BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0622.p         (204 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777612.1| transcription regulator protein [Herbaspiril...   150   2e-34
ref|YP_583982.1| GntR family transcriptional regulator [Cupriavi...   143   2e-32
ref|YP_004685408.1| GntR family transcriptional regulator [Cupri...   141   5e-32
ref|YP_726063.1| GntR family transcriptional regulator [Ralstoni...   141   5e-32
ref|YP_295642.1| GntR family transcriptional regulator [Ralstoni...   140   2e-31

>ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65704.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 84/90 (93%)

Query: 1   VVREALSRLKHEGLVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE 60
           VVREA++RLKHEG+VEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE
Sbjct: 49  VVREAIARLKHEGVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE 108

Query: 61  VAAQAAKRRTDADMAAIDAALARXDADMAA 90
           VAAQAAKRR+  D+ AI+AALA+   D+AA
Sbjct: 109 VAAQAAKRRSAEDLQAIEAALAQIGVDVAA 138


>ref|YP_583982.1| GntR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gb|ABF08713.1| transcriptional regulator, GntR-family [Cupriavidus metallidurans
           CH34]
          Length = 247

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 84/90 (93%)

Query: 1   VVREALSRLKHEGLVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE 60
           V+REA++RLK+EGLVE RQGSGVFVTEQAGI+PLRIDYT+V + E+VLQIVELRR+IEAE
Sbjct: 49  VIREAIARLKYEGLVESRQGSGVFVTEQAGIRPLRIDYTDVGTLESVLQIVELRRSIEAE 108

Query: 61  VAAQAAKRRTDADMAAIDAALARXDADMAA 90
           VAAQAA+RRTDA MA IDAALAR DA++AA
Sbjct: 109 VAAQAARRRTDATMANIDAALARIDAEVAA 138


>ref|YP_004685408.1| GntR family transcriptional regulator [Cupriavidus necator N-1]
 gb|AEI76927.1| transcriptional regulator GntR family [Cupriavidus necator N-1]
          Length = 244

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 81/89 (91%)

Query: 1   VVREALSRLKHEGLVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE 60
           VVREA+SRLK+EG+VE RQGSGVFVT QAGI+PLRIDYTE  + E+VLQIVELRRAIEAE
Sbjct: 49  VVREAISRLKYEGVVESRQGSGVFVTLQAGIRPLRIDYTETGTLESVLQIVELRRAIEAE 108

Query: 61  VAAQAAKRRTDADMAAIDAALARXDADMA 89
           VAAQAA+RRTDA MAAIDAALAR D ++A
Sbjct: 109 VAAQAARRRTDASMAAIDAALARLDEEVA 137


>ref|YP_726063.1| GntR family transcriptional regulator [Ralstonia eutropha H16]
 emb|CAJ92695.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16]
          Length = 244

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 81/89 (91%)

Query: 1   VVREALSRLKHEGLVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE 60
           VVREA+SRLK+EG+VE RQGSGVFVT QAGI+PLRIDYTE  + E+VLQIVELRRAIEAE
Sbjct: 49  VVREAISRLKYEGVVESRQGSGVFVTLQAGIRPLRIDYTETGTLESVLQIVELRRAIEAE 108

Query: 61  VAAQAAKRRTDADMAAIDAALARXDADMA 89
           VAAQAA+RRTDA MAAIDAALAR D ++A
Sbjct: 109 VAAQAARRRTDASMAAIDAALARLDEEVA 137


>ref|YP_295642.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134]
 gb|AAZ60798.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134]
          Length = 245

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 81/89 (91%)

Query: 1   VVREALSRLKHEGLVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE 60
           V+REA+SRLK+EG+VE RQGSGVFVTEQAGI+PLRIDYT+  + ++VLQIVELRRAIEAE
Sbjct: 49  VIREAISRLKYEGVVESRQGSGVFVTEQAGIRPLRIDYTDTGTLDSVLQIVELRRAIEAE 108

Query: 61  VAAQAAKRRTDADMAAIDAALARXDADMA 89
           VAAQAA+RRTDA M AID ALAR DA++A
Sbjct: 109 VAAQAARRRTDATMTAIDTALARLDAEVA 137