BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0614.p         (181 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774818.1| signal peptide protein [Herbaspirillum serop...   221   4e-56
ref|YP_001354208.1| hypothetical protein mma_2518 [Janthinobacte...   205   2e-51
ref|YP_004753918.1| exported protein [Collimonas fungivorans Ter...   204   4e-51
emb|CAL62579.2| Conserved hypothetical protein [Herminiimonas ar...   201   4e-50
ref|YP_001100700.1| hypothetical protein HEAR2450 [Herminiimonas...   200   6e-50

>ref|YP_003774818.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62910.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  221 bits (563), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 125/153 (81%), Gaps = 3/153 (1%)

Query: 30  HPIMRRF-RPLVTLLATLATVAAALPGQAQQLQKFPTTTLNAGLYLIKAEVASTEAQREQ 88
           HP+ R F R   TLLA LA  ++A   Q  Q++KFPTT LN G++LIKAEVA TEA+REQ
Sbjct: 4   HPLSRFFVRSAATLLA-LACFSSA-QAQTPQVRKFPTTQLNIGIHLIKAEVAKTEAEREQ 61

Query: 89  GLMFRDKMGANDGMVFAFGAPAGVCMWMKNTLIPLSVAFMDESGKIINIEEMKEQTLDSH 148
           GLMFR+KMG N+GM+F F  PAGVCMWMKNTLIPLSVAFMDE G IINIE+MK QTLDSH
Sbjct: 62  GLMFREKMGDNEGMLFLFEQPAGVCMWMKNTLIPLSVAFMDEKGVIINIEDMKAQTLDSH 121

Query: 149 CAAKPATYALEMNKGWFKQKNIKPGTVIEGLPR 181
           CA + A YALEMNKGWFKQKNI+PG+ IEGLPR
Sbjct: 122 CAKRAAVYALEMNKGWFKQKNIQPGSQIEGLPR 154


>ref|YP_001354208.1| hypothetical protein mma_2518 [Janthinobacterium sp. Marseille]
 gb|ABR90185.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 151

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 115/149 (77%)

Query: 33  MRRFRPLVTLLATLATVAAALPGQAQQLQKFPTTTLNAGLYLIKAEVASTEAQREQGLMF 92
           M +F         LA+  +A    AQQ +KFP  +L AG+ +IKAEV + EA+R+QGLMF
Sbjct: 1   MNKFLSTCVATIALASTLSAGSSYAQQDKKFPVISLTAGMNIIKAEVVANEAERQQGLMF 60

Query: 93  RDKMGANDGMVFAFGAPAGVCMWMKNTLIPLSVAFMDESGKIINIEEMKEQTLDSHCAAK 152
           R  MG N+GMVF FGAPAGVCMWMKNTLIPLSVAF+D  GKI+NIE+MK Q+LDSHC+ +
Sbjct: 61  RPSMGQNEGMVFLFGAPAGVCMWMKNTLIPLSVAFIDADGKIVNIEDMKPQSLDSHCSKR 120

Query: 153 PATYALEMNKGWFKQKNIKPGTVIEGLPR 181
           P  YALEMN+GWFK KN+KPG++IEGLP+
Sbjct: 121 PVPYALEMNEGWFKHKNLKPGSIIEGLPK 149


>ref|YP_004753918.1| exported protein [Collimonas fungivorans Ter331]
 gb|AEK63095.1| exported protein [Collimonas fungivorans Ter331]
          Length = 153

 Score =  204 bits (519), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/125 (73%), Positives = 107/125 (85%)

Query: 57  AQQLQKFPTTTLNAGLYLIKAEVASTEAQREQGLMFRDKMGANDGMVFAFGAPAGVCMWM 116
           AQ++Q+ P T LN G+++IKAEVA +E QREQGLMFR KMGAN+GMVF F  PAG+CMWM
Sbjct: 28  AQEIQQLPVTPLNIGIHVIKAEVARSEDQREQGLMFRKKMGANEGMVFVFETPAGICMWM 87

Query: 117 KNTLIPLSVAFMDESGKIINIEEMKEQTLDSHCAAKPATYALEMNKGWFKQKNIKPGTVI 176
           KNTLIPLSVAF+D  G I+N+EEMK QTLDSHCA   A+YALEMNKGWFK KNIKPGTVI
Sbjct: 88  KNTLIPLSVAFIDAKGAILNVEEMKAQTLDSHCAQGAASYALEMNKGWFKDKNIKPGTVI 147

Query: 177 EGLPR 181
           +GLP+
Sbjct: 148 QGLPQ 152


>emb|CAL62579.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 171

 Score =  201 bits (511), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 107/128 (83%)

Query: 54  PGQAQQLQKFPTTTLNAGLYLIKAEVASTEAQREQGLMFRDKMGANDGMVFAFGAPAGVC 113
           P  AQ  QKFP   L AG+++IKAEV +TEA+R+QGLMFR+ M  N+GMVF FGAPAGVC
Sbjct: 42  PASAQPGQKFPVIPLTAGMHVIKAEVVATEAERQQGLMFRESMAQNEGMVFLFGAPAGVC 101

Query: 114 MWMKNTLIPLSVAFMDESGKIINIEEMKEQTLDSHCAAKPATYALEMNKGWFKQKNIKPG 173
           MWMKNTLIPLSVAF+D+ GKI+NIE MK  +L+SHC+ KP  YALEMN+GWFKQKNIKPG
Sbjct: 102 MWMKNTLIPLSVAFIDDDGKIVNIENMKPHSLESHCSKKPVRYALEMNEGWFKQKNIKPG 161

Query: 174 TVIEGLPR 181
           + I+GLP+
Sbjct: 162 STIDGLPK 169


>ref|YP_001100700.1| hypothetical protein HEAR2450 [Herminiimonas arsenicoxydans]
          Length = 151

 Score =  200 bits (509), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 107/128 (83%)

Query: 54  PGQAQQLQKFPTTTLNAGLYLIKAEVASTEAQREQGLMFRDKMGANDGMVFAFGAPAGVC 113
           P  AQ  QKFP   L AG+++IKAEV +TEA+R+QGLMFR+ M  N+GMVF FGAPAGVC
Sbjct: 22  PASAQPGQKFPVIPLTAGMHVIKAEVVATEAERQQGLMFRESMAQNEGMVFLFGAPAGVC 81

Query: 114 MWMKNTLIPLSVAFMDESGKIINIEEMKEQTLDSHCAAKPATYALEMNKGWFKQKNIKPG 173
           MWMKNTLIPLSVAF+D+ GKI+NIE MK  +L+SHC+ KP  YALEMN+GWFKQKNIKPG
Sbjct: 82  MWMKNTLIPLSVAFIDDDGKIVNIENMKPHSLESHCSKKPVRYALEMNEGWFKQKNIKPG 141

Query: 174 TVIEGLPR 181
           + I+GLP+
Sbjct: 142 STIDGLPK 149