERALLGKWFEAGAK 113
           KGI LDS DG+  HAQ IYQQAV QKAMPLGN+T ITDDERALLG+WFE GAK
Sbjct: 347 KGIKLDSADGIKAHAQLIYQQAVQQKAMPLGNVTQITDDERALLGQWFEGGAK 399


>ref|YP_296639.1| hypothetical protein Reut_A2433 [Ralstonia eutropha JMP134]
 gb|AAZ61795.1| Protein of unknown function DUF989 [Ralstonia eutropha JMP134]
          Length = 401

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 79/111 (71%)

Query: 3   VVILAGVAAWIVPKSALQPASAVTQNAPAVSFAQVQQVIETRCIQCHAAKPTLMPVPGKG 62
           V  L  VA  I P+     A A  + + AVSFA+VQ+V+  RC+QCHAA+P +MP   KG
Sbjct: 288 VTALGVVAVLIAPQPRPTVAKAEGEASAAVSFAKVQEVVNARCVQCHAAQPKMMPTAAKG 347

Query: 63  ILLDSKDGVLQHAQQIYQQAVVQKAMPLGNMTNITDDERALLGKWFEAGAK 113
           I LD+ D +  HAQ IYQQAV QKAMPLGN+T ITDDERALLG+WFE GAK
Sbjct: 348 IKLDTADDIKSHAQLIYQQAVQQKAMPLGNVTQITDDERALLGQWFEGGAK 398


>ref|YP_004684791.1| hypothetical protein CNE_1c09530 [Cupriavidus necator N-1]
 gb|AEI76310.1| hypothetical membrane protein [Cupriavidus necator N-1]
          Length = 403

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 73/99 (73%)

Query: 15  PKSALQPASAVTQNAPAVSFAQVQQVIETRCIQCHAAKPTLMPVPGKGILLDSKDGVLQH 74
           P+ A+  A      A  VSFA+VQ+V+  RC+QCHAA+P +MP   KGI LD+ + +  H
Sbjct: 302 PRPAVAKAEGGDAAAATVSFAKVQEVLNARCVQCHAAQPKMMPTAAKGIKLDTAEDIKAH 361

Query: 75  AQQIYQQAVVQKAMPLGNMTNITDDERALLGKWFEAGAK 113
           AQ IYQQAV QKAMPLGN+T ITDDERALLG+WFE GAK
Sbjct: 362 AQLIYQQAVQQKAMPLGNVTQITDDERALLGQWFEGGAK 400


>ref|YP_003751971.1| hypothetical protein RPSI07_1318 [Ralstonia solanacearum PSI07]
 emb|CBJ50678.1| conserved membrane protein of unknown function, DUF989 [Ralstonia
           solanacearum PSI07]
 emb|CCA81951.1| conserved membrane hypothetical protein,DUF989 [blood disease
           bacterium R229]
          Length = 407

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 6/117 (5%)

Query: 3   VVILAGVAAWIVP--KSALQPASAVTQNAPAVS----FAQVQQVIETRCIQCHAAKPTLM 56
           V +L G A W+ P  + A   A+A +   PA S    FA+VQ V+  RC QCH+A PTLM
Sbjct: 288 VALLLGTAVWLAPVQRPAAPEANAASVTVPAASGGSDFAKVQAVVTARCYQCHSAHPTLM 347

Query: 57  PVPGKGILLDSKDGVLQHAQQIYQQAVVQKAMPLGNMTNITDDERALLGKWFEAGAK 113
           P P KG+LLD+ + +  HAQ +YQQAV QK MPLGN+T +TD+ER L+ KWFE GAK
Sbjct: 348 PSPAKGVLLDTPEQLAAHAQLVYQQAVQQKLMPLGNVTQMTDEERTLIAKWFEGGAK 404