BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0634.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777632.1| transcription regulator protein [Herbaspiril... 405 e-111 ref|YP_583039.1| GntR family transcriptional regulator [Cupriavi... 319 2e-85 ref|YP_296641.1| GntR family transcriptional regulator [Ralstoni... 311 7e-83 ref|YP_004684789.1| GntR family transcriptional regulator [Cupri... 310 1e-82 ref|YP_725518.1| GntR family transcriptional regulator [Ralstoni... 310 1e-82 >ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65724.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/244 (81%), Positives = 215/244 (88%), Gaps = 2/244 (0%) Query: 1 MTKPSKTSR--SPLASHPAVRDHSPAVEERLYQDIYDAIMEHRLPPRTKLTEQVLCQIYD 58 M K SK SR +P + RD++ AVEER+YQDIYDAIMEHRLPPRTKLTEQ LCQIYD Sbjct: 1 MNKASKASRPATPARAPARERDNAVAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYD 60 Query: 59 TARHTVRKVLSRLATEGMVDLEANRGAFIASPSHAEVKDMFELRNIIEYAVLDKVGREAS 118 TARHTVRKVL+RLA EGMVDLEANRGAFIASPS AEV+DMFELRNI+E+AVL+K+G A Sbjct: 61 TARHTVRKVLARLAAEGMVDLEANRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTAG 120 Query: 119 TRQIAGLRKMVEEERNSYLTGDRPRWIRLSAQFHLALAELTGNALLVDTLRKLVSRTTLM 178 TRQIAGLR+MVEEER+ YL GDRPRWIRLSAQFHLALAELTGNALLV+TLRKLVSRTTLM Sbjct: 121 TRQIAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLM 180 Query: 179 IAKTEAPGHNACSFDEHDTVLAALENGDIAQAQEHMAHHLHLCEDRVRPSDDDHFDLRSV 238 IAKTEAPGHNACSFDEH+TVL ALE GDI AQ HMAHHLHLCEDRVRP DD FDLR+V Sbjct: 181 IAKTEAPGHNACSFDEHETVLEALEKGDIKAAQAHMAHHLHLCEDRVRPDADDQFDLRAV 240 Query: 239 LGKS 242 LGK Sbjct: 241 LGKG 244 >ref|YP_583039.1| GntR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF07770.1| transcriptional regulator, GntR-family [Cupriavidus metallidurans CH34] Length = 247 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 160/233 (68%), Positives = 185/233 (79%), Gaps = 5/233 (2%) Query: 16 PAVRDHSPA----VEERLYQDIYDAIMEHRLPPRTKLTEQVLCQIYDTARHTVRKVLSRL 71 PA+ D+ PA VEER+Y +IYDAIMEHRLPPRTKLTE LC+IY TARHTVRKVLSRL Sbjct: 15 PALTDNKPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKVLSRL 74 Query: 72 ATEGMVDLEANRGAFIASPSHAEVKDMFELRNIIEYAVLDKVGREASTRQ-IAGLRKMVE 130 A +GMVDLE NRGAFIASPS E DMFELR ++E AVLDK+ + R IA LRKMV Sbjct: 75 AADGMVDLEPNRGAFIASPSTDEAHDMFELRQMLERAVLDKLASLPNVRTVIAPLRKMVN 134 Query: 131 EERNSYLTGDRPRWIRLSAQFHLALAELTGNALLVDTLRKLVSRTTLMIAKTEAPGHNAC 190 +ER ++LT +RPRWIRLSA+FH ALAEL+GN LLV +R+LVSRTTLMIA E+PGHNAC Sbjct: 135 DERQAFLTHERPRWIRLSAEFHTALAELSGNQLLVTMMRRLVSRTTLMIASVESPGHNAC 194 Query: 191 SFDEHDTVLAALENGDIAQAQEHMAHHLHLCEDRVRPSDDDHFDLRSVLGKST 243 SFDEHD +L ALE GD A AQ MAHHL C +RV+P + +FDLRSVLG+ST Sbjct: 195 SFDEHDEILDALEQGDAALAQTRMAHHLGACAERVQPDEPGNFDLRSVLGRST 247 >ref|YP_296641.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ61797.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134] Length = 252 Score = 311 bits (796), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 154/221 (69%), Positives = 176/221 (79%), Gaps = 1/221 (0%) Query: 24 AVEERLYQDIYDAIMEHRLPPRTKLTEQVLCQIYDTARHTVRKVLSRLATEGMVDLEANR 83 +VE+R+Y +IYDAIMEHRLPPRTKLTE LC+IY TARHTVRKVLS LA +GMVDLE NR Sbjct: 32 SVEDRMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKVLSHLAADGMVDLEPNR 91 Query: 84 GAFIASPSHAEVKDMFELRNIIEYAVLDKVGREASTRQ-IAGLRKMVEEERNSYLTGDRP 142 GAFIASPS E DMFELR ++E AVLDK+ + IA LRKMV ER ++LT DRP Sbjct: 92 GAFIASPSTDEAHDMFELRQMLERAVLDKLAAMPDVKTVIAPLRKMVASERKAFLTHDRP 151 Query: 143 RWIRLSAQFHLALAELTGNALLVDTLRKLVSRTTLMIAKTEAPGHNACSFDEHDTVLAAL 202 WIRLSA+FH ALAEL+GNALLV+ +R+LVSRTTLMIA EAPG+NACSFDEH+ +L AL Sbjct: 152 TWIRLSAEFHTALAELSGNALLVNMMRRLVSRTTLMIASVEAPGNNACSFDEHEEILDAL 211 Query: 203 ENGDIAQAQEHMAHHLHLCEDRVRPSDDDHFDLRSVLGKST 243 E GD A AQ MAHHL C DRV+P D FDLRSVLG+ST Sbjct: 212 EQGDAALAQSRMAHHLGACADRVQPDDPGAFDLRSVLGRST 252 >ref|YP_004684789.1| GntR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI76308.1| transcriptional regulator GntR family [Cupriavidus necator N-1] Length = 256 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/232 (66%), Positives = 181/232 (78%), Gaps = 1/232 (0%) Query: 13 ASHPAVRDHSPAVEERLYQDIYDAIMEHRLPPRTKLTEQVLCQIYDTARHTVRKVLSRLA 72 A PA +VEER+Y +IYDAIMEHRLPPRTKLTE LC+IY TARHTVRKVLS LA Sbjct: 25 AGKPAKPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKVLSHLA 84 Query: 73 TEGMVDLEANRGAFIASPSHAEVKDMFELRNIIEYAVLDKVGREASTRQ-IAGLRKMVEE 131 +GMVDLE NRGAFIASPS E DMFELR ++E AVL+K+ + IA LR+MV Sbjct: 85 ADGMVDLEPNRGAFIASPSTDEAHDMFELRQMLERAVLEKLAGMPDVKTVIAPLRQMVAS 144 Query: 132 ERNSYLTGDRPRWIRLSAQFHLALAELTGNALLVDTLRKLVSRTTLMIAKTEAPGHNACS 191 ER ++LT DRP+WIRLSA+FH ALAEL+GNALLV+ +R+LVSRTTLMIA EAPG+NACS Sbjct: 145 ERQAFLTHDRPKWIRLSAEFHTALAELSGNALLVNMMRRLVSRTTLMIASVEAPGNNACS 204 Query: 192 FDEHDTVLAALENGDIAQAQEHMAHHLHLCEDRVRPSDDDHFDLRSVLGKST 243 FDEH+ +L ALE G+ A AQ MAHHL C DRV+P + +FDLRSVLG+ST Sbjct: 205 FDEHEEILDALEQGNAALAQSRMAHHLGACADRVQPDEPGNFDLRSVLGRST 256 >ref|YP_725518.1| GntR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ92150.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 256 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/232 (66%), Positives = 181/232 (78%), Gaps = 1/232 (0%) Query: 13 ASHPAVRDHSPAVEERLYQDIYDAIMEHRLPPRTKLTEQVLCQIYDTARHTVRKVLSRLA 72 A PA +VEER+Y +IYDAIMEHRLPPRTKLTE LC+IY TARHTVRKVLS LA Sbjct: 25 AGKPARPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKVLSHLA 84 Query: 73 TEGMVDLEANRGAFIASPSHAEVKDMFELRNIIEYAVLDKVGREASTRQ-IAGLRKMVEE 131 +GMVDLE NRGAFIASPS E DMFELR ++E AVL+K+ + IA LR+MV Sbjct: 85 ADGMVDLEPNRGAFIASPSTDEAHDMFELRQMLERAVLEKLAGMPDVKAVIAPLRQMVAS 144 Query: 132 ERNSYLTGDRPRWIRLSAQFHLALAELTGNALLVDTLRKLVSRTTLMIAKTEAPGHNACS 191 ER ++LT DRP+WIRLSA+FH ALAEL+GNALLV+ +R+LVSRTTLMIA EAPG+NACS Sbjct: 145 ERQAFLTHDRPKWIRLSAEFHTALAELSGNALLVNMMRRLVSRTTLMIASVEAPGNNACS 204 Query: 192 FDEHDTVLAALENGDIAQAQEHMAHHLHLCEDRVRPSDDDHFDLRSVLGKST 243 FDEH+ +L ALE G+ A AQ MAHHL C DRV+P + +FDLRSVLG+ST Sbjct: 205 FDEHEEILDALEQGNAALAQSRMAHHLGACADRVQPDEPGNFDLRSVLGRST 256