BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0557.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001355056.1| PilO type IV pilus assembly protein [Janthin... 114 1e-23 ref|YP_004695936.1| Pilus assembly protein PilO [Nitrosomonas sp... 113 2e-23 ref|YP_001101353.1| putative membrane protein ComO [Herminiimona... 112 3e-23 ref|YP_002006883.1| fimbrial type-4 assembly transmembrane prote... 111 5e-23 ref|YP_002943059.1| pilus assembly protein PilO [Variovorax para... 110 2e-22 >ref|YP_001355056.1| PilO type IV pilus assembly protein [Janthinobacterium sp. Marseille] gb|ABR88686.1| PilO type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 218 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 1/190 (0%) Query: 9 QWRELNGSHPSSWPRAWRNALLLMLFVAIVLTGWQLYLMPEIAALERSEHDYAAVKSTYP 68 Q+R+LNG HP WP R + VA++ GW LY ++ L+R+ + +K Y Sbjct: 14 QFRDLNGLHPGQWPVVPRMLCAAGVLVAVLGVGWYLYWSDQLDELDRAVAEEVTLKDAYK 73 Query: 69 EKHRRAMAFAHSARRIQDLEQRVKTLEQQLKTFIDVDLVLDGIGDAALQNRLQFEFARPG 128 K ++A+ ++ + + + V TLE+QL + ++D +L I A L L FE +PG Sbjct: 74 SKVQQAINLVGLRKQKEQVNEYVSTLEKQLPSKAEMDALLSDINQAGLGRGLAFELFKPG 133 Query: 129 HTETKHGYVEAPIAIRLSGDYHDVVRFTADIAAMTHLVILGDMRVSSADRPGQVRLEAIA 188 + Y E PI I+++G YHDV FT+DIA + +V L +M + + + L+A+A Sbjct: 134 QVVVRDYYAELPIVIKVTGSYHDVGAFTSDIANLPRIVTLNNMNL-VVTKGNTLTLDAVA 192 Query: 189 LAYRMAPRKE 198 +R +E Sbjct: 193 KTFRYLDEEE 202 >ref|YP_004695936.1| Pilus assembly protein PilO [Nitrosomonas sp. Is79A3] gb|AEJ02537.1| Pilus assembly protein PilO [Nitrosomonas sp. Is79A3] Length = 204 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 110/194 (56%), Gaps = 2/194 (1%) Query: 6 LIVQWRELNGSHPSSWPRAWRNALLLMLFVAIVLTGWQLYLMPEIAALERSEHDYAAVKS 65 L+++ R+L+ + +WP A++ A L +LF+AI++ G L +I LE + +K+ Sbjct: 4 LLLELRQLDINQAGNWPVAFKIAALAILFIAIIVAGHFLVWQEQIETLENIQAQEETLKN 63 Query: 66 TYPEKHRRAMAFAHSARRIQDLEQRVKTLEQQLKTFIDVDLVLDGIGDAALQNRLQFEFA 125 TY K R A+ +++D+EQ + L +QL +++ +L I A L LQFE Sbjct: 64 TYLAKKRSAVNLPALRLQLKDIEQSLSALLKQLPNKSEMEALLVDINQAGLGRGLQFELF 123 Query: 126 RPGHTETKHG-YVEAPIAIRLSGDYHDVVRFTADIAAMTHLVILGDMRVSSADRPGQVRL 184 +P ET H Y E P++IR++G YHD+ F +D+A ++ +V L D+ V+ G++ L Sbjct: 124 KPAAKETMHAFYAELPVSIRVTGGYHDIGAFASDVAQLSRIVTLNDISVTPG-TDGKLVL 182 Query: 185 EAIALAYRMAPRKE 198 +A+A +R +E Sbjct: 183 DAVAKTFRYLDEEE 196 >ref|YP_001101353.1| putative membrane protein ComO [Herminiimonas arsenicoxydans] emb|CAL63232.1| Pilus assembly protein, PilO precursor [Herminiimonas arsenicoxydans] Length = 219 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 1/190 (0%) Query: 9 QWRELNGSHPSSWPRAWRNALLLMLFVAIVLTGWQLYLMPEIAALERSEHDYAAVKSTYP 68 Q+R+LNG HP WP R L + +A++ GW Y ++ L+R+ + +K Y Sbjct: 14 QFRDLNGLHPGQWPIFPRMLCALGVLIAVLGIGWFFYWSEQLEELDRAAAEELTLKDAYK 73 Query: 69 EKHRRAMAFAHSARRIQDLEQRVKTLEQQLKTFIDVDLVLDGIGDAALQNRLQFEFARPG 128 K ++A+ ++ + + + V TLE+QL + ++D +L I A L LQFE +PG Sbjct: 74 IKVQQAVNLDGLRKQKEQVNEYVATLEKQLPSKAEMDALLSDINQAGLGRGLQFELFKPG 133 Query: 129 HTETKHGYVEAPIAIRLSGDYHDVVRFTADIAAMTHLVILGDMRVSSADRPGQVRLEAIA 188 + Y E PI I++SG YHDV FT+DIA + +V L M + A + + L+A+A Sbjct: 134 QVIVRDYYAELPIDIKVSGHYHDVGAFTSDIANLPRIVTLNKMNLVVA-KDNTLTLDAVA 192 Query: 189 LAYRMAPRKE 198 +R +E Sbjct: 193 KTFRYLDDEE 202 >ref|YP_002006883.1| fimbrial type-4 assembly transmembrane protein [Cupriavidus taiwanensis LMG 19424] emb|CAQ70822.1| FIMBRIAL TYPE-4 ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 223 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 105/192 (54%), Gaps = 1/192 (0%) Query: 1 MNATALIVQWRELNGSHPSSWPRAWRNALLLMLFVAIVLTGWQLYLMPEIAALERSEHDY 60 +N L Q+R LN + P +WP A R ++ ++L GWQ Y + LER + Sbjct: 7 INLADLTSQFRGLNLNEPETWPAAPRVLFAILAAAVVLLLGWQFYWSAKFDELERQRQEQ 66 Query: 61 AAVKSTYPEKHRRAMAFAHSARRIQDLEQRVKTLEQQLKTFIDVDLVLDGIGDAALQNRL 120 ++K Y K + + + +EQRV LE+QL ++D +L + A + L Sbjct: 67 ESLKQAYQTKVAQVANLDALREQKKQVEQRVALLERQLPNKTEMDALLADVNHAGVARGL 126 Query: 121 QFEFARPGHTETKHGYVEAPIAIRLSGDYHDVVRFTADIAAMTHLVILGDMRVSSADRPG 180 QFE +P K + E P+ +R++G YH+V +F AD+AA++ +V + ++++++ + G Sbjct: 127 QFELFKPQAAVIKPYFAEIPVNLRVTGRYHEVAQFNADVAALSRIVSMQNLQLANT-KEG 185 Query: 181 QVRLEAIALAYR 192 + +EA+A+AYR Sbjct: 186 GLSMEAVAMAYR 197 >ref|YP_002943059.1| pilus assembly protein PilO [Variovorax paradoxus S110] gb|ACS17793.1| Pilus assembly protein PilO [Variovorax paradoxus S110] Length = 227 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 4/187 (2%) Query: 9 QWRELNGSHPSSWPRAWRNALLLMLFVAIVLTG-WQLYLMPEIAALERSEHDYAAVKSTY 67 Q+R LN + PS+WP R AL L + A+VL G W ++L LE +++ Y Sbjct: 22 QFRNLNPNDPSAWPAVPRYALCLAV-TALVLAGLWFVWLTNSNDELESERAKEVTLRADY 80 Query: 68 PEKHRRAMAFAHSARRIQDLEQRVKTLEQQLKTFIDVDLVLDGIGDAALQNRLQFEFARP 127 +K A ++ + ++Q V LE+QL + ++D +L I A L LQFE RP Sbjct: 81 QKKVALAANLDLLKKQREQVQQYVTLLEKQLPSKAEMDALLSDINQAGLGRSLQFELFRP 140 Query: 128 GHTETKHGYVEAPIAIRLSGDYHDVVRFTADIAAMTHLVILGDMRVS--SADRPGQVRLE 185 G K Y E PIA+R++G YHD+ F AD+A+++ +V L ++ ++ D+ G + ++ Sbjct: 141 GQVSVKDYYAELPIAVRVTGRYHDIGSFAADVASLSRIVTLNNLTITPQQKDKDGTLTMD 200 Query: 186 AIALAYR 192 A A YR Sbjct: 201 ATARTYR 207