BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0599.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burk...   203   6e-51
ref|ZP_02379861.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Bu...   203   6e-51
ref|YP_003774806.1| 23S rRNA methyltransferase [Herbaspirillum s...   203   6e-51
ref|ZP_04946020.1| 23S rRNA methylase [Burkholderia dolosa AUO15...   202   1e-50
ref|ZP_02889034.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Bu...   202   2e-50

>ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           AMMD]
 sp|Q0BGJ2.1|RLME_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gb|ABI86731.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia ambifaria
           AMMD]
          Length = 220

 Score =  203 bits (517), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 96/125 (76%), Positives = 109/125 (87%), Gaps = 6/125 (4%)

Query: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPG 60
           MAK + N+NWLHDHINDPYVK+AQ+EGYRARAAYKLKEIDE++KLI+PGQVIVDLG+TPG
Sbjct: 1   MAKNRFNQNWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPG 60

Query: 61  SWSQYARNKLA------GLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEA 114
           SWSQYARNKLA          GGI GTII LD+LPM+PIADVHFIQGDFRE+D LRQLE 
Sbjct: 61  SWSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQLED 120

Query: 115 ILDGR 119
           +L+GR
Sbjct: 121 VLEGR 125


>ref|ZP_02379861.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ubonensis
           Bu]
          Length = 220

 Score =  203 bits (517), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 110/126 (87%), Gaps = 6/126 (4%)

Query: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPG 60
           MAK + N++WLHDHINDPYVK+AQ+EGYRARAAYKLKEIDE++KLI+PGQVIVDLG+ PG
Sbjct: 1   MAKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPG 60

Query: 61  SWSQYARNKLA------GLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEA 114
           SWSQYARNKLA       +  GGI GTI+ LDMLPM+PIADVHFIQGDFRE++ L QLEA
Sbjct: 61  SWSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDEVLHQLEA 120

Query: 115 ILDGRP 120
           +L+GRP
Sbjct: 121 VLEGRP 126


>ref|YP_003774806.1| 23S rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62898.1| 23S rRNA methyltransferase (Cell division protein FtsJ) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  203 bits (517), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 105/119 (88%), Positives = 112/119 (94%)

Query: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPG 60
           MAK KLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEE+LIKPGQVIVDLG TPG
Sbjct: 1   MAKNKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPG 60

Query: 61  SWSQYARNKLAGLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEAILDGR 119
           SW QY RNKLAG EGGGI GTIIGLD+LPMDPIADVH+IQGDFRE++ +RQLEA+LDGR
Sbjct: 61  SWCQYVRNKLAGAEGGGIHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEAVLDGR 119


>ref|ZP_04946020.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
 gb|EAY69191.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
          Length = 220

 Score =  202 bits (515), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 109/126 (86%), Gaps = 6/126 (4%)

Query: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPG 60
           MAK + N++WLHDHINDPYVK+AQ+EGYRARAAYKLKEIDE++KLI+PGQVIVDLG+ PG
Sbjct: 1   MAKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPG 60

Query: 61  SWSQYARNKLA------GLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEA 114
           SWSQYARNKLA       +  GGI GTI+ LDMLPM+PIADVHFIQGDFRE+D L QLE 
Sbjct: 61  SWSQYARNKLAQGKRRDAVREGGIDGTIVALDMLPMEPIADVHFIQGDFREDDVLHQLED 120

Query: 115 ILDGRP 120
           +L+GRP
Sbjct: 121 VLEGRP 126


>ref|ZP_02889034.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           IOP40-10]
 gb|EDT05362.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           IOP40-10]
          Length = 220

 Score =  202 bits (513), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 109/125 (87%), Gaps = 6/125 (4%)

Query: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPG 60
           MAK + N++WLHDHINDPYVK+AQ+EGYRARAAYKLKEIDE++KLI+PGQVIVDLG+TPG
Sbjct: 1   MAKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPG 60

Query: 61  SWSQYARNKLA------GLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEA 114
           SWSQYARNKLA          GGI GTII LD+LPM+PIADVHFIQGDFRE+D LRQLE 
Sbjct: 61  SWSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPIADVHFIQGDFREDDVLRQLEE 120

Query: 115 ILDGR 119
           +L+GR
Sbjct: 121 VLEGR 125