BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0591.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_995826.1| TetR family transcriptional regulator [Verminep... 234 6e-60 ref|YP_002005421.1| TetR family transcriptional regulator [Cupri... 232 3e-59 ref|YP_004753926.1| TetR family transcriptional regulator [Colli... 231 6e-59 ref|YP_003775423.1| transcription regulator protein [Herbaspiril... 220 9e-56 ref|YP_001629937.1| TetR family transcriptional regulator [Borde... 220 1e-55 >ref|YP_995826.1| TetR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM56808.1| transcriptional regulator, TetR family [Verminephrobacter eiseniae EF01-2] Length = 208 Score = 234 bits (597), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 113/202 (55%), Positives = 153/202 (75%) Query: 3 STPPNIPRSRGRPREFDIDAALDKAIVVFTEKGYYGASVSDLGTALGLTAGSIYKAFDDK 62 S P ++PRSRGRPREFDID ALD+AI +F ++GY+ S+ +LG A+GLTAGSIYKAF DK Sbjct: 7 SAPMDLPRSRGRPREFDIDEALDRAIRIFCQRGYHATSIGELGEAMGLTAGSIYKAFKDK 66 Query: 63 RAVFIAALERYIALRTERLRQALESARTGRERVRTLLALYAASSYDDDGRRGCLIVSSAV 122 RAVF+AA +R ++R +L A+++A TGRE++ +LA YA+ S+ +G+ GCL+VS+AV Sbjct: 67 RAVFLAAFDRQASMRGAQLMTAIDAASTGREKLHRILAFYASLSHGAEGQHGCLVVSTAV 126 Query: 123 ELAISDPEIAGRVAQSLDVHEKRLALFIRQGQEDGSVPAHVEAAATARLLLCVMQGMRVI 182 ELA D E+A RV SL EK L IR GQ DGS+PA V++ ATA+ +LC++QG+RV+ Sbjct: 127 ELAAFDEEVADRVVDSLQRREKLLIRLIRVGQSDGSIPAKVDSQATAKFMLCLLQGLRVV 186 Query: 183 GKTGRSKKEMNGLIDKAMKVLD 204 GKTG SK M+ ++ AMKVLD Sbjct: 187 GKTGPSKAAMSAAVEVAMKVLD 208 >ref|YP_002005421.1| TetR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ69354.1| putative transcriptional regulator, TetR family [Cupriavidus taiwanensis LMG 19424] Length = 207 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 111/201 (55%), Positives = 153/201 (76%) Query: 3 STPPNIPRSRGRPREFDIDAALDKAIVVFTEKGYYGASVSDLGTALGLTAGSIYKAFDDK 62 S P PRSRGRPREF +D ALD+A+ VF+E+GY+GAS+SDL A+ L GS+YKAF DK Sbjct: 6 SHNPTRPRSRGRPREFSLDQALDRAVRVFSERGYHGASISDLTRAMRLAQGSLYKAFKDK 65 Query: 63 RAVFIAALERYIALRTERLRQALESARTGRERVRTLLALYAASSYDDDGRRGCLIVSSAV 122 +++F+AA +RY +LR+E L++A+++A TG +R+R LA YA S+ GR+GCL+V+S V Sbjct: 66 QSLFLAAFDRYRSLRSETLQRAIDNAGTGLDRLRATLAFYAESAQGAAGRQGCLVVASTV 125 Query: 123 ELAISDPEIAGRVAQSLDVHEKRLALFIRQGQEDGSVPAHVEAAATARLLLCVMQGMRVI 182 EL D +A +A +L +E LA IRQGQEDGS+PAHV ATA++LLC+ QGMRV+ Sbjct: 126 ELCAFDKPVARHIAAALSRNEAFLAELIRQGQEDGSIPAHVNVEATAQVLLCLTQGMRVV 185 Query: 183 GKTGRSKKEMNGLIDKAMKVL 203 GKTGRS+++M ++D A+KVL Sbjct: 186 GKTGRSREQMQAVVDAALKVL 206 >ref|YP_004753926.1| TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63103.1| transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 207 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 109/201 (54%), Positives = 150/201 (74%) Query: 3 STPPNIPRSRGRPREFDIDAALDKAIVVFTEKGYYGASVSDLGTALGLTAGSIYKAFDDK 62 S P N+ RSRGRPREFD+D ALDKA+ VF+E+GY+ +V DL A+ L +GS+YKAF DK Sbjct: 6 SDPVNVSRSRGRPREFDMDQALDKAVRVFSERGYHATTVCDLTQAMQLASGSVYKAFKDK 65 Query: 63 RAVFIAALERYIALRTERLRQALESARTGRERVRTLLALYAASSYDDDGRRGCLIVSSAV 122 ++VF+AAL+RY +R +LR + + TG+++VR LA YA +S+ G GC++V SA Sbjct: 66 KSVFLAALDRYKTVRDAQLRAVVSAGATGKDQVRLALAFYADASHGAGGLEGCMVVGSAA 125 Query: 123 ELAISDPEIAGRVAQSLDVHEKRLALFIRQGQEDGSVPAHVEAAATARLLLCVMQGMRVI 182 ELA DP++A V +L +E + IRQGQ+DGS+P H+++AATARLLLC++QGMRV+ Sbjct: 126 ELATFDPDVAQWVTAALTRNEVLIGALIRQGQQDGSIPPHIDSAATARLLLCMIQGMRVV 185 Query: 183 GKTGRSKKEMNGLIDKAMKVL 203 GKTGR++ EM+ L D AMKVL Sbjct: 186 GKTGRTRNEMSVLTDIAMKVL 206 >ref|YP_003775423.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63515.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 220 bits (561), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 108/192 (56%), Positives = 145/192 (75%) Query: 13 GRPREFDIDAALDKAIVVFTEKGYYGASVSDLGTALGLTAGSIYKAFDDKRAVFIAALER 72 GRPREFD D ALD A+ VF+E+GY GAS+SDL A+ L GS+YKAF DK+++F+AALER Sbjct: 32 GRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKAFRDKQSLFLAALER 91 Query: 73 YIALRTERLRQALESARTGRERVRTLLALYAASSYDDDGRRGCLIVSSAVELAISDPEIA 132 Y R+E+LR+A+++ TGRER+R +L YA S+ GR+GCL+VSSAV + +P +A Sbjct: 92 YRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVVSSAVAITGFEPSVA 151 Query: 133 GRVAQSLDVHEKRLALFIRQGQEDGSVPAHVEAAATARLLLCVMQGMRVIGKTGRSKKEM 192 ++A +L +E L IRQGQ+DGSV AH + +TARLLLC+ QGMRV+GK GRS+KEM Sbjct: 152 TQIASTLARNEALLGELIRQGQQDGSVAAHADPPSTARLLLCLTQGMRVVGKAGRSRKEM 211 Query: 193 NGLIDKAMKVLD 204 L++ A+KVLD Sbjct: 212 LALVEVALKVLD 223 >ref|YP_001629937.1| TetR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP41667.1| transcriptional regulator, TetR-family [Bordetella petrii] Length = 208 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 106/203 (52%), Positives = 145/203 (71%) Query: 2 ASTPPNIPRSRGRPREFDIDAALDKAIVVFTEKGYYGASVSDLGTALGLTAGSIYKAFDD 61 A+ P +I R RGRPREFDI ALD+AI+ F E GY G S++DL AL L+AGSIYKAF Sbjct: 6 AAAPHHISRERGRPREFDIHTALDRAILYFREHGYNGVSIADLSQALKLSAGSIYKAFHS 65 Query: 62 KRAVFIAALERYIALRTERLRQALESARTGRERVRTLLALYAASSYDDDGRRGCLIVSSA 121 K +F AAL+RY+ALR +++ + SA +GRE++R LL YA SS+ +GR GCL+V A Sbjct: 66 KHGLFTAALDRYMALRGQQIAEITASAESGREKLRRLLVFYAESSHAAEGRYGCLVVVGA 125 Query: 122 VELAISDPEIAGRVAQSLDVHEKRLALFIRQGQEDGSVPAHVEAAATARLLLCVMQGMRV 181 VEL+ +D IA +VA +L +E+RL I QGQ+DGS+ E TA+L+L ++QGMRV Sbjct: 126 VELSSTDEAIAAKVASALSANERRLKAIIEQGQQDGSISRTAEPGTTAKLMLALLQGMRV 185 Query: 182 IGKTGRSKKEMNGLIDKAMKVLD 204 +GK G+++K M ++D AMK+LD Sbjct: 186 LGKVGQNRKAMMAVVDTAMKLLD 208