BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0628.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777628.1| amino acid ABC transporter permease [Herbasp... 384 e-105 ref|YP_004752056.1| amino acid ABC transporter permease [Collimo... 342 2e-92 ref|YP_001351725.1| ABC-type amino-acid transport system, permea... 331 5e-89 gb|EGP46368.1| amino acid ABC transporter permease [Achromobacte... 324 6e-87 gb|EFV82368.1| polar amino acid ABC transporter [Achromobacter x... 323 2e-86 >ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65720.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/223 (84%), Positives = 206/223 (92%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 MAY FDFL+ FDYTDV+VKGV TT+ELIA+GGV+G+AVGIFGAWARTQGP WLKP+VSGY Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VE+IRNTPFLVQLFFIFFGLPSL I ISE+ AAI+ MVINLGAYSTEIIRAGV AI RGQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 +EAA SLSMSR+Q FRHIILRPALQKIWPALSSQ+VIVMLGSAVCSQIAVEELSFAANFI Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGDKFIFARRAS 223 QGRNFRAFEAY++ATAIYL +AILLRQ+LRLIG FI ARR + Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 >ref|YP_004752056.1| amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK61233.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Collimonas fungivorans Ter331] Length = 226 Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 175/223 (78%), Positives = 204/223 (91%), Gaps = 1/223 (0%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 M+YHFDFLA FDY VLVKGVL T+ELIA+GGV+G+AVGIFGAWARTQGPRWL+P+VS Y Sbjct: 1 MSYHFDFLAPFDYPAVLVKGVLVTIELIAIGGVLGVAVGIFGAWARTQGPRWLRPLVSAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VELIRNTPFL+QLFFIFFGLP +G+QI EMQAA+L MVINLGAYS EIIRAG+ A++RGQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPGIGVQIGEMQAALLAMVINLGAYSCEIIRAGIAAVARGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 +EA LSL+M+R+Q FRH+IL PALQKIWPALSSQ+VIVMLGSAVCSQIAVEEL++AANFI Sbjct: 121 VEAGLSLAMTRMQIFRHVILPPALQKIWPALSSQVVIVMLGSAVCSQIAVEELAYAANFI 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGDKFIFARRAS 223 QGRNFR+FE+YLL+TAIYL +AI LRQLLRL GD+ +F R A+ Sbjct: 181 QGRNFRSFESYLLSTAIYLLLAIGLRQLLRLAGDR-LFGRPAA 222 >ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR91272.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 331 bits (849), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 191/223 (85%), Positives = 212/223 (95%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 MAY F+FL+ FDY+ VLVKGVLTTVELIAVGGV+G+AVGIFGAWARTQ PRWL+P+VS Y Sbjct: 1 MAYQFEFLSTFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQEPRWLRPVVSAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VELIRNTPFL+QLFFIFFGLPS+G+QI+EMQAAIL MVINLGAYSTEIIRAGV A++RGQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 +EAALSLSM+RVQ FRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI Sbjct: 121 IEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGDKFIFARRAS 223 QGRNFRAFEAYL+ATAIYL +AILLRQ+LRLIG +FIFAR ++ Sbjct: 181 QGRNFRAFEAYLIATAIYLLLAILLRQILRLIGTRFIFARSST 223 >gb|EGP46368.1| amino acid ABC transporter permease [Achromobacter xylosoxidans AXX-A] Length = 222 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 154/215 (71%), Positives = 181/215 (84%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 MAY FDF + FDYT VLVKG+ TVELIA G VVG+A+GI AWARTQGPRWL+ V+ Y Sbjct: 1 MAYQFDFASVFDYTPVLVKGIGVTVELIAFGAVVGVALGIGCAWARTQGPRWLRAPVTAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VE++RNTPFL+QLFF+FFGLPSLG+Q +EMQAA L M +NLGAYS EIIRAG++A RGQ Sbjct: 61 VEVVRNTPFLIQLFFVFFGLPSLGVQFNEMQAACLAMALNLGAYSAEIIRAGIDATPRGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 EA SL+M+R Q FRHI+L+PAL +IWPALSSQIVIVMLGSAVCSQIA E+L+FAANFI Sbjct: 121 YEAGASLAMTRWQVFRHIVLKPALARIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGDK 215 Q RNFRAFE Y + T IYLA+A+LLRQLLR+ G + Sbjct: 181 QSRNFRAFEVYFVTTGIYLALAVLLRQLLRMTGRR 215 >gb|EFV82368.1| polar amino acid ABC transporter [Achromobacter xylosoxidans C54] Length = 222 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 150/215 (69%), Positives = 180/215 (83%) Query: 1 MAYHFDFLAAFDYTDVLVKGVLTTVELIAVGGVVGIAVGIFGAWARTQGPRWLKPIVSGY 60 MAY FDF + FDYT VL+KG+ TVELIA G V G+A+GI AWARTQGPRWL+ V+ Y Sbjct: 1 MAYQFDFASVFDYTPVLIKGIGVTVELIAFGAVAGVALGIACAWARTQGPRWLRAPVTAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSLGIQISEMQAAILTMVINLGAYSTEIIRAGVNAISRGQ 120 VE++RNTPFL+QLFF+FFGLPSLG+Q SEMQAA L M +NLGAYS EIIRAG++A +GQ Sbjct: 61 VEVVRNTPFLIQLFFVFFGLPSLGVQFSEMQAACLAMALNLGAYSAEIIRAGIDATPKGQ 120 Query: 121 MEAALSLSMSRVQAFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 EA SL+M+R+Q FRH++L+PAL +IWPALSSQIVIVMLGSAVCSQIA E+L+FAANFI Sbjct: 121 YEAGASLAMTRLQVFRHVVLKPALARIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QGRNFRAFEAYLLATAIYLAMAILLRQLLRLIGDK 215 Q RNFRAFE Y + T IYL +A+LLRQLLR+ G + Sbjct: 181 QSRNFRAFEVYFVTTGIYLVLAVLLRQLLRMTGRR 215