BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0616.p (188 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774819.1| 16S rRNA uridine-516 pseudouridylate synthas... 298 2e-79 ref|YP_001354207.1| pseudouridylate synthase family protein [Jan... 285 3e-75 ref|YP_001100699.1| putative pseudouridylate synthase [Herminiim... 281 5e-74 ref|YP_004753916.1| putative Pseudouridylate synthase [Collimona... 263 9e-69 ref|ZP_08275183.1| putative Pseudouridylate synthase [Oxalobacte... 261 2e-68 >ref|YP_003774819.1| 16S rRNA uridine-516 pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ62911.1| 16S rRNA uridine-516 pseudouridylate synthase protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/188 (72%), Positives = 162/188 (86%) Query: 1 MPLILFNKPYQVMCQFSAQDDRETLADYLDIPDIYPAGRLDADSEGLMLLTDDGELQHAI 60 MPLIL NKP+QVM QFSA +R+TLADY+DIP++YPAGRLDADSEGL+LLTDDG+LQHAI Sbjct: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 Query: 61 SHPKRKQPKVYLVQVEGTPDANSLERLRNPLDLGDFVTRKSEVRHVQEPAWLWPRNPPIR 120 +HP+RK PK YL QVEG P +L++LR PLDLGDFVT+ S+ R +QEP W+WPRNPPIR Sbjct: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIQEPGWMWPRNPPIR 120 Query: 121 ERKNHPTSWLTIQISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFALATDPLLPGEWKTVD 180 +R+N PTSW+ + ISEGKNRQVRRMTAAVGLPTLRLVRIAIGPF+LAT P++PGEW+ VD Sbjct: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 Query: 181 PQEFHRDN 188 P E R Sbjct: 181 PLELERQG 188 >ref|YP_001354207.1| pseudouridylate synthase family protein [Janthinobacterium sp. Marseille] gb|ABR89276.1| pseudouridylate synthase family protein [Janthinobacterium sp. Marseille] Length = 211 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/184 (72%), Positives = 152/184 (82%) Query: 1 MPLILFNKPYQVMCQFSAQDDRETLADYLDIPDIYPAGRLDADSEGLMLLTDDGELQHAI 60 MPLILFNKP+Q MCQFS R++LAD++DIP+IYPAGRLDADSEGL+LL DDG+LQHAI Sbjct: 25 MPLILFNKPFQTMCQFSPHPTRKSLADHIDIPNIYPAGRLDADSEGLLLLNDDGKLQHAI 84 Query: 61 SHPKRKQPKVYLVQVEGTPDANSLERLRNPLDLGDFVTRKSEVRHVQEPAWLWPRNPPIR 120 SHP RK K YLVQVEG PDA++L RLR PLDLGDFVT++ EV+ V EP WLWPRNPPIR Sbjct: 85 SHPDRKHTKTYLVQVEGVPDADALARLRAPLDLGDFVTQECEVKRVAEPDWLWPRNPPIR 144 Query: 121 ERKNHPTSWLTIQISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFALATDPLLPGEWKTVD 180 ER N PTSWL I +SEGKNRQVRRMT AVG PTLRLVRIAIGP +L + PL PGEW+ + Sbjct: 145 ERANAPTSWLAITLSEGKNRQVRRMTGAVGYPTLRLVRIAIGPVSLQSHPLWPGEWREIS 204 Query: 181 PQEF 184 E Sbjct: 205 VAEL 208 >ref|YP_001100699.1| putative pseudouridylate synthase [Herminiimonas arsenicoxydans] emb|CAL62578.1| Ribosomal large subunit pseudouridine synthase E (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) [Herminiimonas arsenicoxydans] Length = 186 Score = 281 bits (718), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 133/184 (72%), Positives = 149/184 (80%) Query: 1 MPLILFNKPYQVMCQFSAQDDRETLADYLDIPDIYPAGRLDADSEGLMLLTDDGELQHAI 60 M LILFNKP+QVMCQFS R +LADYLDIPDIYPAGRLDADSEGL+LLTDDG+LQHAI Sbjct: 1 MSLILFNKPFQVMCQFSPHPTRASLADYLDIPDIYPAGRLDADSEGLLLLTDDGKLQHAI 60 Query: 61 SHPKRKQPKVYLVQVEGTPDANSLERLRNPLDLGDFVTRKSEVRHVQEPAWLWPRNPPIR 120 SHP KQ K YL QVEG P +L RLR PL+LGDF+T+ EV+ VQEP WLWPRNPPIR Sbjct: 61 SHPDHKQTKTYLAQVEGIPHTEALARLRAPLNLGDFITQGCEVKRVQEPDWLWPRNPPIR 120 Query: 121 ERKNHPTSWLTIQISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFALATDPLLPGEWKTVD 180 ER PTSWL I ++EGKNRQVRRMT AVGLPTLRL+RIAIGP +L + PLLPG+W+ V Sbjct: 121 ERAQVPTSWLAITLAEGKNRQVRRMTGAVGLPTLRLIRIAIGPISLQSHPLLPGQWREVS 180 Query: 181 PQEF 184 E Sbjct: 181 AAEL 184 >ref|YP_004753916.1| putative Pseudouridylate synthase [Collimonas fungivorans Ter331] gb|AEK63093.1| putative Pseudouridylate synthase [Collimonas fungivorans Ter331] Length = 197 Score = 263 bits (672), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 124/184 (67%), Positives = 148/184 (80%) Query: 1 MPLILFNKPYQVMCQFSAQDDRETLADYLDIPDIYPAGRLDADSEGLMLLTDDGELQHAI 60 M LILFNKP+QVMCQFSA R TLADY+ IPDIYPAGRLDADSEGL+LLTDDG+LQH I Sbjct: 9 MSLILFNKPFQVMCQFSAHPGRPTLADYIKIPDIYPAGRLDADSEGLLLLTDDGQLQHNI 68 Query: 61 SHPKRKQPKVYLVQVEGTPDANSLERLRNPLDLGDFVTRKSEVRHVQEPAWLWPRNPPIR 120 SHP KQPK Y+ QVEG P LERLR+ +DLGDF ++ + R ++EP WLWPR+PPIR Sbjct: 69 SHPAVKQPKTYMAQVEGVPTEVLLERLRHGVDLGDFRSKPCQARQIEEPDWLWPRDPPIR 128 Query: 121 ERKNHPTSWLTIQISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFALATDPLLPGEWKTVD 180 +R++ PTSWL + ++EGKNRQVRRMTAAVGLPTLRLVR+AIG +L + PL PGE +D Sbjct: 129 QRQDKPTSWLALTLTEGKNRQVRRMTAAVGLPTLRLVRVAIGQVSLQSHPLWPGESLAID 188 Query: 181 PQEF 184 P + Sbjct: 189 PADL 192 >ref|ZP_08275183.1| putative Pseudouridylate synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31346.1| putative Pseudouridylate synthase [Oxalobacteraceae bacterium IMCC9480] Length = 189 Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 127/184 (69%), Positives = 144/184 (78%) Query: 1 MPLILFNKPYQVMCQFSAQDDRETLADYLDIPDIYPAGRLDADSEGLMLLTDDGELQHAI 60 M LILFNKPY V+CQFS Q R TLAD+L IPDIYPAGRLDADSEGLMLLTDDG LQH I Sbjct: 1 MALILFNKPYLVLCQFSPQAGRRTLADHLAIPDIYPAGRLDADSEGLMLLTDDGRLQHDI 60 Query: 61 SHPKRKQPKVYLVQVEGTPDANSLERLRNPLDLGDFVTRKSEVRHVQEPAWLWPRNPPIR 120 S P KQPK YLVQ+EG PD +L LR + LGDF ++ ++V V PAWLWPRNPPIR Sbjct: 61 SDPTHKQPKAYLVQIEGIPDPVALNTLRTGVFLGDFTSKAAKVIEVATPAWLWPRNPPIR 120 Query: 121 ERKNHPTSWLTIQISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFALATDPLLPGEWKTVD 180 +R PT WL + I+EGKNRQVRRMTAAVGLPTLRLVR+AIGP++L + PLLPGE + VD Sbjct: 121 QRAVTPTRWLLLTITEGKNRQVRRMTAAVGLPTLRLVRVAIGPYSLESHPLLPGESRVVD 180 Query: 181 PQEF 184 E Sbjct: 181 AAEL 184