BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0560.p (564 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777562.1| bifunctional 3-dehydroquinate synthase/shiki... 925 0.0 ref|YP_001355053.1| bifunctional shikimate kinase/3-dehydroquina... 877 0.0 ref|YP_001101350.1| bifunctional 3-dehydroquinate synthase/shiki... 863 0.0 ref|YP_004751118.1| bifunctional 3-dehydroquinate synthase/shiki... 848 0.0 ref|ZP_08274235.1| bifunctional 3-dehydroquinate synthase/shikim... 785 0.0 >ref|YP_003777562.1| bifunctional 3-dehydroquinate synthase/shikimate kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65654.1| bifunctional enzyme: 3-dehydroquinate synthase/shikimate kinase [Herbaspirillum seropedicae SmR1] Length = 596 Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/593 (78%), Positives = 504/593 (84%), Gaps = 34/593 (5%) Query: 1 MSGSIFLVGLMGAGKTTIGRALAKKLNKRFVDSDHEIESRTGTTIPVIFEIEGEESFRKR 60 M+GSIFLVGLMGAGKTTIGRALAKKLNKRF+DSDHEIE+RTG TIPVIFEIEGEE+FR+R Sbjct: 1 MTGSIFLVGLMGAGKTTIGRALAKKLNKRFIDSDHEIEARTGATIPVIFEIEGEENFRRR 60 Query: 61 EADVIRELSAQQDIVLATGGGAILRAETRAYLKQRGTVIYLRAGINQILQRTGRDKNRPL 120 EA+VIREL+A DIVLATGGGAILRAE R LK+ GTV+YLRA INQILQRTGRDKNRPL Sbjct: 61 EAEVIRELTALPDIVLATGGGAILRAENRDNLKKGGTVVYLRASINQILQRTGRDKNRPL 120 Query: 121 LQTADPRRKLEELSRQRDPYYREVADFVIETGRPNVQFLVQAILSQLELTPK----QTAD 176 LQTADPRRKLEELSRQRDP YR+VADFVIET RPNVQFLVQ I+S LEL+P Q+A Sbjct: 121 LQTADPRRKLEELSRQRDPLYRDVADFVIETNRPNVQFLVQTIISHLELSPPESSWQSAP 180 Query: 177 AA---------SAPATSSA---------------QPAAYAEPAM------TASTFAPVAL 206 AA SA TS+A AA AEP + TAS AP+ L Sbjct: 181 AADETIVIERSSALVTSAADGAVVVSTSHTSQTFHGAASAEPTLARMNQNTASAPAPITL 240 Query: 207 QVELGERSYPITIGHDLLSNPELLTRHVAGKRVAVVTNDKVGPLYLPRVRKLLEDAGKQV 266 V+LGERSYPI IG LL + LL ++V GKRVA+VTNDKVGPLYL +V + L AGK V Sbjct: 241 NVDLGERSYPIHIGRGLLDDAGLLPQYVKGKRVAIVTNDKVGPLYLDKVAQPLRAAGKLV 300 Query: 267 TEIVLPDGEEQKTWVSLMKVFDVLLAEKCDRKTTLVALGGGVIGDLTGFAAASYMRGVPF 326 TEIVLPDGEE+K W SLMK+FD LLA+KCDRKTTL+ALGGGVIGDLTGFAAASYMRGVPF Sbjct: 301 TEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRGVPF 360 Query: 327 VQIPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPRELAAGLAE 386 VQ+PTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPREL+AG+AE Sbjct: 361 VQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPRELSAGIAE 420 Query: 387 VIKHGAIIDAAFFDWIEANIGKLVAKDNAALAYSIQRSCEIKADVVRQDEREGGLRAILN 446 VIKHGAIIDA FFDWIE NI +LV+KD+AALAY+IQRSCEIKA+VVRQDEREGGLRAILN Sbjct: 421 VIKHGAIIDAPFFDWIETNIAQLVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRAILN 480 Query: 447 FGHTFGHAIENGLGYGQWLHGEAVGCGMAMAADLSHRLGYIDAASKDRLTALVKAAGLPV 506 FGHTFGHAIENGLGYGQWLHGEAVGCGM MAADLSHRLGYIDA ++DR+ AL AAGLP Sbjct: 481 FGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLSHRLGYIDAGARDRVRALTAAAGLPT 540 Query: 507 TAPDLGTQRWLELMEVDKKNEGGAIKFILIKPLGQPLITNVPQELLLQTLAAC 559 APDLG RWLELMEVDKKNEGG IKFILI+PLG PLITNVPQ+LLLQTLAAC Sbjct: 541 VAPDLGVARWLELMEVDKKNEGGQIKFILIRPLGSPLITNVPQDLLLQTLAAC 593 >ref|YP_001355053.1| bifunctional shikimate kinase/3-dehydroquinate synthase [Janthinobacterium sp. Marseille] gb|ABR88706.1| bifunctional shikimate kinase/3-dehydroquinate synthase [Janthinobacterium sp. Marseille] Length = 577 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/560 (76%), Positives = 480/560 (85%), Gaps = 4/560 (0%) Query: 1 MSGSIFLVGLMGAGKTTIGRALAKKLNKRFVDSDHEIESRTGTTIPVIFEIEGEESFRKR 60 + G+IFLVGLMGAGKTT+GRALAKKLNKRF+DSDHEIE RTG TIP+IFEIEGE SFR+R Sbjct: 21 VGGNIFLVGLMGAGKTTVGRALAKKLNKRFIDSDHEIEERTGATIPLIFEIEGEASFRQR 80 Query: 61 EADVIRELSAQQDIVLATGGGAILRAETRAYLKQRGTVIYLRAGINQILQRTGRDKNRPL 120 EA+VIR+L+AQQDIVLATGGGA+L AE+RAYLK RGTVIYLRA +N I+QRT DKNRPL Sbjct: 81 EAEVIRDLTAQQDIVLATGGGAVLNAESRAYLKSRGTVIYLRASVNSIVQRTSHDKNRPL 140 Query: 121 LQTADPRRKLEELSRQRDPYYREVADFVIETGRPNVQFLVQAILSQLELTPKQTADAASA 180 LQT DPR+ +EELSR R+P Y EVA VI+TGRPNVQFL+Q+ILSQL P+ T AA Sbjct: 141 LQTGDPRKTIEELSRIREPLYNEVAHIVIDTGRPNVQFLMQSILSQL--GPEHTQAAAQT 198 Query: 181 PATSSAQPAAYAEPAMTASTFAPVALQVELGERSYPITIGHDLLSNPELLTRHVAGKRVA 240 + + + +ST LQV+LG RSYPITIG +LL + LL HVAG RVA Sbjct: 199 AIQDHHSLSKHDMTSQLSST--SNTLQVDLGARSYPITIGQNLLGDSALLAAHVAGSRVA 256 Query: 241 VVTNDKVGPLYLPRVRKLLEDAGKQVTEIVLPDGEEQKTWVSLMKVFDVLLAEKCDRKTT 300 +VTN V PLYL +V K L+ AGKQVTEIVLPDGEE+K W +LMK+FDVLLAEKCDRKTT Sbjct: 257 IVTNTVVAPLYLEQVSKSLQAAGKQVTEIVLPDGEEEKNWANLMKIFDVLLAEKCDRKTT 316 Query: 301 LVALGGGVIGDLTGFAAASYMRGVPFVQIPTTLLSQVDSSVGGKTGINHPLGKNMIGAFY 360 L+ALGGGVIGD+TGFAAA+YMRGVPF+Q+PTTLLSQVDSSVGGKTGINHPLGKNMIGAFY Sbjct: 317 LIALGGGVIGDMTGFAAAAYMRGVPFIQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFY 376 Query: 361 QPQAVIADTATLHTLPPRELAAGLAEVIKHGAIIDAAFFDWIEANIGKLVAKDNAALAYS 420 QPQAVIADTATL+TL REL++GL+EVIKHGAIIDA FFDWIEANIGKLVAKD ALAY+ Sbjct: 377 QPQAVIADTATLNTLIARELSSGLSEVIKHGAIIDAPFFDWIEANIGKLVAKDPEALAYA 436 Query: 421 IQRSCEIKADVVRQDEREGGLRAILNFGHTFGHAIENGLGYGQWLHGEAVGCGMAMAADL 480 I+RSCEIKADVVRQDEREGGLRAILNFGHTFGHAIE G+GYG WLHGEAVGCGM MAADL Sbjct: 437 IKRSCEIKADVVRQDEREGGLRAILNFGHTFGHAIEAGMGYGVWLHGEAVGCGMVMAADL 496 Query: 481 SHRLGYIDAASKDRLTALVKAAGLPVTAPDLGTQRWLELMEVDKKNEGGAIKFILIKPLG 540 SHRLG+IDA +KDR+ A+VKAAGLP AP+LGT+RWLELMEVDKKNEGG IKFIL+KPLG Sbjct: 497 SHRLGFIDAQTKDRIAAVVKAAGLPTIAPNLGTERWLELMEVDKKNEGGQIKFILLKPLG 556 Query: 541 QPLITNVPQELLLQTLAACV 560 +I VPQE LLQTL ACV Sbjct: 557 TSVIMPVPQEALLQTLNACV 576 >ref|YP_001101350.1| bifunctional 3-dehydroquinate synthase/shikimate kinase [Herminiimonas arsenicoxydans] emb|CAL63229.1| bifunctional protein [Includes: 3-dehydroquinate synthase ; shikimate kinase] [Herminiimonas arsenicoxydans] Length = 554 Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/560 (74%), Positives = 479/560 (85%), Gaps = 7/560 (1%) Query: 1 MSGSIFLVGLMGAGKTTIGRALAKKLNKRFVDSDHEIESRTGTTIPVIFEIEGEESFRKR 60 M G+IFLVGLMGAGKTT+GRALAK+LNK+F+DSDHEIE+RTG IP+IFEIEGE SFR+R Sbjct: 1 MGGNIFLVGLMGAGKTTVGRALAKRLNKQFIDSDHEIEARTGAAIPLIFEIEGEASFRQR 60 Query: 61 EADVIRELSAQQDIVLATGGGAILRAETRAYLKQRGTVIYLRAGINQILQRTGRDKNRPL 120 EA+VIR+L+AQQDIVLATGGGA+L AE RAYLK RGTVIYLRA +N +LQRT DKNRPL Sbjct: 61 EAEVIRDLTAQQDIVLATGGGAVLNAENRAYLKSRGTVIYLRASVNNLLQRTSHDKNRPL 120 Query: 121 LQTADPRRKLEELSRQRDPYYREVADFVIETGRPNVQFLVQAILSQLELTPKQTADAASA 180 LQT DPR+ LEELSR R+P Y E+AD VI+TGRPNVQFL+Q+IL+QL P+ T +A+A Sbjct: 121 LQTGDPRKTLEELSRIREPLYNEIADIVIDTGRPNVQFLMQSILAQL--GPEHT-QSATA 177 Query: 181 PATSSAQPAAYAEPAMTASTFAPVALQVELGERSYPITIGHDLLSNPELLTRHVAGKRVA 240 + + + P ++AS L V+LG RSYPI+IG LL + ++ H+ G RVA Sbjct: 178 VSLQQDLLSKHPMPQLSASH----TLYVDLGARSYPISIGQALLDDQTVVAAHIPGARVA 233 Query: 241 VVTNDKVGPLYLPRVRKLLEDAGKQVTEIVLPDGEEQKTWVSLMKVFDVLLAEKCDRKTT 300 +VTN V PLYL R+ LE AGK VT+IVLPDGEE+K W +LMKVFDVLLAEKCDRKTT Sbjct: 234 IVTNTVVAPLYLDRLTATLEAAGKHVTQIVLPDGEEEKNWANLMKVFDVLLAEKCDRKTT 293 Query: 301 LVALGGGVIGDLTGFAAASYMRGVPFVQIPTTLLSQVDSSVGGKTGINHPLGKNMIGAFY 360 L+ALGGGVIGD+TGFAAA+YMRGVPF+Q+PTTLLSQVDSSVGGKTGINHPLGKNMIGAFY Sbjct: 294 LIALGGGVIGDMTGFAAAAYMRGVPFIQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFY 353 Query: 361 QPQAVIADTATLHTLPPRELAAGLAEVIKHGAIIDAAFFDWIEANIGKLVAKDNAALAYS 420 QPQAVIADT+TL+TLP REL+AGL+EVIKHGAIIDA FFDWIEANI KLVAKD ALAY+ Sbjct: 354 QPQAVIADTSTLNTLPARELSAGLSEVIKHGAIIDAPFFDWIEANIAKLVAKDADALAYA 413 Query: 421 IQRSCEIKADVVRQDEREGGLRAILNFGHTFGHAIENGLGYGQWLHGEAVGCGMAMAADL 480 I+RSCEIKADVVRQDEREGGLRAILNFGHTFGHAIE G+GYG WLHGEAVGCGM MAADL Sbjct: 414 IKRSCEIKADVVRQDEREGGLRAILNFGHTFGHAIEAGMGYGVWLHGEAVGCGMVMAADL 473 Query: 481 SHRLGYIDAASKDRLTALVKAAGLPVTAPDLGTQRWLELMEVDKKNEGGAIKFILIKPLG 540 S RLG+IDA SK+R+ A+VKAAGLP APDLG RWLELMEVDKKNEGGAIKFIL+KPLG Sbjct: 474 SQRLGFIDARSKERIVAVVKAAGLPTVAPDLGVARWLELMEVDKKNEGGAIKFILLKPLG 533 Query: 541 QPLITNVPQELLLQTLAACV 560 +I +VPQ+LLLQTL ACV Sbjct: 534 TSIIMSVPQDLLLQTLNACV 553 >ref|YP_004751118.1| bifunctional 3-dehydroquinate synthase/shikimate kinase [Collimonas fungivorans Ter331] gb|AEK60295.1| bifunctional 3-dehydroquinate synthase/shikimate kinase [Collimonas fungivorans Ter331] Length = 607 Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/564 (73%), Positives = 476/564 (84%), Gaps = 9/564 (1%) Query: 2 SGSIFLVGLMGAGKTTIGRALAKKLNKRFVDSDHEIESRTGTTIPVIFEIEGEESFRKRE 61 +G+IFLVGLMGAGKTT+GRALAKKLNK F+DSDHEIE+RTG +IP+IFEIEGEESFR+RE Sbjct: 34 TGNIFLVGLMGAGKTTVGRALAKKLNKLFIDSDHEIEARTGVSIPLIFEIEGEESFRQRE 93 Query: 62 ADVIRELSAQQDIVLATGGGAILRAETRAYLKQRGTVIYLRAGINQILQRTGRDKNRPLL 121 +VIR+LS ++ IVLATGGGA++R E R YLK RGTVIYLRA I+ ILQRT RDKNRPLL Sbjct: 94 TEVIRDLSGRRGIVLATGGGAVMRPENREYLKTRGTVIYLRASIHNILQRTSRDKNRPLL 153 Query: 122 QTADPRRKLEELSRQRDPYYREVADFVIETGRPNVQFLVQAILSQLELTPKQTADAA--- 178 QTADPRR+LEELSRQR+PYYR+VAD VI+TGRPNVQFLV +ILSQLEL P + + Sbjct: 154 QTADPRRRLEELSRQREPYYRDVADIVIDTGRPNVQFLVHSILSQLELLPDEPGQGSGLV 213 Query: 179 -SAPATSSAQPAAYAEPAMTASTFAP-----VALQVELGERSYPITIGHDLLSNPELLTR 232 A A P + + +T + P + LQVELGERSYPI IG LL++ E + R Sbjct: 214 SQAGAIVPTSPNSSMDQQLTQQSTPPAPAPTITLQVELGERSYPIEIGPSLLNDRERIAR 273 Query: 233 HVAGKRVAVVTNDKVGPLYLPRVRKLLEDAGKQVTEIVLPDGEEQKTWVSLMKVFDVLLA 292 + GK+VAVVTN V PLYL + L+DAGK V EIVLPDGEE+K W SLM++FD LL+ Sbjct: 274 LITGKQVAVVTNTTVAPLYLQGFSQALKDAGKSVLEIVLPDGEEEKNWASLMQIFDRLLS 333 Query: 293 EKCDRKTTLVALGGGVIGDLTGFAAASYMRGVPFVQIPTTLLSQVDSSVGGKTGINHPLG 352 KCDRKTTL+ALGGGVIGDLTGFAA++YMRGVPFVQIPTTLL+QVDSSVGGKTGINHPLG Sbjct: 334 AKCDRKTTLIALGGGVIGDLTGFAASAYMRGVPFVQIPTTLLAQVDSSVGGKTGINHPLG 393 Query: 353 KNMIGAFYQPQAVIADTATLHTLPPRELAAGLAEVIKHGAIIDAAFFDWIEANIGKLVAK 412 KNMIGAFYQPQAVIADT TLH+LP REL+AGLAEVIK+GA+IDA FF WIEANIGKL+A+ Sbjct: 394 KNMIGAFYQPQAVIADTMTLHSLPERELSAGLAEVIKYGAVIDAEFFKWIEANIGKLMAR 453 Query: 413 DNAALAYSIQRSCEIKADVVRQDEREGGLRAILNFGHTFGHAIENGLGYGQWLHGEAVGC 472 DNAALAY+I+RSCE+KADVVRQDEREGGLRAILNFGHTFGHAIE+GLGYG+WLHGEAVGC Sbjct: 454 DNAALAYAIRRSCELKADVVRQDEREGGLRAILNFGHTFGHAIESGLGYGKWLHGEAVGC 513 Query: 473 GMAMAADLSHRLGYIDAASKDRLTALVKAAGLPVTAPDLGTQRWLELMEVDKKNEGGAIK 532 GM MAADLSHRLG+I A K+R++ALV+AAGLP AP+LG RWLELM++DKKNE G IK Sbjct: 514 GMVMAADLSHRLGHISAVDKERVSALVRAAGLPTEAPNLGAGRWLELMQIDKKNEDGQIK 573 Query: 533 FILIKPLGQPLITNVPQELLLQTL 556 FIL+KPLG LIT PQ+ LL TL Sbjct: 574 FILMKPLGGHLITGAPQDALLATL 597 >ref|ZP_08274235.1| bifunctional 3-dehydroquinate synthase/shikimate kinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32303.1| bifunctional 3-dehydroquinate synthase/shikimate kinase [Oxalobacteraceae bacterium IMCC9480] Length = 568 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/565 (70%), Positives = 459/565 (81%), Gaps = 4/565 (0%) Query: 1 MSGSIFLVGLMGAGKTTIGRALAKKLNKRFVDSDHEIESRTGTTIPVIFEIEGEESFRKR 60 M+G+IFL+GLMG+GKTT+GRALA+KLNKRF+DSDHEIE+RTG +IPVIFE+EGE SFR+R Sbjct: 1 MNGNIFLIGLMGSGKTTVGRALARKLNKRFIDSDHEIEARTGASIPVIFEVEGEASFRQR 60 Query: 61 EADVIRELSAQQDIVLATGGGAILRAETRAYLKQRGTVIYLRAGINQILQRTGRDKNRPL 120 EA+VI++L+A DIVLATGGGAIL +RA L +RGTVIYLRA ++ IL RTG DKNRPL Sbjct: 61 EAEVIKDLTALDDIVLATGGGAILNPASRALLAERGTVIYLRASVSSILHRTGHDKNRPL 120 Query: 121 LQTADPRRKLEELSRQRDPYYREVADFVIETGRPNVQFLVQAILSQLELTPKQT----AD 176 LQ DPRR+LE+LSRQR+P Y E+AD VI+TGRPNVQFLV IL L L P + + Sbjct: 121 LQGPDPRRRLEDLSRQREPMYAEIADIVIDTGRPNVQFLVNNILMHLGLAPARCIEPPMN 180 Query: 177 AASAPATSSAQPAAYAEPAMTASTFAPVALQVELGERSYPITIGHDLLSNPELLTRHVAG 236 + P A P + A+ PV LQV+LG RSYPITIG LL + ELL +HV G Sbjct: 181 SQVMPIVIPAAPPIPVTRELAAARPVPVRLQVDLGTRSYPITIGPGLLDDVELLRQHVHG 240 Query: 237 KRVAVVTNDKVGPLYLPRVRKLLEDAGKQVTEIVLPDGEEQKTWVSLMKVFDVLLAEKCD 296 +RVAVVTN V PLYL R+ L AGKQVT +VLPDGEE+KTW +LMK+FD LLA+KCD Sbjct: 241 ERVAVVTNTVVAPLYLERLTHSLVAAGKQVTTVVLPDGEEEKTWPNLMKIFDGLLADKCD 300 Query: 297 RKTTLVALGGGVIGDLTGFAAASYMRGVPFVQIPTTLLSQVDSSVGGKTGINHPLGKNMI 356 RKTTL+ALGGGV+GD+TGFAAASYMRGVP +QIPTTLLSQVDSSVGGKTGINHPLGKNMI Sbjct: 301 RKTTLIALGGGVVGDMTGFAAASYMRGVPLIQIPTTLLSQVDSSVGGKTGINHPLGKNMI 360 Query: 357 GAFYQPQAVIADTATLHTLPPRELAAGLAEVIKHGAIIDAAFFDWIEANIGKLVAKDNAA 416 GAFYQPQ VIADTATL +LP REL+AGLAEVIKHGAIID F DWIEAN+G L+AKD AA Sbjct: 361 GAFYQPQTVIADTATLDSLPARELSAGLAEVIKHGAIIDPVFLDWIEANMGALLAKDAAA 420 Query: 417 LAYSIQRSCEIKADVVRQDEREGGLRAILNFGHTFGHAIENGLGYGQWLHGEAVGCGMAM 476 L + I+RSCEIKAD+VRQDERE G+RAILNFGHTF HAIE GLGYG WLHGEAVGCGM M Sbjct: 421 LTHVIRRSCEIKADIVRQDERESGIRAILNFGHTFAHAIEAGLGYGTWLHGEAVGCGMVM 480 Query: 477 AADLSHRLGYIDAASKDRLTALVKAAGLPVTAPDLGTQRWLELMEVDKKNEGGAIKFILI 536 AADLS RLG ID A++DRL +V AAGLPV APDLG WLELM+VDKKNEGGAIKFIL+ Sbjct: 481 AADLSCRLGLIDTAARDRLARIVSAAGLPVIAPDLGLATWLELMQVDKKNEGGAIKFILL 540 Query: 537 KPLGQPLITNVPQELLLQTLAACVQ 561 +P G +I VP +L TL ACVQ Sbjct: 541 QPTGSAIIRTVPDTVLAHTLHACVQ 565