BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0565.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777564.1| hypothetical protein Hsero_4186 [Herbaspiril... 206 3e-51 ref|YP_001092988.1| hypothetical protein Shew_0857 [Shewanella l... 137 2e-30 ref|YP_932761.1| hypothetical protein azo1257 [Azoarcus sp. BH72... 134 2e-29 ref|YP_001759380.1| hypothetical protein Swoo_0992 [Shewanella w... 130 2e-28 ref|YP_926540.1| hypothetical protein Sama_0662 [Shewanella amaz... 126 2e-27 >ref|YP_003777564.1| hypothetical protein Hsero_4186 [Herbaspirillum seropedicae SmR1] gb|ADJ65656.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 247 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 121/247 (48%), Positives = 160/247 (64%), Gaps = 30/247 (12%) Query: 13 PATSLPATNDAAATD-DAAKTEGASGASDIK---------LTPAIAKQQLNAAILQSSLE 62 P+T LP+ N + ++ D AS A K LT A AK Q N +I+Q+SLE Sbjct: 16 PSTKLPSVNAGSTSESDRQSANAASPAVSDKIAEAKKANLLTEAGAKAQFNLSIVQASLE 75 Query: 63 VSLSSQNDPLSLVYKSAIENLNEILKPELGDNAIQNAASQDNSPEATADRILSFIKSAFG 122 VSL +QNDPLSLVYK+AIEN+N++L+P+LGDNAIQN ASQDN+PEATA RI+SFI + F Sbjct: 76 VSLQTQNDPLSLVYKTAIENINDVLRPQLGDNAIQNTASQDNTPEATAGRIVSFITNMFD 135 Query: 123 LFSQNSPTSSSADGTEGTDGADGTDNTKRDGNIDKFMSLIQKGVDQGFDEARGILSSLKV 182 LF +N+P D D++ NID +M LI KGVDQGF EARGIL SL V Sbjct: 136 LFKKNNP--------------DKDDSS----NIDDYMKLIFKGVDQGFKEARGILESLSV 177 Query: 183 LNGDIASNIDKTYEILKKGIADFVASLK--NPTTDDGSAPADGSSNTTTTTSVSVSVSVT 240 L GDIA NIDKTY++++K + DF+ +K P T++G DG T + +VS+S++ Sbjct: 178 LQGDIADNIDKTYDLVQKSLNDFINKVKGAKPDTEEGQGQNDGQGGTVVASETTVSISIS 237 Query: 241 ASRTTIT 247 S+T I+ Sbjct: 238 VSQTRIS 244 >ref|YP_001092988.1| hypothetical protein Shew_0857 [Shewanella loihica PV-4] gb|ABO22729.1| conserved hypothetical protein [Shewanella loihica PV-4] Length = 199 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 20/177 (11%) Query: 42 KLTPAIAKQQLNAAILQSSLEVSLSSQNDPLSLVYKSAIENLNEILKPELGDNAIQNAAS 101 K A +KQ +N AIL++ EV+LS+ N+P+ L+YK+AIE +NE L P +G++AI+ AA+ Sbjct: 41 KTALAASKQLMNTAILEAQQEVNLSAGNEPMQLLYKAAIEAINEELAPTMGEHAIERAAA 100 Query: 102 Q--DNSPEATADRILSFIKSAFGLFSQNSPTSSSADGTEGTDGADGTDNTKRDGNIDKFM 159 Q D SPEATA+RI+SF F + Q + + S D + FM Sbjct: 101 QGVDTSPEATAERIVSFATQFFAIHQQQNSSMS------------------FDEQLSSFM 142 Query: 160 SLIQKGVDQGFDEARGILSSLKVLNGDIASNIDKTYEILKKGIADFVASLKNPTTDD 216 +I +DQGFDEA+ ILS LKVL GDIA+ +DKTY ++++G+ F S T + Sbjct: 143 DIIGGAIDQGFDEAKDILSGLKVLEGDIAAGVDKTYALVQEGLQAFRDSFNQETEQE 199 >ref|YP_932761.1| hypothetical protein azo1257 [Azoarcus sp. BH72] emb|CAL93874.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 214 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 100/161 (62%), Gaps = 18/161 (11%) Query: 49 KQQLNAAILQSSLEVSLSSQNDPLSLVYKSAIENLNEILKPELGDNAIQNAASQDNSPEA 108 + Q N ILQ+SLEVS+S ND +L+++SAIE +NE+L E +A+Q AASQDNSPEA Sbjct: 42 RSQQNNRILQASLEVSISVGNDSQALLFRSAIEKINEMLGTEQVPDALQKAASQDNSPEA 101 Query: 109 TADRILSFIKSAFGLFSQNSPTSSSADGTEGTDGADGTDNTKRDGNIDKFMSLIQKGVDQ 168 TADRILSF A GLF+ S AD + T AD F+ L++ G Q Sbjct: 102 TADRILSF---ATGLFASYSTQHPGAD--QATLAAD-------------FVELVRGGFQQ 143 Query: 169 GFDEARGILSSLKVLNGDIASNIDKTYEILKKGIADFVASL 209 GFDEA IL LKV G IA I KTY+++ KG DF+ASL Sbjct: 144 GFDEAVDILKGLKVFEGGIAEGIQKTYDLVMKGFDDFLASL 184 >ref|YP_001759380.1| hypothetical protein Swoo_0992 [Shewanella woodyi ATCC 51908] gb|ACA85285.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908] Length = 196 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/171 (43%), Positives = 102/171 (59%), Gaps = 22/171 (12%) Query: 42 KLTPAIAKQQLNAAILQSSLEVSLSSQNDPLSLVYKSAIENLNEILKPELGDNAIQNAAS 101 K A +KQ +N+AI+ + EVSLSS N+PL L+Y++AIE +NE L P +G+NA+Q A Sbjct: 35 KTAYASSKQLMNSAIISAQQEVSLSSSNEPLVLLYRAAIEAINEELAPSMGENALQTAYD 94 Query: 102 Q--DNSPEATADRILSFIKSAFGLF-SQNSPTSSSADGTEGTDGADGTDNTKRDGNIDKF 158 D SPEATADRI+SF + F L+ QNS N D + F Sbjct: 95 NGVDTSPEATADRIVSFATNFFSLYQEQNS-------------------NMSFDEQLTSF 135 Query: 159 MSLIQKGVDQGFDEARGILSSLKVLNGDIASNIDKTYEILKKGIADFVASL 209 M +I +DQGFDEA+ IL+ L+VL GDIA +D+TY +++ G+ F S Sbjct: 136 MEIIGGAIDQGFDEAKDILNGLQVLEGDIADGVDQTYSLVQDGLLAFKESF 186 >ref|YP_926540.1| hypothetical protein Sama_0662 [Shewanella amazonensis SB2B] gb|ABL98870.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 202 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 103/171 (60%), Gaps = 23/171 (13%) Query: 52 LNAAILQSSLEVSLSSQNDPLSLVYKSAIENLNEILKPELGDNAIQNAASQ--DNSPEAT 109 +NAAIL + EV+LS+ ++P+ L+Y++AIE +NE L P +G+ AI+ A + D SPEAT Sbjct: 50 MNAAILSAQQEVNLSAADEPMVLLYRAAIEAINEQLAPTMGEQAIERLAEEGVDTSPEAT 109 Query: 110 ADRILSFIKSAFGLF-SQNSPTSSSADGTEGTDGADGTDNTKRDGNIDKFMSLIQKGVDQ 168 A RI+ F F L+ SQNS + + ++ FM +I +DQ Sbjct: 110 AGRIVDFATQFFSLYQSQNS-------------------SQPLEQQLEGFMGVIGGAIDQ 150 Query: 169 GFDEARGILSSLKVLNGDIASNIDKTYEILKKGIADFVASLKNPTTDDGSA 219 GF EAR ILS LKVL GDIA +D+TY ++++G+ DF + NP + + SA Sbjct: 151 GFKEARDILSGLKVLEGDIADGVDRTYALVQQGLKDFAQKM-NPQSKEESA 200