BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0604.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754064.1| putative diheme cytochrome c-553 [Collimonas... 461 e-128 ref|YP_001354762.1| cytochrome c [Janthinobacterium sp. Marseill... 421 e-115 ref|YP_001101061.1| putative cytochrome C [Herminiimonas arsenic... 411 e-113 ref|YP_002912800.1| putative periplasmic cytochrome c containing... 407 e-111 ref|YP_001896924.1| gluconate 2-dehydrogenase [Burkholderia phyt... 406 e-111 >ref|YP_004754064.1| putative diheme cytochrome c-553 [Collimonas fungivorans Ter331] gb|AEK63241.1| Putative diheme cytochrome c-553 [Collimonas fungivorans Ter331] Length = 431 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/324 (67%), Positives = 260/324 (80%), Gaps = 3/324 (0%) Query: 1 LHHGKSKDGSFLYPAFPYTNYTKVTREDSNALFAYMQTVTPVRQPSQEHALRFPYNNRIL 60 LH+GKSKDGS LYPAFPYTNYTKVTR D++A+FAY+++V V+Q +++ LRFPYNNR L Sbjct: 110 LHNGKSKDGSLLYPAFPYTNYTKVTRSDADAMFAYLRSVPAVQQKNRQSDLRFPYNNRFL 169 Query: 61 LAGWRALYFTPGAYRADSKQSVEWNRGAYLVQGLGHCSACHTTRNAFGATVAKSDLGGGL 120 L GWRALYF PG Y+ +++QSVEWNRGAYLVQGLGHCSACHTTRNA G T K+DLGGG Sbjct: 170 LYGWRALYFRPGTYQDETRQSVEWNRGAYLVQGLGHCSACHTTRNALGGTDLKADLGGGF 229 Query: 121 IPIMNWYAPSLTSDAEAGLGNWELQHITALLKTGVSPRSTVFGPMAEVVSRSLQHLNDSD 180 IP++NWYAPSLTSD E GLGNW+++HIT LLK GVSPR TV GPMAEVV SLQHL+D D Sbjct: 230 IPVVNWYAPSLTSDQEIGLGNWDIEHITGLLKNGVSPRGTVLGPMAEVVGASLQHLSDQD 289 Query: 181 IQAMAVYLKSLP-QNDPPPAFDTPQPDKATADRVMQAGAKIYEQHCAECHKAGGQGIAPA 239 ++AMAVYLKSLP Q + + PD+ RVM+ G KIY+ HC +CH+A G+G PA Sbjct: 290 VRAMAVYLKSLPRQKEASEPKERASPDEVA--RVMELGQKIYKNHCIDCHQASGKGQWPA 347 Query: 240 YPPMNGNRALTMGSAVNPIRMVLNGGFPPSTQGNPRPYGMPPFGQLLNDQEVAAVVSYIR 299 YPP+ N A+TM + VN IR+VLNGGF PST NPRPYGMPP+G L+D EVAAVVSYIR Sbjct: 348 YPPLASNHAITMPAPVNAIRVVLNGGFAPSTAANPRPYGMPPYGPALSDSEVAAVVSYIR 407 Query: 300 NSWDNRAGFVSPQEVNRYRSIPLD 323 NSW N+A VS EVNRYR++PL+ Sbjct: 408 NSWGNKAPIVSAAEVNRYRAVPLE 431 >ref|YP_001354762.1| cytochrome c [Janthinobacterium sp. Marseille] gb|ABR90805.1| cytochrome c [Janthinobacterium sp. Marseille] Length = 428 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 197/319 (61%), Positives = 240/319 (75%) Query: 1 LHHGKSKDGSFLYPAFPYTNYTKVTREDSNALFAYMQTVTPVRQPSQEHALRFPYNNRIL 60 +H GKSKDGS LYPAFPYTNYTKVTR DS+A+FAY+QT+ V Q ++ LRFPY+NR+ Sbjct: 109 MHDGKSKDGSLLYPAFPYTNYTKVTRADSDAIFAYLQTLPAVSQQNRAPDLRFPYDNRVA 168 Query: 61 LAGWRALYFTPGAYRADSKQSVEWNRGAYLVQGLGHCSACHTTRNAFGATVAKSDLGGGL 120 L WRALYF PG Y D KQSVEWNRGAYL QGLGHCSACH+ R+A G T K++LGGG+ Sbjct: 169 LYVWRALYFRPGQYANDDKQSVEWNRGAYLAQGLGHCSACHSPRDALGGTDLKAELGGGM 228 Query: 121 IPIMNWYAPSLTSDAEAGLGNWELQHITALLKTGVSPRSTVFGPMAEVVSRSLQHLNDSD 180 IP++NWYAP L DA+ LGNWE +H+ AL+KTG +P +V GPMAEVV SLQ+ D D Sbjct: 229 IPVLNWYAPPLNGDAQTSLGNWETEHLAALMKTGTAPSRSVSGPMAEVVFGSLQYAKDED 288 Query: 181 IQAMAVYLKSLPQNDPPPAFDTPQPDKATADRVMQAGAKIYEQHCAECHKAGGQGIAPAY 240 I+AMA+YLKSLPQ P P T +++AGAK+YE CA CH+ G+G+A Y Sbjct: 289 IKAMALYLKSLPQQIPAPVAAAESVPDETKKNMIKAGAKLYENQCASCHQESGKGVAAIY 348 Query: 241 PPMNGNRALTMGSAVNPIRMVLNGGFPPSTQGNPRPYGMPPFGQLLNDQEVAAVVSYIRN 300 P + G+RA+T A N IRMVL+GG+ PST GNPRPYGMPPFG + D+EVA+VV+YIRN Sbjct: 349 PALAGSRAITTPVATNAIRMVLHGGYAPSTAGNPRPYGMPPFGHSMTDEEVASVVTYIRN 408 Query: 301 SWDNRAGFVSPQEVNRYRS 319 SW N+A VSP +VNRYRS Sbjct: 409 SWGNQATAVSPNDVNRYRS 427 >ref|YP_001101061.1| putative cytochrome C [Herminiimonas arsenicoxydans] emb|CAL62940.1| Cytochrome c, class I precursor [Herminiimonas arsenicoxydans] Length = 429 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/319 (59%), Positives = 238/319 (74%) Query: 1 LHHGKSKDGSFLYPAFPYTNYTKVTREDSNALFAYMQTVTPVRQPSQEHALRFPYNNRIL 60 +H GKSKDGS LYPAFPYTNYT+VTR DS+A+FAY+QT+ V++ + LRFPY+NR L Sbjct: 109 MHDGKSKDGSLLYPAFPYTNYTRVTRADSDAIFAYLQTLPTVQKKNIAPELRFPYDNRAL 168 Query: 61 LAGWRALYFTPGAYRADSKQSVEWNRGAYLVQGLGHCSACHTTRNAFGATVAKSDLGGGL 120 L WRALYF PG Y D KQSVEWNRGAYL QGLGHCSACH+ R++FG T KS+LGGG+ Sbjct: 169 LYVWRALYFRPGQYTNDDKQSVEWNRGAYLAQGLGHCSACHSPRDSFGGTDVKSELGGGM 228 Query: 121 IPIMNWYAPSLTSDAEAGLGNWELQHITALLKTGVSPRSTVFGPMAEVVSRSLQHLNDSD 180 IP++NWYAP L D E LGNWE++H+ AL+KTGV+P+ +V GPMAEVV+ SLQH++ D Sbjct: 229 IPVLNWYAPPLNGDRETSLGNWEVEHLAALMKTGVAPQRSVSGPMAEVVAGSLQHMHKDD 288 Query: 181 IQAMAVYLKSLPQNDPPPAFDTPQPDKATADRVMQAGAKIYEQHCAECHKAGGQGIAPAY 240 A+A YLKSLPQ P + + ++ AGAK+YE C CH+A G+G+ Y Sbjct: 289 AHALAGYLKSLPQQSAAPLVAAETMREESKQAMIDAGAKLYEDQCISCHQASGKGVPSIY 348 Query: 241 PPMNGNRALTMGSAVNPIRMVLNGGFPPSTQGNPRPYGMPPFGQLLNDQEVAAVVSYIRN 300 P + G+RA+T A N IRMVL GG+ PST GNPRPYGMPPFGQ + D+EVAAVV+YIRN Sbjct: 349 PALAGSRAITTPVATNAIRMVLYGGYAPSTGGNPRPYGMPPFGQSMTDEEVAAVVTYIRN 408 Query: 301 SWDNRAGFVSPQEVNRYRS 319 +W N+ + P +VNRYRS Sbjct: 409 AWGNQGTAILPNDVNRYRS 427 >ref|YP_002912800.1| putative periplasmic cytochrome c containing protein [Burkholderia glumae BGR1] gb|ACR30096.1| Putative periplasmic cytochrome c containing protein [Burkholderia glumae BGR1] Length = 434 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/323 (58%), Positives = 242/323 (74%) Query: 1 LHHGKSKDGSFLYPAFPYTNYTKVTREDSNALFAYMQTVTPVRQPSQEHALRFPYNNRIL 60 +H G+SKDGS LYP FP+T+YTKV+R DS+A++AY+++V PV QP++ H LRFP+NNR L Sbjct: 112 MHTGRSKDGSLLYPGFPFTSYTKVSRADSDAIYAYLRSVAPVNQPNRPHELRFPFNNRNL 171 Query: 61 LAGWRALYFTPGAYRADSKQSVEWNRGAYLVQGLGHCSACHTTRNAFGATVAKSDLGGGL 120 L GWR L+F G +R D +SVEWNRGAYLV+GLGHCS CHT+ N GA V+ S GGL Sbjct: 172 LIGWRTLFFKEGEFRPDPTKSVEWNRGAYLVEGLGHCSMCHTSINLMGAPVSSSAFAGGL 231 Query: 121 IPIMNWYAPSLTSDAEAGLGNWELQHITALLKTGVSPRSTVFGPMAEVVSRSLQHLNDSD 180 IP+ NWYAPSLT+D E GLG+W +Q + LL+ GVS R VFGPMA+VV SLQ++ D D Sbjct: 232 IPLQNWYAPSLTNDTEFGLGDWHVQELADLLQAGVSNRGAVFGPMADVVHNSLQYMTDDD 291 Query: 181 IQAMAVYLKSLPQNDPPPAFDTPQPDKATADRVMQAGAKIYEQHCAECHKAGGQGIAPAY 240 +AM++YLKS+PQ P+ + + +++++ G K+Y +CA CH A GQG PAY Sbjct: 292 TRAMSIYLKSIPQKGEAPSHLQYETSQQFGNQLLEQGRKLYADNCATCHGASGQGKPPAY 351 Query: 241 PPMNGNRALTMGSAVNPIRMVLNGGFPPSTQGNPRPYGMPPFGQLLNDQEVAAVVSYIRN 300 PP+ N ++ M SAVNPIRMVLNGG+PPST NPRPYGMPPF Q L++QEVAAVVSYIR+ Sbjct: 352 PPLAQNHSIMMESAVNPIRMVLNGGYPPSTFRNPRPYGMPPFAQALSNQEVAAVVSYIRS 411 Query: 301 SWDNRAGFVSPQEVNRYRSIPLD 323 +W N +SPQ+V+ RS PLD Sbjct: 412 AWGNNGSPISPQQVSDLRSAPLD 434 >ref|YP_001896924.1| gluconate 2-dehydrogenase [Burkholderia phytofirmans PsJN] gb|ACD17700.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia phytofirmans PsJN] Length = 432 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/323 (58%), Positives = 239/323 (73%) Query: 1 LHHGKSKDGSFLYPAFPYTNYTKVTREDSNALFAYMQTVTPVRQPSQEHALRFPYNNRIL 60 +H G+SKDGS LYP FP+T+YTKVTR DS+A++AY+++VTPV PS+ H L+FP+N R + Sbjct: 110 MHTGRSKDGSLLYPGFPFTSYTKVTRADSDAIYAYLRSVTPVNVPSRPHELKFPFNQRNM 169 Query: 61 LAGWRALYFTPGAYRADSKQSVEWNRGAYLVQGLGHCSACHTTRNAFGATVAKSDLGGGL 120 L GWR L+F G Y+ D +SVEWNRGAYL++GLGHC CHT+ NA G V+ + GGL Sbjct: 170 LIGWRTLFFREGEYKPDPTKSVEWNRGAYLIEGLGHCGMCHTSINAMGGPVSSAAFAGGL 229 Query: 121 IPIMNWYAPSLTSDAEAGLGNWELQHITALLKTGVSPRSTVFGPMAEVVSRSLQHLNDSD 180 IP+ NWYAPSLTS+ EAGLG+WE + I LLKTGVS R VFGPMAEVV SLQ+++D+D Sbjct: 230 IPLQNWYAPSLTSNKEAGLGDWETKDIADLLKTGVSNRGAVFGPMAEVVHNSLQYMSDAD 289 Query: 181 IQAMAVYLKSLPQNDPPPAFDTPQPDKATADRVMQAGAKIYEQHCAECHKAGGQGIAPAY 240 I AMA YLK++PQ P + + +++ G KIY +CA+CH G G+ PA+ Sbjct: 290 INAMATYLKTIPQKSEAPEPLQLETSEKFGGELLKQGQKIYADNCAKCHAENGLGMPPAF 349 Query: 241 PPMNGNRALTMGSAVNPIRMVLNGGFPPSTQGNPRPYGMPPFGQLLNDQEVAAVVSYIRN 300 PP+ N+++ M SAVNPIRMVLNGG+PPST NP PYGMPPF Q L++QEVAAVV+YIR Sbjct: 350 PPLANNQSIQMPSAVNPIRMVLNGGYPPSTDANPHPYGMPPFAQALSNQEVAAVVTYIRM 409 Query: 301 SWDNRAGFVSPQEVNRYRSIPLD 323 SW N VSPQ+V+ RS PLD Sbjct: 410 SWGNHGTAVSPQQVSDLRSAPLD 432