BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0563.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776939.1| branched-chain amino acid ABC transporter pe... 202 4e-50 ref|YP_585294.1| ABC-type branched-chain amino acid transport sy... 202 8e-50 ref|YP_001900666.1| extracellular ligand-binding receptor [Ralst... 195 7e-48 ref|YP_002982689.1| extracellular ligand-binding receptor [Ralst... 194 2e-47 ref|YP_004754303.1| putative LEU/ILE/VAL-binding signal peptide ... 191 1e-46 >ref|YP_003776939.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65031.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 383 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 114/269 (42%), Positives = 160/269 (59%), Gaps = 5/269 (1%) Query: 18 NDIVVGQSADLSGPYAKLTRQFITGANVYFAQLNSRGGITGRRVRLMTLDDQNDPTLALK 77 ++V+GQSA SGP + L R F+ GA YFA +N++GG+ GRRVRL++LDD +P Sbjct: 33 TEVVLGQSAPFSGPASDLGRDFLVGAQSYFAMVNAKGGVHGRRVRLLSLDDGYEPERTAA 92 Query: 78 NTQDLLDEHKAIALFGYIGAQTTVAVLPLINERKVPYFAPVTGSWIVYAAFNRHVFTIRA 137 NTQ L+ K ALFGY G TT+A LP I E VP FAPV+G+ + FNR +F +RA Sbjct: 93 NTQQLIWRDKVFALFGYSGTATTLAALPAIREANVPLFAPVSGALALREPFNRLIFHVRA 152 Query: 138 SYANEYDYLFSRFTQMGLKRLAIF--NDATGLPHNAMMKAKISNANAQLVASESIMGQN- 194 SYA E D+L + G +++A+F ND G ++ + LV + ++ + Sbjct: 153 SYAQETDFLLRQLQGTGRRKVAVFYQNDELGKSMLEQLRLRALVYGLTLVGTAAVERNSD 212 Query: 195 -VAKIADKLLESRPDVVLIMSISQNVNSALIRSLRAKGYLGYFYCASLVCSPLLTSDLEE 253 V A LL+ +PDVV I +S +ALI +R GYLG F S V S L++ L+E Sbjct: 213 AVEGAAQALLKVKPDVV-IQVVSYRPAAALIARMRQAGYLGGFSHYSFVGSLSLSARLKE 271 Query: 254 AASGLIISQIVPHPWKARTPIVHEYQKAM 282 G I+Q+VP P KAR P+V+EY+KA+ Sbjct: 272 CGIGAEIAQVVPFPNKARLPLVYEYRKAV 300 >ref|YP_585294.1| ABC-type branched-chain amino acid transport system periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF10025.1| ABC-type branched-chain amino acid transport system, periplasmic component [Cupriavidus metallidurans CH34] Length = 398 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 107/279 (38%), Positives = 173/279 (62%), Gaps = 15/279 (5%) Query: 18 NDIVVGQSADLSGPYAKLTRQFITGANVYFAQLNSRGGITGRRVRLMTLDDQNDPTLALK 77 + I++GQSA LSGP A L +Q GA +YF +N +GG+ GR++ L LDD +P A+K Sbjct: 45 DSILLGQSAALSGPTAVLGKQMNAGARLYFDYINKQGGVFGRKIELKALDDMYEPEEAVK 104 Query: 78 NTQDLLDEHKAIALFGYIGAQTTVAVLPLINERKVPYFAPVTGSWIVYAAFNRHVFTIRA 137 NT+ L++E + ALFGY+G T+ AV+PL+N+ ++P+FAP TG+ + +R+VF +RA Sbjct: 105 NTKKLIEEDRVFALFGYVGTPTSQAVMPLVNQARIPFFAPFTGAQSLRDPQSRYVFHVRA 164 Query: 138 SYANEYDYLFSRFTQMGLKRL-AIFND-------ATGLPHNAMMKAKISNANAQLVASES 189 Y E + + GLKR+ +FND +G+ H +KA +++ QLVA ES Sbjct: 165 GYEEETAAIVRQIRTTGLKRIVVVFNDDAYGRAGLSGVEH--AIKALPADSGVQLVAQES 222 Query: 190 IMGQNVAKIADKL---LESRPDVVLIMSISQNVNSALIRSLRAKGYLGYFYCASLVCSPL 246 ++ +N +I D + ++++PD V+++S + V + + +LR +GY G FY S V + Sbjct: 223 VI-RNTVEIGDAMQTAMKAKPDAVVLISAYRTVGAFVKEALR-RGYSGQFYNVSFVGTQA 280 Query: 247 LTSDLEEAASGLIISQIVPHPWKARTPIVHEYQKAMRPA 285 L ++ SG+IISQ++PHP A P+V EY + ++ A Sbjct: 281 LAKEVGPQGSGVIISQVMPHPGNATLPVVREYLRLLQAA 319 >ref|YP_001900666.1| extracellular ligand-binding receptor [Ralstonia pickettii 12J] gb|ACD28234.1| Extracellular ligand-binding receptor [Ralstonia pickettii 12J] Length = 385 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 107/274 (39%), Positives = 164/274 (59%), Gaps = 8/274 (2%) Query: 17 NNDIVVGQSADLSGPYAKLTRQFITGANVYFAQLNSRGGITGRRVRLMTLDDQNDPTLAL 76 N+ I+VGQSA +SGP AKL +Q GA +YF +N+ GGI GR++ L LDD +P Sbjct: 33 NDAIIVGQSAPMSGPAAKLGQQMNRGAQLYFNAVNAAGGINGRKIELKVLDDFYEPDATA 92 Query: 77 KNTQDLLDEHKAIALFGYIGAQTTVAVLPLINERKVPYFAPVTGSWIVYAAFNRHVFTIR 136 +NT+ L+++ K ALFGY+G T++A L + N VP+FAP +G+ + F R+VF +R Sbjct: 93 RNTKTLIEDTKVFALFGYVGTPTSLAALKIANPAGVPFFAPYSGASALREPFARNVFHVR 152 Query: 137 ASYANEYDYLFSRFTQMGLKRLA-IFND----ATGLPHNAMMKAKISNANAQLVASESIM 191 ASY +E + + GLKR+A I+ND GL +N LVA S++ Sbjct: 153 ASYNDETAAIVQQIHTTGLKRIAVIYNDDAYGKAGLDGVQRALKLPANKGVSLVAQASVV 212 Query: 192 --GQNVAKIADKLLESRPDVVLIMSISQNVNSALIRSLRAKGYLGYFYCASLVCSPLLTS 249 +V +LE +PDVV+++S Q V +AL++ + +GY G FY S V + L + Sbjct: 213 RNTTDVKSAITTVLEQKPDVVVVISAYQTV-AALVKGAQEQGYAGQFYNVSFVGTKALAN 271 Query: 250 DLEEAASGLIISQIVPHPWKARTPIVHEYQKAMR 283 L +A G+IISQ++P+P+ +P+V +YQK ++ Sbjct: 272 ALGKAGGGVIISQVMPYPYSGASPVVRDYQKLLK 305 >ref|YP_002982689.1| extracellular ligand-binding receptor [Ralstonia pickettii 12D] ref|ZP_07677719.1| extracellular ligand-binding receptor [Ralstonia sp. 5_7_47FAA] gb|ACS64017.1| Extracellular ligand-binding receptor [Ralstonia pickettii 12D] gb|EFP63786.1| extracellular ligand-binding receptor [Ralstonia sp. 5_7_47FAA] Length = 385 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 106/274 (38%), Positives = 164/274 (59%), Gaps = 8/274 (2%) Query: 17 NNDIVVGQSADLSGPYAKLTRQFITGANVYFAQLNSRGGITGRRVRLMTLDDQNDPTLAL 76 N+ I+VGQSA +SGP A+L +Q GA +YF +N+ GGI GR++ L LDD +P Sbjct: 33 NDAIIVGQSAPMSGPAAQLGQQMNRGAQLYFNAVNAAGGINGRKIELKVLDDFYEPDATA 92 Query: 77 KNTQDLLDEHKAIALFGYIGAQTTVAVLPLINERKVPYFAPVTGSWIVYAAFNRHVFTIR 136 +NT+ L+++ K ALFGY+G T++A L + N VP+FAP +G+ + F R+VF +R Sbjct: 93 RNTKTLIEDTKVFALFGYVGTPTSLAALKIANPAGVPFFAPYSGASALREPFARNVFHVR 152 Query: 137 ASYANEYDYLFSRFTQMGLKRLA-IFND----ATGLPHNAMMKAKISNANAQLVASESIM 191 ASY +E + + GLKR+A I+ND GL +N LVA S++ Sbjct: 153 ASYNDETAAIVQQIHTTGLKRIAVIYNDDAYGKAGLDGVQRALKLPANKGVSLVAQASVV 212 Query: 192 --GQNVAKIADKLLESRPDVVLIMSISQNVNSALIRSLRAKGYLGYFYCASLVCSPLLTS 249 +V +LE +PDVV+++S Q V +AL++ + +GY G FY S V + L + Sbjct: 213 RNTTDVKSAITTVLEQKPDVVVVISAYQTV-AALVKGAQEQGYAGQFYNVSFVGTKALAN 271 Query: 250 DLEEAASGLIISQIVPHPWKARTPIVHEYQKAMR 283 L +A G+IISQ++P+P+ +P+V +YQK ++ Sbjct: 272 ALGKAGGGVIISQVMPYPYSGASPVVRDYQKLLK 305 >ref|YP_004754303.1| putative LEU/ILE/VAL-binding signal peptide protein [Collimonas fungivorans Ter331] gb|AEK63480.1| putative LEU/ILE/VAL-binding signal peptide protein [Collimonas fungivorans Ter331] Length = 424 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/273 (36%), Positives = 157/273 (57%), Gaps = 5/273 (1%) Query: 17 NNDIVVGQSADLSGPYAKLTRQFITGANVYFAQLNSRGGITGRRVRLMTLDDQNDPTLAL 76 + I++GQSA SGP A+L Q GA YF +N +GG+ GR++ ++ DD+ + LA Sbjct: 73 DQKIILGQSAAFSGPAAQLGIQMNAGAKAYFDSVNEQGGVFGRQIEIIKADDKYEADLAA 132 Query: 77 KNTQDLLDEHKAIALFGYIGAQTTVAVLPLINERKVPYFAPVTGSWIVYAAFNRHVFTIR 136 NT+ L+++ ALFGY+G T+ A LP+ + VP+FAPVTG+ + NR VF IR Sbjct: 133 ANTKRLIEKDDVFALFGYVGTPTSNAALPIFTQAGVPFFAPVTGAQSLREPLNRQVFNIR 192 Query: 137 ASYANEYDYLFSRFTQMGLKRLAIF--NDATGLPHNAMMKAKISNANAQLVASESIM--G 192 ASY +E ++L + +G+K +A+F NDA G ++ + N +LV + ++ Sbjct: 193 ASYFDETEHLVEKLANVGIKNIAVFYQNDAYGRAGLEGVQRALKKMNLELVEAATVERNS 252 Query: 193 QNVAKIADKLLESRPDVVLIMSISQNVNSALIRSLRAKGYLGYFYCASLVCSPLLTSDLE 252 +V K+L RP ++ +S + +A I+ +R GY G FY S V S L L Sbjct: 253 TDVKGAVSKILPKRPAAIIQISAYASC-AAYIKEMRKAGYNGQFYNVSFVGSQALADALG 311 Query: 253 EAASGLIISQIVPHPWKARTPIVHEYQKAMRPA 285 + G++ISQ+VP PW + TP++ EY K M+ A Sbjct: 312 KDGEGVVISQVVPFPWSSSTPVLAEYTKLMQKA 344