BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0626.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777626.1| GntR family transcription regulator protein ...   157   7e-37
ref|YP_001351727.1| GntR family transcriptional regulator [Janth...   129   2e-28
ref|YP_550278.1| GntR family transcriptional regulator [Polaromo...   117   6e-25
ref|YP_004156514.1| GntR family transcriptional regulator [Vario...   114   5e-24
emb|CBA32229.1| hypothetical protein Csp_D31090 [Curvibacter put...   112   2e-23

>ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65718.1| GntR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 249

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 85/99 (85%)

Query: 1   VALCECLGNTLLSDTLRDLTARTTLTAMLHQSSEQAEDSCAEHVHIVAALERGDLAAAEQ 60
           V L ECLGN+LL++TLRDLTARTTLTAMLHQSSEQAEDSC+EHV IV ALERGDL  AEQ
Sbjct: 138 VCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIVEALERGDLEQAEQ 197

Query: 61  LMHDHLQHVEAGLNKAEVNDPLAPLRQALAPVSAVSAAS 99
           LMHDHLQHVE+GLN+   +DPL PLRQALA VS   AAS
Sbjct: 198 LMHDHLQHVESGLNQVRSSDPLEPLRQALASVSRQGAAS 236


>ref|YP_001351727.1| GntR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR91180.1| transcriptional regulator, GntR family [Janthinobacterium sp.
           Marseille]
          Length = 284

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 74/94 (78%)

Query: 1   VALCECLGNTLLSDTLRDLTARTTLTAMLHQSSEQAEDSCAEHVHIVAALERGDLAAAEQ 60
           V LCECLGN LLSDTLRDLTARTTLTAML QSS QA DSC +HVHIVAALE GD+  AE+
Sbjct: 136 VCLCECLGNNLLSDTLRDLTARTTLTAMLRQSSSQAVDSCEDHVHIVAALESGDIDEAER 195

Query: 61  LMHDHLQHVEAGLNKAEVNDPLAPLRQALAPVSA 94
           LM +HLQ VE+ L +   +DPL  LR AL PV+A
Sbjct: 196 LMLEHLQVVESTLYELAPSDPLNALRTALTPVAA 229


>ref|YP_550278.1| GntR family transcriptional regulator [Polaromonas sp. JS666]
 gb|ABE45380.1| transcriptional regulator, GntR family [Polaromonas sp. JS666]
          Length = 259

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 71/100 (71%), Gaps = 1/100 (1%)

Query: 1   VALCECLGNTLLSDTLRDLTARTTLTAMLHQSSEQAEDSCAEHVHIVAALERGDLAAAEQ 60
           V L ECLGN LL+DTLRD TARTTL AML+QSS  A  SC EHV IV ALE+GDL  AEQ
Sbjct: 130 VCLAECLGNNLLADTLRDFTARTTLIAMLYQSSHDAAQSCEEHVRIVQALEKGDLVLAEQ 189

Query: 61  LMHDHLQHVEAGLN-KAEVNDPLAPLRQALAPVSAVSAAS 99
           LM  H+  V+AGL  +A   DPLA LR AL+P+S   A S
Sbjct: 190 LMQAHIGSVQAGLQLQAAGGDPLAHLRSALSPLSPAKARS 229


>ref|YP_004156514.1| GntR family transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU38403.1| transcriptional regulator, GntR family [Variovorax paradoxus EPS]
          Length = 255

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 74/116 (63%), Gaps = 8/116 (6%)

Query: 1   VALCECLGNTLLSDTLRDLTARTTLTAMLHQSSEQAEDSCAEHVHIVAALERGDLAAAEQ 60
           V L ECLGNTLL+DTLRD TARTTL AML+QS+  A  SC +HV IVAALERGD AAAE 
Sbjct: 134 VCLAECLGNTLLADTLRDFTARTTLIAMLYQSTHDAVQSCEDHVQIVAALERGDHAAAEA 193

Query: 61  LMHDHLQHVEAGLNKAEVNDPLAPLRQALAPVSAVSAASVVGNAFAAPAKRKKTTS 116
           LM  H+  V++ L      DPLA LR ALAP+           A   P +RK + S
Sbjct: 194 LMATHIGTVQSALRVQAPTDPLAQLRDALAPLQ--------NTASTKPKRRKPSPS 241


>emb|CBA32229.1| hypothetical protein Csp_D31090 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 297

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 1   VALCECLGNTLLSDTLRDLTARTTLTAMLHQSSEQAEDSCAEHVHIVAALERGDLAAAEQ 60
           V L ECLGN+LL+DTLRD TARTTL AML+QSS  A  SCAEH  IV ALE+ D   AEQ
Sbjct: 170 VCLAECLGNSLLADTLRDFTARTTLIAMLYQSSHDAAHSCAEHGRIVEALEKSDWVLAEQ 229

Query: 61  LMHDHLQHVEAGLN-KAEVNDPLAPLRQALAPVSAVSAASVV 101
           LM  H+ HV+  L  +    DPLA LR AL+PVS  S A  V
Sbjct: 230 LMQQHIGHVQDALRLQPAAEDPLAELRNALSPVSESSKAKPV 271