BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0580.p         (159 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_367284.1| branched chain amino acid ABC transporter inner...   177   5e-43
ref|YP_001629772.1| putative branched-chain amino acid transport...   167   6e-40
ref|YP_003982666.1| inner-membrane translocator 76 [Achromobacte...   166   8e-40
ref|NP_886916.1| branched-chain amino acid transport system perm...   166   9e-40
ref|NP_882718.1| branched-chain amino acid transport system perm...   166   1e-39

>ref|YP_367284.1| branched chain amino acid ABC transporter inner membrane protein
           [Burkholderia sp. 383]
 gb|ABB06640.1| amino acid/amide ABC transporter membrane protein 1, HAAT family
           [Burkholderia sp. 383]
          Length = 291

 Score =  177 bits (449), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 107/119 (89%)

Query: 37  TQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVAGALLAPISVISPTLGADY 96
           T+FGKA+RAV+IDHEAAMLQGIP++RIAF+GF  AT +GAVAGAL+AP++ ++PTLG  Y
Sbjct: 167 TRFGKALRAVSIDHEAAMLQGIPYRRIAFRGFVAATAIGAVAGALIAPVAAVTPTLGDAY 226

Query: 97  LIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDPSIANLTIFILVMLVLMVRPH 155
           L+KGFIAV+IGG+GSV GAI+GSLFIA+VES  GFYFDPS+A+L IF+LVM VL+VRP 
Sbjct: 227 LVKGFIAVVIGGMGSVAGAILGSLFIAVVESFVGFYFDPSVASLAIFVLVMAVLLVRPK 285


>ref|YP_001629772.1| putative branched-chain amino acid transport permease [Bordetella
           petrii DSM 12804]
 emb|CAP41502.1| putative branched-chain amino acid transport permease [Bordetella
           petrii]
          Length = 287

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 108/137 (78%)

Query: 19  IXLAAIVATGALYWILMVTQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVA 78
           I   A++    + W +  ++ GKA+RAV+ DHEAAMLQGIP++RIA  GF +AT L A+A
Sbjct: 145 ITCCALLVAALMCWTIASSRLGKALRAVSEDHEAAMLQGIPYRRIALAGFFIATSLAAIA 204

Query: 79  GALLAPISVISPTLGADYLIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDPSIA 138
             LL+P++V SP +G+DYLI+GFIA++IGGLGS+PGAI+GSL IA++ES+GG+YFDP+ A
Sbjct: 205 AVLLSPVTVSSPIIGSDYLIRGFIAIVIGGLGSIPGAILGSLLIAVIESLGGYYFDPTWA 264

Query: 139 NLTIFILVMLVLMVRPH 155
            +T+F L M VL+VRP 
Sbjct: 265 TITMFALTMFVLLVRPK 281


>ref|YP_003982666.1| inner-membrane translocator 76 [Achromobacter xylosoxidans A8]
 gb|ADP19951.1| inner-membrane translocator 76 [Achromobacter xylosoxidans A8]
          Length = 291

 Score =  166 bits (421), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 108/137 (78%)

Query: 19  IXLAAIVATGALYWILMVTQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVA 78
           I   A++    + W +  ++ GKA+RAV+ DHEAAMLQGIP++RIA  GF +AT L A+A
Sbjct: 149 ITCCALLVAVLMCWTITSSRLGKALRAVSEDHEAAMLQGIPYRRIALAGFFIATSLAAIA 208

Query: 79  GALLAPISVISPTLGADYLIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDPSIA 138
             LL+P++V SP +G+DYLI+GFIA++IGGLGS+PGAI+GSL IA++ES+GG+YFDP+ A
Sbjct: 209 AVLLSPVTVSSPVIGSDYLIRGFIAIVIGGLGSIPGAILGSLLIAVIESLGGYYFDPTWA 268

Query: 139 NLTIFILVMLVLMVRPH 155
            +T+F L M VL+VRP 
Sbjct: 269 TITMFALTMFVLLVRPK 285


>ref|NP_886916.1| branched-chain amino acid transport system permease [Bordetella
           bronchiseptica RB50]
 emb|CAE30865.1| branched-chain amino acid transport system permease [Bordetella
           bronchiseptica RB50]
          Length = 291

 Score =  166 bits (421), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 105/126 (83%)

Query: 30  LYWILMVTQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVAGALLAPISVIS 89
           + W ++ ++ GKA+RAVA DHEAAMLQGIP++RIA  GF +AT+L A+A  LL+P++V S
Sbjct: 160 MCWTIVSSRLGKALRAVAEDHEAAMLQGIPYRRIALAGFLIATVLAAIAAVLLSPVTVSS 219

Query: 90  PTLGADYLIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDPSIANLTIFILVMLV 149
           P +G DYLI+GFIA++IGGLGS+PGAI+GS+ IA++ES+GG+YFDP+ A +T+F L M V
Sbjct: 220 PIIGNDYLIRGFIAIVIGGLGSIPGAILGSVLIAVIESLGGYYFDPTWATITMFALTMFV 279

Query: 150 LMVRPH 155
           L+VRP 
Sbjct: 280 LLVRPK 285


>ref|NP_882718.1| branched-chain amino acid transport system permease [Bordetella
           parapertussis 12822]
 emb|CAE35948.1| branched-chain amino acid transport system permease [Bordetella
           parapertussis]
          Length = 291

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 105/126 (83%)

Query: 30  LYWILMVTQFGKAMRAVAIDHEAAMLQGIPFKRIAFQGFAVATLLGAVAGALLAPISVIS 89
           + W ++ ++ GKA+RAVA DHEAAMLQGIP++RIA  GF +AT+L A+A  LL+P++V S
Sbjct: 160 MCWTIVSSRLGKALRAVAEDHEAAMLQGIPYRRIALAGFLIATVLAAIAAVLLSPVTVSS 219

Query: 90  PTLGADYLIKGFIAVIIGGLGSVPGAIIGSLFIALVESIGGFYFDPSIANLTIFILVMLV 149
           P +G DYLI+GFIA++IGGLGS+PGAI+GS+ IA++ES+GG+YFDP+ A +T+F L M V
Sbjct: 220 PIIGNDYLIRGFIAIVIGGLGSIPGAILGSVLIAVIESLGGYYFDPTWATITMFALTMFV 279

Query: 150 LMVRPH 155
           L+VRP 
Sbjct: 280 LLVRPK 285