BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0589.p (159 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004380514.1| ECF subfamily RNA polymerase sigma-24 factor... 184 5e-45 ref|YP_001666941.1| ECF subfamily RNA polymerase sigma-24 factor... 180 7e-44 ref|YP_257292.2| ECF family RNA polymerase sigma factor [Pseudom... 179 1e-43 ref|YP_785729.1| RNA polymerase ECF family sigma factor [Bordete... 177 5e-43 ref|NP_890195.1| ECF family RNA polymerase sigma factor [Bordete... 176 1e-42 >ref|YP_004380514.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas mendocina NK-01] gb|AEB58762.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas mendocina NK-01] Length = 172 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 95/156 (60%), Positives = 114/156 (73%) Query: 4 LYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGLVID 63 LY HH WL GWLRRR G+ E AAD+AQDTFLR++V+RR E R LA IAR LVID Sbjct: 17 LYDNHHGWLKGWLRRRLGDRERAADIAQDTFLRLLVTRRMPEHGEGRRFLAQIARNLVID 76 Query: 64 HFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLSQLD 123 +RR +E A+L+ LA LP PS E R V+ETL QIDAML ++P KVR AFLLSQ + Sbjct: 77 QWRRQRIEQAYLDSLAALPEPETPSLETRAMVIETLLQIDAMLDSMPRKVREAFLLSQFE 136 Query: 124 GLSYAEIAVRLEVSLSSVQQYMKRAFMACYRVQYGD 159 GL+Y +IAVRLEVS+SSVQ+YM RA ACY+V Y + Sbjct: 137 GLTYPQIAVRLEVSVSSVQKYMLRAIAACYQVLYAE 172 >ref|YP_001666941.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas putida GB-1] gb|ABY96605.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pseudomonas putida GB-1] Length = 168 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 93/159 (58%), Positives = 116/159 (72%) Query: 1 MAGLYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGL 60 + LY HH WL GWLR R G+ E AAD+AQDTFLR++V+RR ++ R LA IAR L Sbjct: 10 LDSLYRDHHGWLQGWLRLRLGDRERAADIAQDTFLRLLVTRRLPEQNDGRRFLAQIARNL 69 Query: 61 VIDHFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLS 120 VID +RR ++ A+LE LA LP PS E R V+ETL QIDAML ++PAKVR AFLLS Sbjct: 70 VIDQWRRQRIKHAYLESLAALPEPESPSLETRAIVIETLMQIDAMLDSMPAKVREAFLLS 129 Query: 121 QLDGLSYAEIAVRLEVSLSSVQQYMKRAFMACYRVQYGD 159 Q +GL+Y++IA RLEVS+SSVQ+YM RA ACY+V Y + Sbjct: 130 QFEGLTYSQIAERLEVSVSSVQKYMLRAITACYQVLYAE 168 >ref|YP_257292.2| ECF family RNA polymerase sigma factor [Pseudomonas fluorescens Pf-5] gb|AAY95557.2| RNA polymerase sigma-70 factor, ECF family [Pseudomonas fluorescens Pf-5] Length = 169 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/156 (57%), Positives = 114/156 (73%) Query: 4 LYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGLVID 63 LY HH WL GWLR+R G+ E AAD+AQDTFLR+++S R E+R+ LA IAR LV+D Sbjct: 14 LYQDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLLSGRFPGQQESRSYLAQIARNLVVD 73 Query: 64 HFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLSQLD 123 +RR +E A+LE +A LP PS E+R +LETL QIDAML +P KVR AF++SQ + Sbjct: 74 QWRRARIERAYLESIAHLPEPQTPSLESRALILETLMQIDAMLDRMPDKVRQAFVMSQFE 133 Query: 124 GLSYAEIAVRLEVSLSSVQQYMKRAFMACYRVQYGD 159 GL YA+IA RLEVS+SSVQ+YM RA ACY+V Y + Sbjct: 134 GLGYAQIAERLEVSVSSVQKYMTRAIQACYQVLYAE 169 >ref|YP_785729.1| RNA polymerase ECF family sigma factor [Bordetella avium 197N] emb|CAJ48815.1| RNA polymerase ECF-family sigma factor [Bordetella avium 197N] Length = 169 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 86/153 (56%), Positives = 111/153 (72%) Query: 3 GLYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGLVI 62 GLY H WL+GWLRR+ G + A D+AQD F+RI+ R+ + +ARA L TIARG++I Sbjct: 14 GLYRQHRSWLMGWLRRKLGGSDHAEDMAQDVFIRIIQGRKQVDVVQARAFLTTIARGMLI 73 Query: 63 DHFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLSQL 122 DH+RR ALEAA+ + LA LP P PEAR+ V+++L +D MLA L + R AF+LSQ+ Sbjct: 74 DHWRRAALEAAYRDYLASLPQVSEPGPEARIEVMQSLAVLDRMLAGLSPRAREAFMLSQI 133 Query: 123 DGLSYAEIAVRLEVSLSSVQQYMKRAFMACYRV 155 DGL+Y EIAVRL VS+SSVQQYM +A ACY V Sbjct: 134 DGLTYPEIAVRLGVSVSSVQQYMVKAMSACYEV 166 >ref|NP_890195.1| ECF family RNA polymerase sigma factor [Bordetella bronchiseptica RB50] emb|CAE35633.1| ECF-family sigma factor [Bordetella bronchiseptica RB50] Length = 177 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 87/151 (57%), Positives = 108/151 (71%) Query: 3 GLYTGHHHWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARALLATIARGLVI 62 GLY H WL GWLRRR G P A DL QD F+R++ R+ +++ARALLATIA+GLVI Sbjct: 22 GLYRQHRSWLAGWLRRRLGCPHRAEDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLVI 81 Query: 63 DHFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQIDAMLAALPAKVRSAFLLSQL 122 DH RR ALE A+LE LA P H PSP+ + +L+ L ++D +L LP + R+ FL+SQL Sbjct: 82 DHQRRAALEHAYLEYLAAQPSGHAPSPQQQAELLQALVELDRLLEGLPPRARAVFLMSQL 141 Query: 123 DGLSYAEIAVRLEVSLSSVQQYMKRAFMACY 153 +GL YAEIA RL +SLSSVQQYM RA ACY Sbjct: 142 EGLGYAEIAQRLRISLSSVQQYMLRAMSACY 172