BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0598.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001099473.1| hypothetical protein HEAR1168 [Herminiimonas...   270   5e-71
ref|YP_004753149.1| RNA binding protein [Collimonas fungivorans ...   263   7e-69
ref|YP_001353929.1| hypothetical protein mma_2239 [Janthinobacte...   262   1e-68
ref|ZP_08275235.1| hypothetical protein IMCC9480_87 [Oxalobacter...   240   4e-62
ref|YP_003774805.1| RNA-binding ribosomal protein [Herbaspirillu...   228   2e-58

>ref|YP_001099473.1| hypothetical protein HEAR1168 [Herminiimonas arsenicoxydans]
 emb|CAL61346.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  270 bits (690), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 133/152 (87%), Positives = 141/152 (92%)

Query: 1   MLKLTPAERSELRAEAHGLSPVVIVGEGGLTPAVTKEIDASLNAHGLIKVRVFGDDREAR 60
           MLKLTPAERS LRAEAH LSPVVI+GE GLTP V KEIDASL++HGLIKVRVFGDDREAR
Sbjct: 1   MLKLTPAERSSLRAEAHALSPVVIIGEAGLTPGVLKEIDASLDSHGLIKVRVFGDDREAR 60

Query: 61  VAIYDTICEELKAAPVQHIGKLLVIFRPKKDAVKERSETRGKGMREVTIVKPSASGTKRP 120
           VAIYDTICE+L  AP+QHIGKLLVI+RPKK+ VKERSETRGKGMREVTIVKPSASGTKRP
Sbjct: 61  VAIYDTICEKLDTAPIQHIGKLLVIYRPKKEVVKERSETRGKGMREVTIVKPSASGTKRP 120

Query: 121 SVTKVMIKGNERVTAGGSIKRAKPRQKSAKKS 152
           SVTKVM+KGNERVT GGSIKRAKPRQ S KKS
Sbjct: 121 SVTKVMVKGNERVTQGGSIKRAKPRQTSPKKS 152


>ref|YP_004753149.1| RNA binding protein [Collimonas fungivorans Ter331]
 gb|AEK62326.1| RNA binding protein [Collimonas fungivorans Ter331]
          Length = 156

 Score =  263 bits (672), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 143/152 (94%)

Query: 1   MLKLTPAERSELRAEAHGLSPVVIVGEGGLTPAVTKEIDASLNAHGLIKVRVFGDDREAR 60
           MLKLT AERSELR++AHGL+PVV++ E GL P++ KEIDASLN+HGLIKVRVFGDDREAR
Sbjct: 1   MLKLTSAERSELRSQAHGLNPVVLISEDGLKPSLMKEIDASLNSHGLIKVRVFGDDREAR 60

Query: 61  VAIYDTICEELKAAPVQHIGKLLVIFRPKKDAVKERSETRGKGMREVTIVKPSASGTKRP 120
           +AIY+TICE+L AAPVQHIGKLLV++RP+KDA KERSETRGKGMREVTIVKPS SGTKRP
Sbjct: 61  IAIYETICEKLGAAPVQHIGKLLVLYRPQKDAAKERSETRGKGMREVTIVKPSPSGTKRP 120

Query: 121 SVTKVMIKGNERVTAGGSIKRAKPRQKSAKKS 152
           SVTKVM+KGNERVT GG+IKRAKPRQKS+KKS
Sbjct: 121 SVTKVMVKGNERVTQGGNIKRAKPRQKSSKKS 152


>ref|YP_001353929.1| hypothetical protein mma_2239 [Janthinobacterium sp. Marseille]
 gb|ABR88985.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 156

 Score =  262 bits (670), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/152 (84%), Positives = 138/152 (90%)

Query: 1   MLKLTPAERSELRAEAHGLSPVVIVGEGGLTPAVTKEIDASLNAHGLIKVRVFGDDREAR 60
           MLKLTPAERS LRAEAH LSPVVI+GE GLTP V KEID SLN+HGLIKVRVFGDDREAR
Sbjct: 1   MLKLTPAERSSLRAEAHALSPVVIIGEAGLTPGVLKEIDGSLNSHGLIKVRVFGDDREAR 60

Query: 61  VAIYDTICEELKAAPVQHIGKLLVIFRPKKDAVKERSETRGKGMREVTIVKPSASGTKRP 120
           V IYDTICE+L AAP+QHIGKLLV++RPKK+AVK  SETRG+GMREVTIVKPS SGTKRP
Sbjct: 61  VTIYDTICEKLDAAPIQHIGKLLVVYRPKKEAVKAPSETRGRGMREVTIVKPSPSGTKRP 120

Query: 121 SVTKVMIKGNERVTAGGSIKRAKPRQKSAKKS 152
           SVTKVM+KGNERVT GGSIKRAKPRQ S KKS
Sbjct: 121 SVTKVMVKGNERVTQGGSIKRAKPRQTSPKKS 152


>ref|ZP_08275235.1| hypothetical protein IMCC9480_87 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31293.1| hypothetical protein IMCC9480_87 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 158

 Score =  240 bits (613), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 138/154 (89%), Gaps = 2/154 (1%)

Query: 1   MLKLTPAERSELRAEAHGLSPVVIVGEGGLTPAVTKEIDASLNAHGLIKVRVFGDDREAR 60
           MLKLTP+ERS LRAEAH L+P+VI+GE GLT  V KEID  L+AHGLIKVRVFGDDREAR
Sbjct: 1   MLKLTPSERSALRAEAHALNPIVIIGEAGLTEPVLKEIDNGLDAHGLIKVRVFGDDREAR 60

Query: 61  VAIYDTICEELKAAPVQHIGKLLVIFRPKKDAVKE-RSET-RGKGMREVTIVKPSASGTK 118
           + +Y+TIC++L AAPVQHIGKLLV++R KKDAVKE RS++ +G+GMREVTIVKPS SGTK
Sbjct: 61  IGMYETICDKLGAAPVQHIGKLLVVYRAKKDAVKELRSDSKKGRGMREVTIVKPSPSGTK 120

Query: 119 RPSVTKVMIKGNERVTAGGSIKRAKPRQKSAKKS 152
           RPSVTKVM+KGNERVT GGSIKRAKPRQ SAKKS
Sbjct: 121 RPSVTKVMVKGNERVTQGGSIKRAKPRQTSAKKS 154


>ref|YP_003774805.1| RNA-binding ribosomal protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62897.1| RNA-binding ribosomal (KH domain containing) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score =  228 bits (581), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/154 (74%), Positives = 134/154 (87%), Gaps = 2/154 (1%)

Query: 1   MLKLTPAERSELRAEAHGLSPVVIVGEGGLTPAVTKEIDASLNAHGLIKVRVFGDDREAR 60
           ML LTPAERSELRA+AHGL+PVV+VGE GL+ +V KEID SLNAHGLIKVRVFGDDREAR
Sbjct: 1   MLTLTPAERSELRAQAHGLNPVVMVGESGLSESVMKEIDKSLNAHGLIKVRVFGDDREAR 60

Query: 61  VAIYDTICEELKAAPVQHIGKLLVIFRPKKDAVKERSETRGKGMREVTIVKPSASGTKRP 120
           +AIY+TIC ELKAAPVQHIGKLLV++RP+KD  K+ +     G+REVTIVK  A  TKRP
Sbjct: 61  IAIYETICAELKAAPVQHIGKLLVLYRPQKDEGKKAAAGAKGGLREVTIVKSHA--TKRP 118

Query: 121 SVTKVMIKGNERVTAGGSIKRAKPRQKSAKKSMG 154
           SV+KVM+KGNER+TAGG +K+AKPRQ+S KKS+G
Sbjct: 119 SVSKVMLKGNERITAGGLVKKAKPRQRSTKKSLG 152