BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0597.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774804.1| transcription elongation factor protein [Her...   211   2e-53
ref|YP_001099471.1| putative transcription elongation factor and...   206   1e-51
ref|YP_004753151.1| transcription elongation factor GreA [Collim...   204   3e-51
ref|YP_001353931.1| GreA transcription elongation factor [Janthi...   199   9e-50
ref|ZP_08275233.1| Transcription elongation factor GreA [Oxaloba...   194   3e-48

>ref|YP_003774804.1| transcription elongation factor protein [Herbaspirillum seropedicae
           SmR1]
 emb|CAM32544.1| Transcription elongation factor protein [Herbaspirillum
           seropedicae]
 gb|ADJ62896.1| transcription elongation factor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 158

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 121/130 (93%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENAEY++AKERQAFIEGRIADLEGKLG++ IVDPA L+  A+GRVVF
Sbjct: 31  NAIAEARAQGDLSENAEYESAKERQAFIEGRIADLEGKLGAAQIVDPAELN--AEGRVVF 88

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
           A+TVDLENLDSGEKVTYQIVG+DEADIK SKVSVTSPIARALIGKSAGDVVAVEAPSG++
Sbjct: 89  ASTVDLENLDSGEKVTYQIVGLDEADIKESKVSVTSPIARALIGKSAGDVVAVEAPSGLK 148

Query: 132 EYEILKVRYV 141
           EYEIL+VRYV
Sbjct: 149 EYEILEVRYV 158


>ref|YP_001099471.1| putative transcription elongation factor and transcript cleavage
           [Herminiimonas arsenicoxydans]
 emb|CAL61344.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Herminiimonas arsenicoxydans]
          Length = 157

 Score =  206 bits (524), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 118/130 (90%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENA+YDAAKE+Q+FIEGRIADLEGKLG+S I+DP TL   ADGR+VF
Sbjct: 30  NAIAEARAQGDLSENADYDAAKEKQSFIEGRIADLEGKLGTSQIIDPTTLE--ADGRIVF 87

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
           AATVDLE+LDSG+KVTYQIVGIDEAD+K  KVS+TSPIARA+IGKS GDVVAVEAP+G+R
Sbjct: 88  AATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSITSPIARAMIGKSVGDVVAVEAPAGIR 147

Query: 132 EYEILKVRYV 141
           EYE+L+VRY+
Sbjct: 148 EYEVLQVRYI 157


>ref|YP_004753151.1| transcription elongation factor GreA [Collimonas fungivorans
           Ter331]
 gb|AEK62328.1| Transcription elongation factor GreA [Collimonas fungivorans
           Ter331]
          Length = 180

 Score =  204 bits (520), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/124 (81%), Positives = 116/124 (93%), Gaps = 2/124 (1%)

Query: 18  RAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVFAATVDL 77
           RA GDLSENA+YDAAKERQ F+EGRIADLEGKLG++ I+DPATL   ADGRVVFA+TVDL
Sbjct: 59  RAHGDLSENADYDAAKERQGFVEGRIADLEGKLGAAQIIDPATLD--ADGRVVFASTVDL 116

Query: 78  ENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVREYEILK 137
           E+L+SG+KVTYQIVG DEADIK+SKVSVTSPIARALIGK+AGDVV V+APSG+REYEIL+
Sbjct: 117 EDLESGDKVTYQIVGTDEADIKMSKVSVTSPIARALIGKTAGDVVGVQAPSGIREYEILE 176

Query: 138 VRYV 141
           VRY+
Sbjct: 177 VRYI 180


>ref|YP_001353931.1| GreA transcription elongation factor [Janthinobacterium sp.
           Marseille]
 gb|ABR88838.1| GreA transcription elongation factor [Janthinobacterium sp.
           Marseille]
          Length = 157

 Score =  199 bits (507), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENA+YDAAKE+Q+FIEGRIAD+EGKLG+S ++DP TL   A+GRVVF
Sbjct: 30  NAIAEARAQGDLSENADYDAAKEKQSFIEGRIADIEGKLGTSQVIDPTTLE--AEGRVVF 87

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
           AATVDLE+L+SGEKVTYQIVGIDEAD+K  KVS+TSPIARA+IGK AGDVV VEAP+G+R
Sbjct: 88  AATVDLEDLESGEKVTYQIVGIDEADLKEKKVSITSPIARAMIGKYAGDVVGVEAPAGLR 147

Query: 132 EYEILKVRYV 141
           EYEIL+VRY+
Sbjct: 148 EYEILQVRYI 157


>ref|ZP_08275233.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31291.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 158

 Score =  194 bits (493), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 114/130 (87%), Gaps = 2/130 (1%)

Query: 12  NAEYXPRAQGDLSENAEYDAAKERQAFIEGRIADLEGKLGSSLIVDPATLSSGADGRVVF 71
           NA    RAQGDLSENAEYDAAKERQ+FIEGRI+DLEGKLGSS I+DP TL   ADGR+VF
Sbjct: 31  NAISEARAQGDLSENAEYDAAKERQSFIEGRISDLEGKLGSSQIIDPLTLE--ADGRIVF 88

Query: 72  AATVDLENLDSGEKVTYQIVGIDEADIKVSKVSVTSPIARALIGKSAGDVVAVEAPSGVR 131
            +TV LE+L++G+KVTYQIVG DEAD+K  KVSVTSPIARALIGK AGDVV V+AP+GVR
Sbjct: 89  GSTVYLEDLETGDKVTYQIVGTDEADLKQLKVSVTSPIARALIGKVAGDVVGVQAPAGVR 148

Query: 132 EYEILKVRYV 141
           EYE+L+VRY+
Sbjct: 149 EYEVLEVRYI 158