BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0611.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774815.1| hypothetical protein Hsero_1391 [Herbaspiril... 362 3e-98 ref|YP_001354211.1| hypothetical protein mma_2521 [Janthinobacte... 343 1e-92 ref|YP_001100703.1| hypothetical protein HEAR2453 [Herminiimonas... 338 6e-91 ref|ZP_08273667.1| Protein sirB1 [Oxalobacteraceae bacterium IMC... 288 5e-76 ref|YP_585048.1| hypothetical protein Rmet_2906 [Cupriavidus met... 278 6e-73 >ref|YP_003774815.1| hypothetical protein Hsero_1391 [Herbaspirillum seropedicae SmR1] gb|ADJ62907.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 285 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 187/232 (80%), Positives = 211/232 (90%), Gaps = 3/232 (1%) Query: 1 MTLTPLEYFSSLVRQDDSIPLFESALALGQDAHPDLDLSACQIEMDTLALKLKQRLSPDA 60 MTLT L+YF+SLVRQDDSIPLFESAL LGQD +P++D + ++ +DTLA KLKQRL DA Sbjct: 4 MTLTSLDYFASLVRQDDSIPLFESALTLGQDFYPEMDFAEEEMALDTLAAKLKQRLPSDA 63 Query: 61 SHIQKLRMLNHFFFQELAFAGNINNYYDPDNSYIHRVLTSRRGIPISLAVVYMELGQQIG 120 S IQKLRMLNHFFFQE+AFAGN+NNYYDPDNSYIHRVL++RRGIPISLAVVY+EL Q IG Sbjct: 64 SQIQKLRMLNHFFFQEMAFAGNVNNYYDPDNSYIHRVLSTRRGIPISLAVVYIELAQHIG 123 Query: 121 LNMKGISFPGHFLMKLSVQSGDIVLDPMNGASLSREELEERLEPYLEQQ---EYGDELPL 177 L+MKG+SFPGHFLMKLSVQSG+IVLDPMNGASLSREELEERLEP+L Q E+GDELPL Sbjct: 124 LDMKGVSFPGHFLMKLSVQSGEIVLDPMNGASLSREELEERLEPFLTHQPDEEFGDELPL 183 Query: 178 AAYLRAAHPREILTRMLRNLKAIYTDSQRWQGVLEVQERLVILLPDEITERR 229 AAYLRAAHPREIL RMLRNLKAI+ +SQRWQ VL+VQERLVILLP+EITE+R Sbjct: 184 AAYLRAAHPREILARMLRNLKAIFMESQRWQQVLDVQERLVILLPEEITEKR 235 >ref|YP_001354211.1| hypothetical protein mma_2521 [Janthinobacterium sp. Marseille] gb|ABR89275.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 279 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 161/229 (70%), Positives = 198/229 (86%) Query: 1 MTLTPLEYFSSLVRQDDSIPLFESALALGQDAHPDLDLSACQIEMDTLALKLKQRLSPDA 60 MT+ LEYFS+LV+QDDSIPLFE+ALA+ QDA P+LDL+A Q E+DTLA+KLKQRL DA Sbjct: 1 MTIQSLEYFSTLVQQDDSIPLFEAALAIAQDAEPNLDLAASQAEVDTLAVKLKQRLPDDA 60 Query: 61 SHIQKLRMLNHFFFQELAFAGNINNYYDPDNSYIHRVLTSRRGIPISLAVVYMELGQQIG 120 S +QKLRMLNH+F+ EL F+GN+N+YY+P+NSY+HRV+ +RRGIPISLAV+YMEL QQI Sbjct: 61 STLQKLRMLNHYFYNELGFSGNVNDYYNPENSYLHRVIDTRRGIPISLAVLYMELAQQID 120 Query: 121 LNMKGISFPGHFLMKLSVQSGDIVLDPMNGASLSREELEERLEPYLEQQEYGDELPLAAY 180 L+++GISFPGHFLMKLSVQSG +VLDP NGASLSREELEER+EPY+ +Q++ D+ L AY Sbjct: 121 LDVQGISFPGHFLMKLSVQSGQVVLDPFNGASLSREELEERVEPYIMEQDFPDDFQLTAY 180 Query: 181 LRAAHPREILTRMLRNLKAIYTDSQRWQGVLEVQERLVILLPDEITERR 229 L AA PR+IL RMLRNLK ++ +RWQ +LEVQERL+ILLP EI ERR Sbjct: 181 LDAASPRDILVRMLRNLKTLFMQQERWQRLLEVQERLLILLPHEIAERR 229 >ref|YP_001100703.1| hypothetical protein HEAR2453 [Herminiimonas arsenicoxydans] emb|CAL62582.1| Conserved hypothetical protein; putative TPR domain [Herminiimonas arsenicoxydans] Length = 279 Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 158/229 (68%), Positives = 196/229 (85%) Query: 1 MTLTPLEYFSSLVRQDDSIPLFESALALGQDAHPDLDLSACQIEMDTLALKLKQRLSPDA 60 MT+ LEYFS+LV+QDDSIPLFE+ALA+ QDA P LDL+A + E+DTLA KLKQRL DA Sbjct: 1 MTIKTLEYFSTLVQQDDSIPLFEAALAIAQDAEPGLDLAALEEEVDTLAAKLKQRLPDDA 60 Query: 61 SHIQKLRMLNHFFFQELAFAGNINNYYDPDNSYIHRVLTSRRGIPISLAVVYMELGQQIG 120 SH+QKLRMLNH+F+ EL F+GN+N+YY+PDNSY+HRVL++RRGIPISLA++YMEL QQI Sbjct: 61 SHLQKLRMLNHYFYNELGFSGNVNDYYNPDNSYLHRVLSTRRGIPISLAILYMELAQQID 120 Query: 121 LNMKGISFPGHFLMKLSVQSGDIVLDPMNGASLSREELEERLEPYLEQQEYGDELPLAAY 180 L ++G+SFPGHFLMKLSVQSG +VLDP NG+SLSREELEER+EPY+ +Q++ D+ AY Sbjct: 121 LEVQGVSFPGHFLMKLSVQSGQVVLDPFNGSSLSREELEERVEPYILEQDFPDDFQFNAY 180 Query: 181 LRAAHPREILTRMLRNLKAIYTDSQRWQGVLEVQERLVILLPDEITERR 229 L AA PR+IL RMLRNLK ++ + WQ +LEVQERL+ILLP +ITERR Sbjct: 181 LDAASPRDILVRMLRNLKLLFMQQEHWQRLLEVQERLLILLPRDITERR 229 >ref|ZP_08273667.1| Protein sirB1 [Oxalobacteraceae bacterium IMCC9480] gb|EGF32858.1| Protein sirB1 [Oxalobacteraceae bacterium IMCC9480] Length = 277 Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 155/275 (56%), Positives = 199/275 (72%), Gaps = 18/275 (6%) Query: 3 LTPLEYFSSLVRQDDSIPLFESALALGQDAHPDLDLSACQIEMDTLALKLKQRLSPDASH 62 +TPL+YF+SLV+QDDSIPLFE+AL L QD P D++ Q+E+D +A KL QR+ PD +H Sbjct: 2 ITPLDYFASLVQQDDSIPLFEAALTLAQDTDPQFDIAGAQVEVDRMAAKLLQRIPPDTAH 61 Query: 63 IQKLRMLNHFFFQELAFAGNINNYYDPDNSYIHRVLTSRRGIPISLAVVYMELGQQIGLN 122 + KLR+LN +F+ EL F GNINNYYDPDNSY+HRV +RRGIPISLA++YME+ QQIGL+ Sbjct: 62 VPKLRLLNQYFYAELGFGGNINNYYDPDNSYLHRVARTRRGIPISLAMIYMEIAQQIGLD 121 Query: 123 MKGISFPGHFLMKLSVQSGDIVLDPMNGASLSREELEERLEPYLEQQEYGDELPLAAYLR 182 ++GISFPGHFLMKLS Q+G+I+LDP+NG+SLSREELEERLEP+ +Q + PLA YL Sbjct: 122 VRGISFPGHFLMKLSTQAGEIILDPVNGSSLSREELEERLEPFADQIRQAGK-PLATYLE 180 Query: 183 AAHPREILTRMLRNLKAIYTDSQRWQGVLEVQERLVILLPDEITER--------RXSCRG 234 A R+ILTRMLRNLK+++ + RWQ +L+VQ+RL+ILLP ++ ER R C Sbjct: 181 PASARDILTRMLRNLKSLFFEYDRWQSLLDVQQRLLILLPGDVAERRDRGLAYARLDCPS 240 Query: 235 GKSSRQSAGGAGRP---------GGLPGLASRCRR 260 A A RP G LP L + RR Sbjct: 241 PALDDIEAYLAARPDAADANVLRGQLPSLRAAIRR 275 >ref|YP_585048.1| hypothetical protein Rmet_2906 [Cupriavidus metallidurans CH34] gb|ABF09779.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 282 Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 131/226 (57%), Positives = 178/226 (78%), Gaps = 2/226 (0%) Query: 6 LEYFSSLVRQDDSIPLFESALALGQDAHPDLDLSACQIEMDTLALKLKQRLSPDASHIQK 65 L+YF+SLV DD+IPL E+ALA+ QDA+PDLDL A +D LAL+LK+R++ + IQ+ Sbjct: 7 LDYFASLVADDDAIPLTETALAIAQDAYPDLDLQAELAALDVLALRLKRRIAEGTAAIQR 66 Query: 66 LRMLNHFFFQELAFAGNINNYYDPDNSYIHRVLTSRRGIPISLAVVYMELGQQIGLNMKG 125 LR+LNHFF+++L F N N+YYDPDNSY++ VL RRGIPISLA++YMELGQQIGL +KG Sbjct: 67 LRLLNHFFYRDLGFGPNANDYYDPDNSYLNMVLKQRRGIPISLAILYMELGQQIGLPLKG 126 Query: 126 ISFPGHFLMKLSVQSGDIVLDPMNGASLSREELEERLEPYLEQQEYGD--ELPLAAYLRA 183 ++FP HFL+++++ +G++VLDP+ G +LS+E+L+E L+PYLE++ + E+PL +L+ Sbjct: 127 VAFPSHFLVRMTIPAGEVVLDPLTGETLSKEQLQEMLDPYLEREGITNSSEVPLGLFLQT 186 Query: 184 AHPREILTRMLRNLKAIYTDSQRWQGVLEVQERLVILLPDEITERR 229 A REI+ RMLRNLKAIY RWQ +L VQ RLVILLPD I E R Sbjct: 187 ASHREIIARMLRNLKAIYLQESRWQRLLAVQNRLVILLPDSIEEVR 232